Wall clock time and date at job start Mon Mar 30 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86800 * 120.00400 * 2 1 4 4 H 1.48503 * 109.46687 * 269.99829 * 3 2 1 5 5 H 1.48503 * 109.47021 * 29.99939 * 3 2 1 6 6 H 1.48497 * 109.47148 * 150.00268 * 3 2 1 7 7 C 1.39903 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 197.75034 * 7 2 1 9 9 C 1.41096 * 120.00194 * 17.75121 * 7 2 1 10 10 C 1.40760 * 120.25805 * 24.72876 * 9 7 2 11 11 C 1.36413 * 119.95368 * 179.97438 * 10 9 7 12 12 C 1.39114 * 120.50518 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.73934 * 179.97438 * 12 11 10 14 14 C 1.38608 * 120.52828 * 359.72498 * 12 11 10 15 15 C 1.50697 * 119.98869 * 180.27618 * 14 12 11 16 16 F 1.39893 * 109.47604 * 270.27418 * 15 14 12 17 17 F 1.39902 * 109.46920 * 30.27760 * 15 14 12 18 18 F 1.39903 * 109.46954 * 150.27029 * 15 14 12 19 19 C 1.38319 * 120.02276 * 0.55417 * 14 12 11 20 20 O 1.35650 * 120.24467 * 179.72747 * 19 14 12 21 21 H 0.97002 * 119.99489 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.02385 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.75059 * 180.02562 * 11 10 9 24 24 H 0.96703 * 113.99376 * 269.72395 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0462 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4400 0.7000 7 6 2.0084 -1.2117 0.0005 8 1 3.0498 -1.2339 0.2857 9 6 1.3532 -2.4046 -0.3715 10 6 0.2246 -2.3617 -1.2115 11 6 -0.4038 -3.5190 -1.5677 12 6 0.0624 -4.7462 -1.1073 13 9 -0.5721 -5.8827 -1.4693 14 6 1.1756 -4.8127 -0.2842 15 6 1.6738 -6.1491 0.2024 16 9 1.0451 -6.4695 1.4103 17 9 1.3814 -7.1309 -0.7504 18 9 3.0576 -6.0875 0.3989 19 6 1.8260 -3.6524 0.0953 20 8 2.9127 -3.7119 0.9051 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1437 -1.4133 -1.5738 23 1 -1.2692 -3.4823 -2.2128 24 1 2.7036 -3.6626 1.8480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575704592.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:15 Heat of formation + Delta-G solvation = -243.600690 kcal Electronic energy + Delta-G solvation = -18589.598372 eV Core-core repulsion = 14773.623148 eV Total energy + Delta-G solvation = -3815.975224 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.13698 -49.57547 -48.60850 -48.51821 -40.22238 -37.22226 -35.73071 -32.39219 -31.09224 -27.14282 -26.62322 -23.14942 -22.96652 -20.01690 -19.55937 -19.43851 -19.13467 -18.12818 -17.36175 -17.05660 -16.75119 -16.30254 -15.51571 -15.38460 -15.33211 -15.15188 -15.03740 -14.75213 -14.72018 -14.45815 -13.96329 -13.70861 -13.42472 -12.89988 -12.66539 -12.33874 -12.16573 -11.78634 -11.29255 -11.13520 -9.90056 -9.45154 -8.82965 -6.48313 0.25335 0.52621 1.41849 1.47329 1.55274 1.72803 2.17295 2.39126 2.77492 3.13350 3.18371 3.36235 3.54127 3.91672 4.27310 4.65629 4.83765 5.08044 5.08569 5.26637 5.64620 5.73031 5.92974 6.32027 6.57365 6.66537 7.06341 8.12874 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.007951 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.015097 B = 3520.750842 C = 4089.621818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.088 0.912 9 C 0.057 3.943 10 C -0.124 4.124 11 C -0.126 4.126 12 C -0.006 4.006 13 F -0.153 7.153 14 C -0.211 4.211 15 C 0.517 3.483 16 F -0.182 7.182 17 F -0.181 7.181 18 F -0.169 7.169 19 C 0.032 3.968 20 O -0.484 6.484 21 H 0.299 0.701 22 H 0.134 0.866 23 H 0.140 0.860 24 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -1.224 0.607 1.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.054 3.946 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.026 4.026 13 F -0.132 7.132 14 C -0.214 4.214 15 C 0.463 3.537 16 F -0.164 7.164 17 F -0.163 7.163 18 F -0.150 7.150 19 C -0.014 4.014 20 O -0.294 6.294 21 H 0.110 0.890 22 H 0.151 0.849 23 H 0.158 0.842 24 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.879 -1.199 0.109 1.491 hybrid contribution -0.128 0.082 0.543 0.564 sum 0.751 -1.117 0.652 1.495 Atomic orbital electron populations 1.69805 1.08910 1.31840 1.32031 1.26815 0.95536 1.04625 0.90873 0.85094 0.79041 0.75349 0.79765 1.18505 1.18965 1.18332 1.19780 0.98702 0.91221 1.38450 0.89368 1.18219 0.92532 0.92148 0.91728 1.21058 0.97940 0.97460 0.97917 1.20683 1.01537 0.90293 1.02000 1.16813 0.96065 0.82617 1.07132 1.91371 1.81399 1.49319 1.91138 1.20150 1.00753 0.92191 1.08267 1.18136 0.75500 0.85077 0.74998 1.93157 1.82473 1.93882 1.46880 1.93161 1.93258 1.65352 1.64514 1.93196 1.30250 1.96557 1.94977 1.17859 0.92730 0.90388 1.00457 1.84719 1.28808 1.95591 1.20282 0.88980 0.84853 0.84197 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.80 10.96 21.82 0.24 -35.57 14 2 C 0.04 1.75 5.14 85.24 0.44 2.18 14 3 Si 0.99 33.29 29.60 68.60 2.03 35.32 14 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 14 5 H -0.27 -8.47 7.11 99.48 0.71 -7.76 14 6 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 7 C -0.45 -21.57 8.71 23.37 0.20 -21.37 14 8 H 0.09 4.16 7.65 -2.91 -0.02 4.14 14 9 C 0.06 2.78 5.58 -21.19 -0.12 2.66 14 10 C -0.12 -5.76 8.64 22.46 0.19 -5.56 14 11 C -0.13 -5.41 9.95 22.05 0.22 -5.19 14 12 C -0.01 -0.26 7.16 22.57 0.16 -0.10 14 13 F -0.15 -6.58 15.41 44.97 0.69 -5.89 14 14 C -0.21 -9.48 5.46 -19.76 -0.11 -9.59 14 15 C 0.52 21.20 3.22 71.24 0.23 21.43 14 16 F -0.18 -7.13 17.30 44.97 0.78 -6.35 14 17 F -0.18 -7.35 15.47 44.97 0.70 -6.65 14 18 F -0.17 -6.78 15.31 44.97 0.69 -6.09 14 19 C 0.03 1.49 6.63 23.06 0.15 1.65 14 20 O -0.48 -20.41 10.73 -89.65 -0.96 -21.37 14 21 H 0.30 11.89 8.30 -92.71 -0.77 11.12 14 22 H 0.13 6.18 6.16 -2.91 -0.02 6.16 14 23 H 0.14 5.13 8.06 -2.91 -0.02 5.11 14 24 H 0.38 13.16 9.06 -74.06 -0.67 12.49 14 Total: -1.00 -51.33 235.81 6.15 -45.18 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.62 Total: 15.31 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 1.37 Total: -13.88 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.24 Total: -35.57 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.96 Total: -21.37 kcal Atomic # 9 Polarization: -27.84 SS G_CDS: 2.86 Total: -24.98 kcal Atomic # 14 Polarization: 33.29 SS G_CDS: 2.03 Total: 35.32 kcal Total: -51.33 6.15 -45.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575704592.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.422 kcal (2) G-P(sol) polarization free energy of solvation -51.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds