Wall clock time and date at job start Mon Mar 30 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99585 * 2 1 4 4 C 1.53006 * 109.46824 * 125.00082 * 3 2 1 5 5 H 1.08998 * 110.43770 * 52.46062 * 4 3 2 6 6 C 1.54891 * 110.60047 * 289.83873 * 4 3 2 7 7 C 1.54965 * 102.77797 * 203.35104 * 6 4 3 8 8 C 1.54263 * 104.15753 * 37.88824 * 7 6 4 9 9 H 1.09007 * 110.03387 * 95.75613 * 8 7 6 10 10 N 1.46899 * 110.03320 * 217.13544 * 8 7 6 11 11 C 1.46903 * 111.00040 * 272.91348 * 10 8 7 12 12 C 1.52996 * 109.47118 * 185.33173 * 11 10 8 13 13 C 1.50698 * 115.55510 * 65.07279 * 12 11 10 14 14 H 1.08000 * 120.00023 * 264.77473 * 13 12 11 15 15 C 1.37871 * 120.00212 * 84.77477 * 13 12 11 16 16 N 1.31523 * 119.99896 * 352.86176 * 15 13 12 17 17 Si 1.86797 * 120.00221 * 172.86634 * 15 13 12 18 18 H 1.48497 * 109.47549 * 89.99877 * 17 15 13 19 19 H 1.48505 * 109.46856 * 209.99903 * 17 15 13 20 20 H 1.48500 * 109.47296 * 329.99564 * 17 15 13 21 21 C 1.53008 * 117.49549 * 279.39901 * 12 11 10 22 22 C 1.53003 * 117.49789 * 210.74574 * 12 11 10 23 23 C 1.53872 * 106.64201 * 336.44465 * 8 7 6 24 24 H 1.07995 * 120.00469 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99529 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00163 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47439 * 5.00056 * 3 2 1 28 28 H 1.09002 * 109.47199 * 244.99658 * 3 2 1 29 29 H 1.09000 * 110.75406 * 321.64331 * 6 4 3 30 30 H 1.09001 * 110.75310 * 85.00994 * 6 4 3 31 31 H 1.08997 * 110.47920 * 279.23417 * 7 6 4 32 32 H 1.08999 * 110.52929 * 156.56631 * 7 6 4 33 33 H 1.00904 * 110.99626 * 36.85935 * 10 8 7 34 34 H 1.08997 * 109.47570 * 65.32274 * 11 10 8 35 35 H 1.09001 * 109.46892 * 305.32713 * 11 10 8 36 36 H 0.97000 * 119.99845 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.50094 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49647 * 145.02403 * 21 12 11 39 39 H 1.09002 * 117.50025 * 214.97734 * 22 12 11 40 40 H 1.09006 * 117.49954 * 359.97137 * 22 12 11 41 41 H 1.09004 * 110.03282 * 119.26349 * 23 8 7 42 42 H 1.09007 * 110.03377 * 240.64282 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6609 0.4408 1.1810 6 6 2.2630 1.4528 2.5192 7 6 3.3214 2.0633 3.4723 8 6 4.0896 3.0682 2.5892 9 1 3.6770 4.0690 2.7168 10 7 5.5150 3.0630 2.9442 11 6 5.7870 3.9981 4.0441 12 6 7.2946 4.0643 4.2961 13 6 8.1171 4.6392 3.1719 14 1 8.5808 3.9819 2.4512 15 6 8.2776 6.0042 3.0632 16 7 7.6020 6.8107 3.8526 17 14 9.4544 6.7083 1.7949 18 1 8.7275 6.9424 0.5213 19 1 10.0075 7.9935 2.2926 20 1 10.5638 5.7489 1.5625 21 6 7.9215 2.9441 5.1288 22 6 7.7601 4.3440 5.7266 23 6 3.9073 2.6045 1.1334 24 1 -0.5401 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.4083 2.1209 2.4134 30 1 1.9462 0.4712 2.8714 31 1 3.9934 1.2889 3.8421 32 1 2.8370 2.5775 4.3024 33 1 5.8265 2.1317 3.1761 34 1 5.2824 3.6539 4.9468 35 1 5.4194 4.9890 3.7778 36 1 7.7152 7.7710 3.7764 37 1 7.2599 2.1598 5.4967 38 1 8.9289 2.6232 4.8636 39 1 8.6614 4.9436 5.8544 40 1 6.9922 4.4813 6.4880 41 1 3.4055 3.3800 0.5546 42 1 4.8767 2.3765 0.6899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593621286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:56 Heat of formation + Delta-G solvation = 9.317104 kcal Electronic energy + Delta-G solvation = -18291.782385 eV Core-core repulsion = 15657.309490 eV Total energy + Delta-G solvation = -2634.472895 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97621 -38.45914 -36.07744 -34.01098 -33.67940 -30.32828 -29.09640 -27.54880 -25.97278 -24.77638 -22.87949 -21.48244 -20.95320 -20.62395 -20.37957 -18.05225 -16.81245 -16.61310 -16.43287 -15.84811 -15.35274 -15.19642 -14.75702 -14.66710 -14.37946 -13.86660 -13.63412 -13.37763 -12.92523 -12.85880 -12.77135 -12.41626 -12.36315 -12.17981 -12.06986 -11.96288 -11.85510 -11.61444 -11.42843 -11.28272 -11.15793 -10.70701 -10.35472 -10.07852 -9.89896 -8.93739 -8.02603 -6.08375 1.43160 1.44377 1.49471 1.53697 2.48787 3.27407 3.32146 3.63508 3.76113 3.80469 3.94584 4.17586 4.36402 4.41527 4.50129 4.57052 4.61469 4.66686 4.73062 4.74390 4.79463 4.82190 4.84133 4.94988 4.99964 5.05718 5.10010 5.15011 5.18852 5.23981 5.29005 5.37197 5.46239 5.59532 5.64762 5.78007 5.83714 5.90450 5.98676 6.44099 6.56986 6.82959 6.95097 7.56611 9.06583 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027877 B = 0.004747 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.160501 B = 5897.461923 C = 6510.038667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.085 4.085 4 C -0.078 4.078 5 H 0.076 0.924 6 C -0.104 4.104 7 C -0.148 4.148 8 C 0.081 3.919 9 H 0.053 0.947 10 N -0.673 5.673 11 C 0.126 3.874 12 C 0.026 3.974 13 C -0.480 4.480 14 H 0.047 0.953 15 C 0.021 3.979 16 N -0.913 5.913 17 Si 0.945 3.055 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.270 1.270 21 C -0.187 4.187 22 C -0.169 4.169 23 C -0.107 4.107 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.337 0.663 34 H 0.003 0.997 35 H 0.037 0.963 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 -12.306 -4.433 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C -0.122 4.122 4 C -0.097 4.097 5 H 0.094 0.906 6 C -0.141 4.141 7 C -0.187 4.187 8 C -0.029 4.029 9 H 0.071 0.929 10 N -0.302 5.302 11 C -0.003 4.003 12 C 0.026 3.974 13 C -0.518 4.518 14 H 0.066 0.934 15 C -0.178 4.178 16 N -0.552 5.552 17 Si 0.771 3.229 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.224 4.224 22 C -0.207 4.207 23 C -0.145 4.145 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.021 0.979 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.320 -11.641 -4.891 17.641 hybrid contribution 0.429 0.512 0.386 0.771 sum -11.891 -11.129 -4.505 16.898 Atomic orbital electron populations 1.23957 0.95906 1.02262 1.01571 1.23018 0.96238 0.98443 0.99542 1.20788 0.97708 0.95682 0.98026 1.21888 0.95832 0.97461 0.94530 0.90592 1.22429 0.96871 1.00703 0.94140 1.23082 0.98808 0.98497 0.98311 1.22252 0.87282 0.97848 0.95552 0.92899 1.60330 1.16209 1.11528 1.42175 1.21157 0.94961 0.94484 0.89743 1.18945 0.91624 0.96819 0.90035 1.20543 1.29561 0.91070 1.10620 0.93439 1.25585 0.97100 0.97543 0.97560 1.70122 1.41754 1.02909 1.40437 0.85773 0.79809 0.77659 0.79637 1.20654 1.21230 1.19503 1.22961 1.01467 0.91150 1.06820 1.22447 1.01531 0.98167 0.98574 1.22196 0.99861 0.97295 0.95147 0.88598 0.87678 0.86985 0.91513 0.90896 0.91410 0.90798 0.91564 0.92438 0.84481 0.97869 0.94474 0.93586 0.89329 0.90602 0.92488 0.91186 0.91979 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 14.32 67.78 0.97 -2.02 16 2 C -0.15 -2.53 9.18 25.65 0.24 -2.30 16 3 C -0.08 -1.56 5.01 29.85 0.15 -1.41 16 4 C -0.08 -1.67 2.84 -9.72 -0.03 -1.70 16 5 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 6 C -0.10 -2.17 6.00 31.91 0.19 -1.98 16 7 C -0.15 -3.83 6.45 31.69 0.20 -3.62 16 8 C 0.08 2.60 3.23 45.64 0.15 2.74 16 9 H 0.05 1.89 7.74 -2.38 -0.02 1.88 16 10 N -0.67 -26.08 6.04 -487.84 -2.95 -29.03 16 11 C 0.13 5.69 5.39 86.30 0.47 6.16 16 12 C 0.03 1.30 1.53 -52.93 -0.08 1.22 16 13 C -0.48 -26.65 8.73 25.60 0.22 -26.43 16 14 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 15 C 0.02 1.17 5.39 84.65 0.46 1.63 16 16 N -0.91 -53.40 12.97 21.45 0.28 -53.13 16 17 Si 0.94 44.82 29.54 68.60 2.03 46.85 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.19 -7.92 9.96 30.62 0.30 -7.62 16 22 C -0.17 -8.04 9.47 30.62 0.29 -7.75 16 23 C -0.11 -2.95 6.17 31.32 0.19 -2.76 16 24 H 0.10 1.39 7.84 -2.91 -0.02 1.37 16 25 H 0.10 1.31 8.06 -2.91 -0.02 1.28 16 26 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.07 1.23 7.68 -2.39 -0.02 1.21 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.38 7.97 -2.39 -0.02 1.36 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.69 7.57 -2.39 -0.02 1.68 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.34 12.06 8.18 -89.69 -0.73 11.32 16 34 H 0.00 0.14 8.09 -2.39 -0.02 0.12 16 35 H 0.04 1.94 7.94 -2.39 -0.02 1.92 16 36 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.22 16 38 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 39 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 41 H 0.06 1.68 7.84 -2.39 -0.02 1.66 16 42 H 0.06 1.94 7.92 -2.38 -0.02 1.92 16 Total: -1.00 -59.55 339.68 3.30 -56.25 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.22 Total: 24.90 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 3.72 Total: -45.85 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.67 Total: -82.16 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -59.55 3.30 -56.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593621286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.570 kcal (2) G-P(sol) polarization free energy of solvation -59.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds