Wall clock time and date at job start Mon Mar 30 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48499 * 109.47207 * 268.84974 * 3 2 1 5 5 H 1.48500 * 109.47077 * 28.85245 * 3 2 1 6 6 H 1.48495 * 109.47024 * 148.85258 * 3 2 1 7 7 C 1.39902 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99923 * 348.23598 * 7 2 1 9 9 C 1.41304 * 120.00124 * 168.23049 * 7 2 1 10 10 C 1.40808 * 120.19628 * 327.59982 * 9 7 2 11 11 C 1.37554 * 119.87981 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.27417 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.80523 * 179.97438 * 12 11 10 14 14 C 1.39421 * 120.38554 * 359.97438 * 12 11 10 15 15 O 1.35952 * 119.94190 * 179.97438 * 14 12 11 16 16 C 1.37963 * 120.11835 * 0.23741 * 14 12 11 17 17 C 1.50708 * 120.13562 * 179.74371 * 16 14 12 18 18 F 1.39898 * 109.46824 * 24.27607 * 17 16 14 19 19 F 1.39891 * 109.47052 * 144.27779 * 17 16 14 20 20 F 1.39899 * 109.46909 * 264.27658 * 17 16 14 21 21 H 0.97000 * 119.99957 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.05308 * 359.97244 * 10 9 7 23 23 H 1.08005 * 119.86111 * 180.02562 * 11 10 9 24 24 H 0.96701 * 114.00072 * 89.99772 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.5143 2.0324 -1.3998 5 1 1.4280 2.6596 0.6756 6 1 3.5277 1.4474 0.7242 7 6 2.0082 -1.2116 -0.0005 8 1 1.4852 -2.1372 0.1897 9 6 3.3989 -1.2243 -0.2502 10 6 3.9714 -0.2747 -1.1180 11 6 5.3259 -0.2933 -1.3568 12 6 6.1312 -1.2450 -0.7460 13 9 7.4604 -1.2550 -0.9877 14 6 5.5762 -2.1905 0.1153 15 8 6.3732 -3.1188 0.7082 16 6 4.2190 -2.1892 0.3628 17 6 3.6178 -3.2147 1.2893 18 9 4.5981 -3.6739 2.1755 19 9 2.5709 -2.6331 2.0123 20 9 3.1266 -4.2891 0.5399 21 1 -0.4850 0.8400 0.0004 22 1 3.3479 0.4664 -1.5960 23 1 5.7648 0.4355 -2.0222 24 1 6.7323 -2.8411 1.5621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575704050.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:31 Heat of formation + Delta-G solvation = -224.886693 kcal Electronic energy + Delta-G solvation = -18862.318223 eV Core-core repulsion = 15047.154498 eV Total energy + Delta-G solvation = -3815.163724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.15974 -47.83967 -46.72127 -46.55983 -38.64451 -36.33614 -33.74455 -30.97716 -29.68526 -25.94314 -24.33412 -22.00015 -21.00341 -18.58659 -17.66391 -17.50924 -17.44716 -16.87990 -15.77208 -15.30564 -15.09316 -14.81035 -14.08492 -13.62903 -13.54718 -13.40319 -13.17780 -13.04857 -12.79864 -12.73510 -12.51989 -12.14768 -11.84057 -11.42529 -11.21296 -10.64461 -10.47183 -10.20183 -9.74128 -9.49195 -8.30860 -7.79678 -7.30770 -4.92995 1.79117 2.03013 2.85499 2.98198 3.05250 3.65820 3.73609 3.92092 4.59253 4.75898 4.84864 5.09957 5.42431 5.48727 5.76203 6.01677 6.24695 6.48886 6.71125 6.83494 7.02297 7.25200 7.38808 7.90067 8.01107 8.18774 8.32147 9.68179 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.013107 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.606532 B = 2135.720928 C = 3181.325720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.082 3.918 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.411 4.411 8 H 0.105 0.895 9 C 0.119 3.881 10 C -0.217 4.217 11 C -0.069 4.069 12 C -0.074 4.074 13 F -0.157 7.157 14 C 0.171 3.829 15 O -0.494 6.494 16 C -0.302 4.302 17 C 0.529 3.471 18 F -0.193 7.193 19 F -0.170 7.170 20 F -0.191 7.191 21 H 0.294 0.706 22 H 0.123 0.877 23 H 0.119 0.881 24 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 1.073 1.552 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.437 4.437 8 H 0.123 0.877 9 C 0.114 3.886 10 C -0.236 4.236 11 C -0.089 4.089 12 C -0.095 4.095 13 F -0.136 7.136 14 C 0.125 3.875 15 O -0.304 6.304 16 C -0.306 4.306 17 C 0.475 3.525 18 F -0.175 7.175 19 F -0.151 7.151 20 F -0.173 7.173 21 H 0.105 0.895 22 H 0.141 0.859 23 H 0.137 0.863 24 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.473 0.789 1.096 4.672 hybrid contribution 0.423 0.770 0.447 0.986 sum 4.896 1.560 1.543 5.365 Atomic orbital electron populations 1.69630 1.08147 1.31257 1.30951 1.26269 0.95003 1.02015 0.90855 0.86280 0.80918 0.78953 0.79743 1.18827 1.21107 1.16451 1.19796 0.90520 0.96595 1.36756 0.87683 1.17218 0.93103 0.89337 0.88906 1.21011 0.94060 1.04416 1.04068 1.20676 0.93728 0.96520 0.97934 1.17292 0.77662 1.03578 1.10928 1.91331 1.31349 1.96776 1.94174 1.17770 0.88156 0.87736 0.93838 1.84769 1.66365 1.40699 1.38588 1.19784 0.93007 1.06865 1.10933 1.17920 0.75569 0.80087 0.78942 1.93051 1.63135 1.90265 1.71003 1.93197 1.58865 1.83998 1.79023 1.93140 1.88557 1.58838 1.76718 0.89500 0.85942 0.86279 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.78 13.93 55.54 0.77 -18.01 14 2 C 0.08 1.93 5.47 -17.34 -0.09 1.84 14 3 Si 0.92 18.45 24.44 -169.99 -4.15 14.29 14 4 H -0.26 -4.98 6.49 56.52 0.37 -4.62 14 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 14 6 H -0.24 -4.97 6.87 56.52 0.39 -4.58 14 7 C -0.41 -10.18 7.72 -37.79 -0.29 -10.47 14 8 H 0.11 2.80 6.87 -52.48 -0.36 2.44 14 9 C 0.12 2.79 5.09 -106.83 -0.54 2.25 14 10 C -0.22 -4.69 7.09 -38.86 -0.28 -4.96 14 11 C -0.07 -1.40 9.99 -39.61 -0.40 -1.79 14 12 C -0.07 -1.57 7.33 -38.92 -0.29 -1.85 14 13 F -0.16 -3.22 17.10 2.25 0.04 -3.18 14 14 C 0.17 3.67 6.61 -39.24 -0.26 3.41 14 15 O -0.49 -9.51 11.31 -19.59 -0.22 -9.73 14 16 C -0.30 -6.88 5.51 -103.79 -0.57 -7.46 14 17 C 0.53 11.61 2.91 36.01 0.10 11.71 14 18 F -0.19 -3.83 14.83 2.25 0.03 -3.79 14 19 F -0.17 -3.85 14.51 2.25 0.03 -3.82 14 20 F -0.19 -4.27 17.30 2.25 0.04 -4.24 14 21 H 0.29 6.33 8.30 -40.82 -0.34 5.99 14 22 H 0.12 2.53 4.42 -52.48 -0.23 2.29 14 23 H 0.12 2.02 8.06 -52.48 -0.42 1.60 14 24 H 0.39 5.71 8.70 45.56 0.40 6.10 14 LS Contribution 227.94 15.07 3.43 3.43 Total: -1.00 -25.83 227.94 -2.44 -28.27 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.20 Total: 4.10 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.61 Total: -7.33 kcal Atomic # 7 Polarization: -18.78 SS G_CDS: 0.77 Total: -18.01 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.22 Total: -9.73 kcal Atomic # 9 Polarization: -15.17 SS G_CDS: 0.14 Total: -15.02 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.15 Total: 14.29 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -25.83 -2.44 -28.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575704050.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.616 kcal (2) G-P(sol) polarization free energy of solvation -25.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds