Wall clock time and date at job start Mon Mar 30 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99585 * 2 1 4 4 C 1.53006 * 109.46824 * 125.00082 * 3 2 1 5 5 H 1.08998 * 110.43770 * 52.46062 * 4 3 2 6 6 C 1.54891 * 110.60047 * 289.83873 * 4 3 2 7 7 C 1.54965 * 102.77797 * 203.35104 * 6 4 3 8 8 C 1.54263 * 104.15753 * 37.88824 * 7 6 4 9 9 H 1.09007 * 110.03387 * 95.75613 * 8 7 6 10 10 N 1.46899 * 110.03320 * 217.13544 * 8 7 6 11 11 C 1.46903 * 111.00040 * 272.91348 * 10 8 7 12 12 C 1.52996 * 109.47118 * 185.33173 * 11 10 8 13 13 C 1.50698 * 115.55510 * 65.07279 * 12 11 10 14 14 H 1.08000 * 120.00023 * 264.77473 * 13 12 11 15 15 C 1.37871 * 120.00212 * 84.77477 * 13 12 11 16 16 N 1.31523 * 119.99896 * 352.86176 * 15 13 12 17 17 Si 1.86797 * 120.00221 * 172.86634 * 15 13 12 18 18 H 1.48497 * 109.47549 * 89.99877 * 17 15 13 19 19 H 1.48505 * 109.46856 * 209.99903 * 17 15 13 20 20 H 1.48500 * 109.47296 * 329.99564 * 17 15 13 21 21 C 1.53008 * 117.49549 * 279.39901 * 12 11 10 22 22 C 1.53003 * 117.49789 * 210.74574 * 12 11 10 23 23 C 1.53872 * 106.64201 * 336.44465 * 8 7 6 24 24 H 1.07995 * 120.00469 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99529 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00163 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47439 * 5.00056 * 3 2 1 28 28 H 1.09002 * 109.47199 * 244.99658 * 3 2 1 29 29 H 1.09000 * 110.75406 * 321.64331 * 6 4 3 30 30 H 1.09001 * 110.75310 * 85.00994 * 6 4 3 31 31 H 1.08997 * 110.47920 * 279.23417 * 7 6 4 32 32 H 1.08999 * 110.52929 * 156.56631 * 7 6 4 33 33 H 1.00904 * 110.99626 * 36.85935 * 10 8 7 34 34 H 1.08997 * 109.47570 * 65.32274 * 11 10 8 35 35 H 1.09001 * 109.46892 * 305.32713 * 11 10 8 36 36 H 0.97000 * 119.99845 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.50094 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49647 * 145.02403 * 21 12 11 39 39 H 1.09002 * 117.50025 * 214.97734 * 22 12 11 40 40 H 1.09006 * 117.49954 * 359.97137 * 22 12 11 41 41 H 1.09004 * 110.03282 * 119.26349 * 23 8 7 42 42 H 1.09007 * 110.03377 * 240.64282 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6609 0.4408 1.1810 6 6 2.2630 1.4528 2.5192 7 6 3.3214 2.0633 3.4723 8 6 4.0896 3.0682 2.5892 9 1 3.6770 4.0690 2.7168 10 7 5.5150 3.0630 2.9442 11 6 5.7870 3.9981 4.0441 12 6 7.2946 4.0643 4.2961 13 6 8.1171 4.6392 3.1719 14 1 8.5808 3.9819 2.4512 15 6 8.2776 6.0042 3.0632 16 7 7.6020 6.8107 3.8526 17 14 9.4544 6.7083 1.7949 18 1 8.7275 6.9424 0.5213 19 1 10.0075 7.9935 2.2926 20 1 10.5638 5.7489 1.5625 21 6 7.9215 2.9441 5.1288 22 6 7.7601 4.3440 5.7266 23 6 3.9073 2.6045 1.1334 24 1 -0.5401 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.4083 2.1209 2.4134 30 1 1.9462 0.4712 2.8714 31 1 3.9934 1.2889 3.8421 32 1 2.8370 2.5775 4.3024 33 1 5.8265 2.1317 3.1761 34 1 5.2824 3.6539 4.9468 35 1 5.4194 4.9890 3.7778 36 1 7.7152 7.7710 3.7764 37 1 7.2599 2.1598 5.4967 38 1 8.9289 2.6232 4.8636 39 1 8.6614 4.9436 5.8544 40 1 6.9922 4.4813 6.4880 41 1 3.4055 3.3800 0.5546 42 1 4.8767 2.3765 0.6899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593621286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:57 Heat of formation + Delta-G solvation = 23.178057 kcal Electronic energy + Delta-G solvation = -18291.181328 eV Core-core repulsion = 15657.309490 eV Total energy + Delta-G solvation = -2633.871839 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.79011 -36.74132 -35.00140 -32.58830 -31.75748 -29.32920 -27.83850 -25.57797 -24.65773 -23.35452 -21.04378 -20.38783 -19.91619 -19.37944 -18.84398 -16.18163 -15.54014 -15.41805 -14.67339 -14.45249 -14.01593 -13.93196 -13.36188 -13.26740 -13.02212 -12.74116 -12.08080 -11.86279 -11.58765 -11.34433 -11.02452 -10.96715 -10.88193 -10.83899 -10.60378 -10.59191 -10.40817 -10.31480 -10.16071 -10.10496 -9.41533 -9.30187 -8.72669 -8.30880 -7.99853 -7.39725 -5.90296 -3.90999 2.17949 3.38062 3.44270 3.48228 4.52296 4.63674 4.74005 4.85542 4.97711 5.07636 5.17216 5.40282 5.48869 5.54288 5.60279 5.63898 5.73268 5.80650 5.83698 5.95544 5.98642 6.03827 6.13480 6.20991 6.24122 6.40667 6.48565 6.51640 6.55852 6.59865 6.65569 6.69095 6.72528 6.79514 6.99674 7.17010 7.52278 7.67655 8.02881 8.09479 8.28428 8.62860 9.07644 9.71646 11.19773 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027877 B = 0.004747 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.160501 B = 5897.461923 C = 6510.038667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.089 4.089 4 C -0.088 4.088 5 H 0.072 0.928 6 C -0.113 4.113 7 C -0.154 4.154 8 C 0.085 3.915 9 H 0.073 0.927 10 N -0.662 5.662 11 C 0.108 3.892 12 C 0.054 3.946 13 C -0.468 4.468 14 H 0.059 0.941 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.216 4.216 22 C -0.161 4.161 23 C -0.110 4.110 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.329 0.671 34 H -0.008 1.008 35 H 0.075 0.925 36 H 0.256 0.744 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 -10.580 -3.972 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.161 4.161 3 C -0.126 4.126 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.151 4.151 7 C -0.194 4.194 8 C -0.026 4.026 9 H 0.092 0.908 10 N -0.291 5.291 11 C -0.021 4.021 12 C 0.053 3.947 13 C -0.506 4.506 14 H 0.077 0.923 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.253 4.253 22 C -0.199 4.199 23 C -0.149 4.149 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.010 0.990 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.436 -9.897 -4.424 15.758 hybrid contribution 0.171 -0.015 0.249 0.303 sum -11.265 -9.912 -4.175 15.575 Atomic orbital electron populations 1.23790 0.96012 1.01510 1.02871 1.23023 0.95980 0.98725 0.98400 1.20852 0.97994 0.94968 0.98764 1.21976 0.95979 0.99003 0.93742 0.90938 1.22475 0.97536 1.00048 0.94994 1.23188 0.98512 0.99223 0.98445 1.22185 0.88863 0.97914 0.93623 0.90844 1.60417 1.13741 1.11634 1.43302 1.21551 0.96433 0.95576 0.88517 1.18834 0.90604 0.94736 0.90496 1.20301 1.29387 0.90886 1.10044 0.92324 1.24930 0.95689 0.97103 0.95739 1.70017 1.40546 1.02918 1.38945 0.86677 0.81585 0.78333 0.81840 1.20802 1.21514 1.20034 1.22980 1.01243 0.91618 1.09494 1.22524 1.02139 0.96729 0.98507 1.22256 0.99981 0.95819 0.96801 0.88770 0.88923 0.87667 0.91518 0.90925 0.91823 0.92318 0.91837 0.92247 0.85309 0.98971 0.90681 0.93401 0.92272 0.90595 0.90170 0.92229 0.92072 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.80 14.32 29.02 0.42 -1.39 16 2 C -0.14 -1.35 9.18 -36.02 -0.33 -1.68 16 3 C -0.09 -0.90 5.01 -27.88 -0.14 -1.04 16 4 C -0.09 -1.03 2.84 -88.96 -0.25 -1.28 16 5 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 6 C -0.11 -1.31 6.00 -24.70 -0.15 -1.46 16 7 C -0.15 -2.12 6.45 -25.03 -0.16 -2.28 16 8 C 0.09 1.38 3.23 -66.60 -0.21 1.16 16 9 H 0.07 1.28 7.74 -51.93 -0.40 0.88 16 10 N -0.66 -12.89 6.04 -105.55 -0.64 -13.53 16 11 C 0.11 2.42 5.39 -3.82 -0.02 2.40 16 12 C 0.05 1.33 1.53 -155.66 -0.24 1.09 16 13 C -0.47 -12.87 8.73 -34.44 -0.30 -13.18 16 14 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 15 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 16 N -0.89 -25.42 12.97 55.43 0.72 -24.71 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.22 -4.75 9.96 -26.69 -0.27 -5.01 16 22 C -0.16 -3.84 9.47 -26.69 -0.25 -4.09 16 23 C -0.11 -1.56 6.17 -25.62 -0.16 -1.72 16 24 H 0.09 0.80 7.84 -52.49 -0.41 0.39 16 25 H 0.09 0.71 8.06 -52.48 -0.42 0.29 16 26 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.73 7.97 -51.93 -0.41 0.31 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.33 6.07 8.18 -39.29 -0.32 5.75 16 34 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 35 H 0.07 1.90 7.94 -51.93 -0.41 1.49 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 42 H 0.08 1.21 7.92 -51.92 -0.41 0.80 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -27.92 339.68 -9.75 -37.67 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.76 Total: 5.57 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -2.16 Total: -26.72 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.08 Total: -38.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.92 -9.75 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593621286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.850 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds