Wall clock time and date at job start Mon Mar 30 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00337 * 2 1 4 4 C 1.53003 * 109.47039 * 125.00281 * 3 2 1 5 5 H 1.09002 * 110.05668 * 306.42164 * 4 3 2 6 6 C 1.53867 * 110.03087 * 67.83841 * 4 3 2 7 7 C 1.54266 * 106.60174 * 119.28685 * 6 4 3 8 8 C 1.54891 * 104.19422 * 23.60530 * 7 6 4 9 9 H 1.09003 * 110.91259 * 80.44998 * 8 7 6 10 10 N 1.46896 * 110.75871 * 203.74425 * 8 7 6 11 11 C 1.46896 * 111.00365 * 268.33225 * 10 8 7 12 12 C 1.53000 * 109.47306 * 184.02234 * 11 10 8 13 13 C 1.50696 * 115.54907 * 301.96173 * 12 11 10 14 14 H 1.07997 * 119.99841 * 99.55656 * 13 12 11 15 15 C 1.37879 * 120.00112 * 279.55126 * 13 12 11 16 16 N 1.31509 * 119.99743 * 357.01422 * 15 13 12 17 17 Si 1.86794 * 119.99899 * 177.01715 * 15 13 12 18 18 H 1.48505 * 109.47470 * 90.00012 * 17 15 13 19 19 H 1.48495 * 109.47186 * 329.99973 * 17 15 13 20 20 H 1.48504 * 109.47025 * 210.00023 * 17 15 13 21 21 C 1.53004 * 117.51459 * 87.66675 * 12 11 10 22 22 C 1.52997 * 60.00003 * 107.48023 * 21 12 11 23 23 C 1.54266 * 110.03091 * 185.00696 * 4 3 2 24 24 H 1.07995 * 119.99577 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.99785 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99479 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46534 * 5.00891 * 3 2 1 28 28 H 1.08996 * 109.47764 * 245.00460 * 3 2 1 29 29 H 1.09012 * 110.03077 * 238.57107 * 6 4 3 30 30 H 1.09000 * 110.03420 * 359.94955 * 6 4 3 31 31 H 1.09000 * 110.47877 * 264.93191 * 7 6 4 32 32 H 1.09000 * 110.48559 * 142.28537 * 7 6 4 33 33 H 1.00896 * 110.99846 * 144.36994 * 10 8 7 34 34 H 1.09000 * 109.46927 * 64.02112 * 11 10 8 35 35 H 1.09001 * 109.47105 * 304.02615 * 11 10 8 36 36 H 0.97002 * 120.00620 * 5.86452 * 16 15 13 37 37 H 1.09006 * 117.49306 * 214.97103 * 21 12 11 38 38 H 1.08993 * 117.49830 * 359.97438 * 21 12 11 39 39 H 1.08998 * 117.49484 * 252.50691 * 22 21 12 40 40 H 1.09002 * 117.50312 * 107.49044 * 22 21 12 41 41 H 1.08994 * 110.48785 * 98.42819 * 23 4 3 42 42 H 1.08998 * 110.60131 * 335.83500 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 1 2.5022 1.1227 2.1089 6 6 4.1528 0.2968 0.9696 7 6 5.4805 1.0815 0.9346 8 6 5.1712 2.3861 1.7100 9 1 5.2185 2.2196 2.7862 10 7 6.0907 3.4597 1.3105 11 6 7.2745 3.4896 2.1797 12 6 8.1578 4.6792 1.7979 13 6 8.6338 4.7028 0.3683 14 1 8.1302 5.3232 -0.3583 15 6 9.7122 3.9325 -0.0121 16 7 10.3619 3.2225 0.8842 17 14 10.2504 3.8974 -1.8005 18 1 11.2494 4.9702 -2.0380 19 1 9.0716 4.1161 -2.6765 20 1 10.8582 2.5780 -2.1087 21 6 7.8609 6.0232 2.4661 22 6 9.1049 5.2277 2.8670 23 6 3.7227 2.7112 1.2680 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1315 0.0897 28 1 2.6214 1.4026 -0.9313 29 1 4.1621 -0.4164 1.7940 30 1 4.0025 -0.2266 0.0253 31 1 5.7633 1.3068 -0.0937 32 1 6.2694 0.5188 1.4338 33 1 5.6228 4.3536 1.3059 34 1 7.8382 2.5647 2.0579 35 1 6.9600 3.5892 3.2186 36 1 10.0326 3.1729 1.7953 37 1 8.0100 6.9246 1.8715 38 1 7.0361 6.0602 3.1776 39 1 9.0984 4.7414 3.8425 40 1 10.0723 5.6057 2.5364 41 1 3.2288 3.3379 2.0106 42 1 3.7219 3.2019 0.2947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593621288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:02 Heat of formation + Delta-G solvation = 2.693986 kcal Electronic energy + Delta-G solvation = -18367.210660 eV Core-core repulsion = 15732.450565 eV Total energy + Delta-G solvation = -2634.760095 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00629 -38.79270 -36.10731 -34.09227 -33.77367 -30.33113 -29.30559 -27.06484 -26.02767 -24.94690 -23.04755 -21.47674 -21.36171 -20.86001 -19.83729 -18.49789 -17.25133 -16.57629 -16.11414 -15.92778 -15.60178 -15.05150 -14.93429 -14.64211 -14.29876 -14.17496 -13.80474 -13.47056 -13.22744 -12.94000 -12.60727 -12.54713 -12.28274 -12.20771 -11.93392 -11.90441 -11.74669 -11.48795 -11.45136 -11.30617 -11.15276 -10.58798 -10.33947 -10.15775 -10.09983 -9.10579 -8.41619 -6.12411 1.46099 1.55252 1.64571 1.81066 2.63695 3.12383 3.35236 3.45754 3.61375 3.76973 3.99012 4.17098 4.19955 4.30975 4.34215 4.41724 4.47736 4.54759 4.56982 4.61180 4.68283 4.72578 4.81442 4.81657 4.89007 5.00568 5.05295 5.08525 5.11939 5.13881 5.20134 5.31817 5.38348 5.45771 5.53451 5.55298 5.81241 5.95867 6.22781 6.34142 6.44810 6.70143 6.83911 7.65570 8.98459 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.005032 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.763555 B = 5562.582070 C = 6168.785495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.084 4.084 4 C -0.075 4.075 5 H 0.079 0.921 6 C -0.110 4.110 7 C -0.113 4.113 8 C 0.077 3.923 9 H 0.040 0.960 10 N -0.669 5.669 11 C 0.121 3.879 12 C -0.001 4.001 13 C -0.548 4.548 14 H 0.038 0.962 15 C -0.022 4.022 16 N -0.941 5.941 17 Si 1.109 2.891 18 H -0.279 1.279 19 H -0.276 1.276 20 H -0.289 1.289 21 C -0.174 4.174 22 C -0.187 4.187 23 C -0.113 4.113 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.338 0.662 34 H 0.031 0.969 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.710 -4.496 1.003 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.177 4.177 3 C -0.121 4.121 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.033 4.033 9 H 0.058 0.942 10 N -0.299 5.299 11 C -0.009 4.009 12 C -0.002 4.002 13 C -0.586 4.586 14 H 0.056 0.944 15 C -0.221 4.221 16 N -0.579 5.579 17 Si 0.933 3.067 18 H -0.205 1.205 19 H -0.202 1.202 20 H -0.215 1.215 21 C -0.211 4.211 22 C -0.225 4.225 23 C -0.151 4.151 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.157 0.843 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.255 -5.456 -0.508 17.154 hybrid contribution -0.895 0.926 2.020 2.395 sum -17.150 -4.531 1.512 17.803 Atomic orbital electron populations 1.23993 0.95808 1.02442 1.01249 1.23050 0.96274 0.98579 0.99826 1.20833 0.97684 0.95725 0.97901 1.21586 0.95165 0.93784 0.98841 0.90276 1.22175 0.92933 0.97497 1.02228 1.22315 0.97315 0.95478 1.00056 1.22609 0.92161 0.92293 0.96243 0.94243 1.60196 1.07400 1.07674 1.54669 1.21254 0.91143 0.97510 0.90987 1.19258 0.97021 0.90852 0.93031 1.21367 1.16435 1.27619 0.93215 0.94419 1.26822 0.94099 0.93038 1.08108 1.70793 1.40253 1.41949 1.04897 0.83026 0.75936 0.76421 0.71319 1.20519 1.20160 1.21514 1.22858 0.98436 0.96288 1.03517 1.22684 0.94110 1.06528 0.99199 1.22544 0.92979 0.97640 1.01895 0.88234 0.87663 0.87186 0.90951 0.91443 0.91376 0.90960 0.92770 0.94137 0.84330 0.95011 0.97220 0.92681 0.90443 0.88928 0.90341 0.92287 0.90866 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.96 14.32 67.78 0.97 -1.99 16 2 C -0.16 -2.70 9.01 25.64 0.23 -2.47 16 3 C -0.08 -1.57 4.79 29.85 0.14 -1.43 16 4 C -0.07 -1.56 2.92 -10.07 -0.03 -1.59 16 5 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 6 C -0.11 -2.59 6.04 31.32 0.19 -2.40 16 7 C -0.11 -3.63 6.51 31.67 0.21 -3.42 16 8 C 0.08 2.44 3.23 46.21 0.15 2.59 16 9 H 0.04 1.27 7.76 -2.39 -0.02 1.25 16 10 N -0.67 -26.27 6.19 -484.93 -3.00 -29.27 16 11 C 0.12 5.39 5.41 86.30 0.47 5.86 16 12 C 0.00 -0.04 1.07 -52.93 -0.06 -0.10 16 13 C -0.55 -30.65 8.58 25.60 0.22 -30.43 16 14 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 15 C -0.02 -1.27 5.44 84.66 0.46 -0.81 16 16 N -0.94 -57.38 13.54 21.45 0.29 -57.09 16 17 Si 1.11 52.07 29.90 68.60 2.05 54.12 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 C -0.17 -7.31 9.94 30.59 0.30 -7.00 16 22 C -0.19 -8.73 8.73 30.59 0.27 -8.47 16 23 C -0.11 -2.77 5.74 31.67 0.18 -2.59 16 24 H 0.10 1.37 7.84 -2.91 -0.02 1.34 16 25 H 0.11 1.31 8.06 -2.91 -0.02 1.29 16 26 H 0.11 1.79 7.63 -2.91 -0.02 1.77 16 27 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.59 7.18 -2.39 -0.02 1.57 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.34 12.51 8.38 -89.70 -0.75 11.75 16 34 H 0.03 1.62 7.79 -2.39 -0.02 1.60 16 35 H 0.01 0.41 7.95 -2.39 -0.02 0.39 16 36 H 0.26 16.02 6.15 -92.71 -0.57 15.45 16 37 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 38 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.86 7.86 -2.39 -0.02 1.84 16 Total: -1.00 -62.42 336.28 3.45 -58.97 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.40 Total: 27.52 kcal Atomic # 6 Polarization: -57.96 SS G_CDS: 3.70 Total: -54.25 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.71 Total: -86.36 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.05 Total: 54.12 kcal Total: -62.42 3.45 -58.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593621288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.662 kcal (2) G-P(sol) polarization free energy of solvation -62.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds