Wall clock time and date at job start Mon Mar 30 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86805 * 119.99966 * 2 1 4 4 H 1.48495 * 109.47128 * 270.00132 * 3 2 1 5 5 H 1.48504 * 109.46742 * 29.99979 * 3 2 1 6 6 H 1.48500 * 109.47091 * 149.99639 * 3 2 1 7 7 C 1.39909 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99823 * 197.92208 * 7 2 1 9 9 C 1.41306 * 119.99982 * 17.92714 * 7 2 1 10 10 C 1.40719 * 120.19077 * 24.45651 * 9 7 2 11 11 C 1.37929 * 119.72577 * 180.02562 * 10 9 7 12 12 O 1.35946 * 119.93984 * 179.97438 * 11 10 9 13 13 C 1.39460 * 120.11760 * 359.97438 * 11 10 9 14 14 F 1.35097 * 119.80594 * 180.02562 * 13 11 10 15 15 C 1.38784 * 120.39144 * 0.02562 * 13 11 10 16 16 C 1.50700 * 119.86693 * 179.97438 * 15 13 11 17 17 F 1.39903 * 109.46989 * 179.97438 * 16 15 13 18 18 F 1.39892 * 109.47160 * 299.98054 * 16 15 13 19 19 F 1.39901 * 109.46580 * 59.98216 * 16 15 13 20 20 C 1.37594 * 120.27007 * 359.97438 * 15 13 11 21 21 H 0.97001 * 120.00564 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.13656 * 0.04625 * 10 9 7 23 23 H 0.96706 * 113.99623 * 270.02006 * 12 11 10 24 24 H 1.07998 * 120.06370 * 179.72380 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4399 2.6527 0.7001 6 1 3.5400 1.4402 0.7001 7 6 2.0081 -1.2116 -0.0005 8 1 3.0488 -1.2344 0.2873 9 6 1.3531 -2.4055 -0.3778 10 6 0.2237 -2.3586 -1.2159 11 6 -0.4086 -3.5298 -1.5777 12 8 -1.5004 -3.4896 -2.3867 13 6 0.0700 -4.7553 -1.1149 14 9 -0.5538 -5.8986 -1.4737 15 6 1.1835 -4.8072 -0.2881 16 6 1.6903 -6.1378 0.2055 17 9 2.8131 -5.9377 1.0158 18 9 0.6878 -6.7730 0.9461 19 9 2.0407 -6.9378 -0.8874 20 6 1.8266 -3.6487 0.0828 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1463 -1.4095 -1.5746 23 1 -2.3394 -3.4142 -1.9117 24 1 2.6901 -3.6927 0.7299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575702438.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:27 Heat of formation + Delta-G solvation = -232.046767 kcal Electronic energy + Delta-G solvation = -18326.496231 eV Core-core repulsion = 14511.022022 eV Total energy + Delta-G solvation = -3815.474209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.59261 -47.81957 -47.03929 -47.02700 -38.35611 -36.10316 -33.97182 -30.49228 -29.13054 -25.60398 -25.07212 -21.48896 -21.20875 -18.65352 -17.91531 -17.87721 -16.84116 -16.57421 -16.20933 -15.51059 -15.00614 -14.59029 -13.93962 -13.89538 -13.74941 -13.49177 -13.37303 -13.22353 -13.16284 -12.72331 -12.22715 -11.95742 -11.58460 -11.48904 -11.21218 -10.89772 -10.49299 -10.26052 -9.71264 -9.44809 -8.07386 -7.68306 -7.14055 -4.74665 2.03409 2.20796 2.88221 2.92872 2.94634 3.30185 3.68440 4.03041 4.37812 4.66768 4.89843 5.06236 5.21335 5.41264 6.08503 6.46876 6.51152 6.75914 6.82623 7.08977 7.34694 7.41983 7.59007 8.00640 8.34548 8.41714 8.51457 9.79842 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.007960 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.548092 B = 3516.847233 C = 4270.157597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.090 0.910 9 C 0.108 3.892 10 C -0.145 4.145 11 C 0.092 3.908 12 O -0.498 6.498 13 C -0.026 4.026 14 F -0.154 7.154 15 C -0.167 4.167 16 C 0.511 3.489 17 F -0.181 7.181 18 F -0.183 7.183 19 F -0.183 7.183 20 C -0.166 4.166 21 H 0.288 0.712 22 H 0.141 0.859 23 H 0.380 0.620 24 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 -2.087 0.691 2.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.108 0.892 9 C 0.105 3.895 10 C -0.165 4.165 11 C 0.047 3.953 12 O -0.307 6.307 13 C -0.046 4.046 14 F -0.133 7.133 15 C -0.169 4.169 16 C 0.457 3.543 17 F -0.163 7.163 18 F -0.164 7.164 19 F -0.164 7.164 20 C -0.186 4.186 21 H 0.100 0.900 22 H 0.158 0.842 23 H 0.234 0.766 24 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.838 -2.047 0.261 2.228 hybrid contribution -0.156 0.316 0.451 0.572 sum 0.682 -1.731 0.711 1.992 Atomic orbital electron populations 1.69764 1.07825 1.30319 1.32565 1.26030 0.94883 1.01994 0.91798 0.86126 0.80463 0.79533 0.79714 1.18879 1.19986 1.18223 1.19656 0.98552 0.90610 1.38242 0.89193 1.17413 0.90915 0.91902 0.89270 1.21671 0.99494 0.96474 0.98844 1.18158 0.91060 0.90874 0.95186 1.84774 1.15478 1.96085 1.34348 1.17129 0.98145 0.81711 1.07651 1.91345 1.82177 1.48491 1.91268 1.19439 1.00092 0.91925 1.05445 1.18396 0.74981 0.85941 0.75004 1.93116 1.53718 1.95143 1.74276 1.93162 1.61213 1.84177 1.77894 1.93167 1.92273 1.76331 1.54658 1.20819 1.02881 0.90593 1.04310 0.90044 0.84173 0.76642 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.89 10.96 55.55 0.61 -17.28 14 2 C 0.07 1.63 5.14 -17.34 -0.09 1.54 14 3 Si 0.92 16.67 29.60 -169.99 -5.03 11.64 14 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 14 5 H -0.27 -4.91 7.11 56.52 0.40 -4.50 14 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 7 C -0.44 -10.40 9.04 -37.79 -0.34 -10.74 14 8 H 0.09 2.00 7.91 -52.48 -0.41 1.58 14 9 C 0.11 2.61 5.57 -106.83 -0.60 2.01 14 10 C -0.14 -3.46 8.62 -38.76 -0.33 -3.80 14 11 C 0.09 2.12 6.70 -39.24 -0.26 1.85 14 12 O -0.50 -10.19 13.36 -19.57 -0.26 -10.46 14 13 C -0.03 -0.59 7.16 -38.92 -0.28 -0.87 14 14 F -0.15 -3.51 16.26 2.25 0.04 -3.48 14 15 C -0.17 -3.73 5.37 -104.65 -0.56 -4.29 14 16 C 0.51 10.39 3.02 36.01 0.11 10.50 14 17 F -0.18 -3.45 15.95 2.25 0.04 -3.41 14 18 F -0.18 -3.68 17.04 2.25 0.04 -3.64 14 19 F -0.18 -3.68 17.04 2.25 0.04 -3.65 14 20 C -0.17 -3.77 9.17 -38.86 -0.36 -4.12 14 21 H 0.29 5.96 8.30 -40.82 -0.34 5.63 14 22 H 0.14 3.41 6.16 -52.49 -0.32 3.08 14 23 H 0.38 5.92 9.06 45.56 0.41 6.33 14 24 H 0.12 2.56 7.13 -52.49 -0.37 2.19 14 LS Contribution 239.87 15.07 3.61 3.61 Total: -1.00 -25.43 239.87 -3.46 -28.89 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.17 Total: 5.68 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.71 Total: -7.92 kcal Atomic # 7 Polarization: -17.89 SS G_CDS: 0.61 Total: -17.28 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.26 Total: -10.46 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 0.15 Total: -14.17 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.43 -3.46 -28.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575702438.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.152 kcal (2) G-P(sol) polarization free energy of solvation -25.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds