Wall clock time and date at job start Mon Mar 30 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48499 * 109.47207 * 268.84974 * 3 2 1 5 5 H 1.48500 * 109.47077 * 28.85245 * 3 2 1 6 6 H 1.48495 * 109.47024 * 148.85258 * 3 2 1 7 7 C 1.39902 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99923 * 348.23598 * 7 2 1 9 9 C 1.41304 * 120.00124 * 168.23049 * 7 2 1 10 10 C 1.40808 * 120.19628 * 327.59982 * 9 7 2 11 11 C 1.37554 * 119.87981 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.27417 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.80523 * 179.97438 * 12 11 10 14 14 C 1.39421 * 120.38554 * 359.97438 * 12 11 10 15 15 O 1.35952 * 119.94190 * 179.97438 * 14 12 11 16 16 C 1.37963 * 120.11835 * 0.23741 * 14 12 11 17 17 C 1.50708 * 120.13562 * 179.74371 * 16 14 12 18 18 F 1.39898 * 109.46824 * 24.27607 * 17 16 14 19 19 F 1.39891 * 109.47052 * 144.27779 * 17 16 14 20 20 F 1.39899 * 109.46909 * 264.27658 * 17 16 14 21 21 H 0.97000 * 119.99957 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.05308 * 359.97244 * 10 9 7 23 23 H 1.08005 * 119.86111 * 180.02562 * 11 10 9 24 24 H 0.96701 * 114.00072 * 89.99772 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.5143 2.0324 -1.3998 5 1 1.4280 2.6596 0.6756 6 1 3.5277 1.4474 0.7242 7 6 2.0082 -1.2116 -0.0005 8 1 1.4852 -2.1372 0.1897 9 6 3.3989 -1.2243 -0.2502 10 6 3.9714 -0.2747 -1.1180 11 6 5.3259 -0.2933 -1.3568 12 6 6.1312 -1.2450 -0.7460 13 9 7.4604 -1.2550 -0.9877 14 6 5.5762 -2.1905 0.1153 15 8 6.3732 -3.1188 0.7082 16 6 4.2190 -2.1892 0.3628 17 6 3.6178 -3.2147 1.2893 18 9 4.5981 -3.6739 2.1755 19 9 2.5709 -2.6331 2.0123 20 9 3.1266 -4.2891 0.5399 21 1 -0.4850 0.8400 0.0004 22 1 3.3479 0.4664 -1.5960 23 1 5.7648 0.4355 -2.0222 24 1 6.7323 -2.8411 1.5621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575704050.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:31 Heat of formation + Delta-G solvation = -241.420169 kcal Electronic energy + Delta-G solvation = -18863.035168 eV Core-core repulsion = 15047.154498 eV Total energy + Delta-G solvation = -3815.880670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.90867 -49.48787 -48.43500 -48.35278 -40.30962 -37.95779 -35.47570 -32.67914 -31.39435 -27.67164 -26.07386 -23.68791 -22.71334 -20.27456 -19.38062 -19.23560 -19.19494 -18.55497 -17.45667 -16.98410 -16.74515 -16.45833 -15.69936 -15.36888 -15.23627 -15.11189 -14.85692 -14.75724 -14.56767 -14.45237 -14.18608 -13.83610 -13.48519 -13.09971 -12.85751 -12.36741 -12.15592 -11.81150 -11.40073 -11.12389 -9.97858 -9.50660 -9.04239 -6.75268 0.11942 0.33468 1.26518 1.40110 1.49402 1.97903 2.04504 2.25616 2.92564 3.05733 3.14996 3.37873 3.72276 3.78547 4.18385 4.37517 4.55194 4.84443 5.02312 5.16466 5.31934 5.52812 5.78107 6.05784 6.29004 6.49052 6.71935 8.00751 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.013107 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.606532 B = 2135.720928 C = 3181.325720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.049 3.951 3 Si 0.962 3.038 4 H -0.237 1.237 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.442 4.442 8 H 0.069 0.931 9 C 0.111 3.889 10 C -0.224 4.224 11 C -0.059 4.059 12 C -0.071 4.071 13 F -0.151 7.151 14 C 0.170 3.830 15 O -0.497 6.497 16 C -0.320 4.320 17 C 0.528 3.472 18 F -0.180 7.180 19 F -0.178 7.178 20 F -0.197 7.197 21 H 0.304 0.696 22 H 0.135 0.865 23 H 0.159 0.841 24 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 2.415 0.979 7.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.162 1.162 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.469 4.469 8 H 0.087 0.913 9 C 0.107 3.893 10 C -0.242 4.242 11 C -0.077 4.077 12 C -0.092 4.092 13 F -0.130 7.130 14 C 0.124 3.876 15 O -0.310 6.310 16 C -0.323 4.323 17 C 0.474 3.526 18 F -0.161 7.161 19 F -0.159 7.159 20 F -0.179 7.179 21 H 0.115 0.885 22 H 0.152 0.848 23 H 0.176 0.824 24 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 6.361 2.119 0.530 6.725 hybrid contribution -0.013 0.226 0.651 0.689 sum 6.348 2.345 1.181 6.869 Atomic orbital electron populations 1.69652 1.09336 1.32611 1.32502 1.26963 0.95562 1.04441 0.90008 0.85582 0.79478 0.75524 0.81061 1.16163 1.20082 1.17041 1.19667 0.91430 0.96033 1.39723 0.91287 1.17401 0.92684 0.90183 0.89076 1.21164 0.94991 1.04299 1.03784 1.21031 0.92898 0.96468 0.97350 1.17488 0.78053 1.03318 1.10297 1.91356 1.30865 1.96720 1.94056 1.17821 0.87887 0.87907 0.94029 1.84718 1.65936 1.40434 1.39934 1.19970 0.93770 1.07103 1.11482 1.17931 0.75580 0.79983 0.79091 1.93066 1.62423 1.90101 1.70521 1.93180 1.59398 1.84166 1.79172 1.93121 1.88714 1.59086 1.76941 0.88518 0.84772 0.82383 0.73236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.20 13.93 21.82 0.30 -39.90 14 2 C 0.05 2.35 5.47 85.24 0.47 2.81 14 3 Si 0.96 36.31 24.44 68.60 1.68 37.98 14 4 H -0.24 -7.96 6.49 99.48 0.65 -7.31 14 5 H -0.27 -9.84 7.11 99.48 0.71 -9.14 14 6 H -0.25 -9.47 6.87 99.48 0.68 -8.79 14 7 C -0.44 -22.39 7.72 23.43 0.18 -22.21 14 8 H 0.07 3.88 6.87 -2.91 -0.02 3.86 14 9 C 0.11 5.14 5.09 -21.30 -0.11 5.03 14 10 C -0.22 -9.10 7.09 22.74 0.16 -8.94 14 11 C -0.06 -2.13 9.99 22.25 0.22 -1.91 14 12 C -0.07 -2.77 7.33 22.70 0.17 -2.60 14 13 F -0.15 -5.60 17.10 44.97 0.77 -4.83 14 14 C 0.17 6.92 6.61 22.49 0.15 7.06 14 15 O -0.50 -17.93 11.31 -93.01 -1.05 -18.98 14 16 C -0.32 -14.31 5.51 -19.33 -0.11 -14.41 14 17 C 0.53 23.23 2.91 71.24 0.21 23.43 14 18 F -0.18 -6.95 14.83 44.97 0.67 -6.28 14 19 F -0.18 -8.29 14.51 44.97 0.65 -7.64 14 20 F -0.20 -8.94 17.30 44.97 0.78 -8.16 14 21 H 0.30 13.18 8.30 -92.71 -0.77 12.41 14 22 H 0.13 5.11 4.42 -2.91 -0.01 5.10 14 23 H 0.16 4.50 8.06 -2.91 -0.02 4.47 14 24 H 0.41 10.91 8.70 -74.06 -0.64 10.27 14 Total: -1.00 -54.37 227.94 5.70 -48.67 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.57 Total: 10.87 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 1.34 Total: -11.73 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.30 Total: -39.90 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.05 Total: -18.98 kcal Atomic # 9 Polarization: -29.77 SS G_CDS: 2.87 Total: -26.90 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 1.68 Total: 37.98 kcal Total: -54.37 5.70 -48.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575704050.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.753 kcal (2) G-P(sol) polarization free energy of solvation -54.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds