Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00222 * 2 1 4 4 C 1.52994 * 109.47422 * 125.00190 * 3 2 1 5 5 H 1.09004 * 110.01668 * 306.39146 * 4 3 2 6 6 C 1.54263 * 110.07735 * 67.80653 * 4 3 2 7 7 C 1.54882 * 104.19599 * 142.91720 * 6 4 3 8 8 C 1.54891 * 102.74942 * 322.05960 * 7 6 4 9 9 H 1.08996 * 110.59484 * 279.20474 * 8 7 6 10 10 N 1.46901 * 110.48284 * 156.62049 * 8 7 6 11 11 C 1.46903 * 111.00031 * 90.23044 * 10 8 7 12 12 C 1.53004 * 109.47339 * 174.88620 * 11 10 8 13 13 C 1.50696 * 115.54497 * 296.15075 * 12 11 10 14 14 H 1.08007 * 120.00151 * 95.20484 * 13 12 11 15 15 C 1.37877 * 120.00128 * 275.19949 * 13 12 11 16 16 N 1.31519 * 119.99891 * 355.13538 * 15 13 12 17 17 Si 1.86802 * 120.00004 * 175.13637 * 15 13 12 18 18 H 1.48497 * 109.46783 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47137 * 299.99925 * 17 15 13 20 20 H 1.48496 * 109.47046 * 60.00282 * 17 15 13 21 21 C 1.53000 * 117.50036 * 81.81994 * 12 11 10 22 22 C 1.52998 * 117.49987 * 150.47986 * 12 11 10 23 23 C 1.53873 * 110.03067 * 185.00170 * 4 3 2 24 24 H 1.07998 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99867 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99839 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46629 * 4.99607 * 3 2 1 28 28 H 1.09000 * 109.46685 * 245.00127 * 3 2 1 29 29 H 1.08999 * 110.48494 * 261.59923 * 6 4 3 30 30 H 1.08995 * 110.48279 * 24.10542 * 6 4 3 31 31 H 1.09004 * 110.75855 * 203.74461 * 7 6 4 32 32 H 1.08997 * 110.75879 * 80.37577 * 7 6 4 33 33 H 1.00897 * 111.00524 * 326.27325 * 10 8 7 34 34 H 1.08996 * 109.47321 * 54.87821 * 11 10 8 35 35 H 1.09002 * 109.46548 * 294.88013 * 11 10 8 36 36 H 0.96994 * 119.99761 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.49608 * 215.00666 * 21 12 11 38 38 H 1.08999 * 117.49867 * 0.02562 * 21 12 11 39 39 H 1.08999 * 117.49893 * 359.97438 * 22 12 11 40 40 H 1.08996 * 117.49514 * 144.99479 * 22 12 11 41 41 H 1.09005 * 110.03506 * 121.38207 * 23 4 3 42 42 H 1.08992 * 110.03263 * 359.94842 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 1 2.5014 1.1234 2.1085 6 6 4.1557 0.2941 0.9704 7 6 5.4225 0.9810 1.5382 8 6 5.2342 2.4564 1.1057 9 1 5.5347 2.5927 0.0669 10 7 6.0009 3.3510 1.9831 11 6 7.3556 3.5690 1.4585 12 6 8.0784 4.6017 2.3258 13 6 7.4785 5.9840 2.3262 14 1 6.7874 6.2726 3.1044 15 6 7.8119 6.8805 1.3331 16 7 8.7247 6.5640 0.4408 17 14 6.9670 8.5447 1.2550 18 1 7.5001 9.3169 0.1041 19 1 5.5045 8.3500 1.0863 20 1 7.2252 9.2904 2.5129 21 6 8.7187 4.1090 3.6251 22 6 9.6006 4.4920 2.4341 23 6 3.7209 2.7079 1.2676 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.9374 -0.6199 1.5226 30 1 4.2799 0.0773 -0.0905 31 1 6.3233 0.5596 1.0920 32 1 5.4530 0.8978 2.6246 33 1 6.0314 2.9938 2.9262 34 1 7.2940 3.9345 0.4336 35 1 7.9076 2.6292 1.4766 36 1 8.9590 7.1945 -0.2580 37 1 8.7060 4.7849 4.4802 38 1 8.6254 3.0492 3.8619 39 1 10.0871 3.6840 1.8878 40 1 10.1681 5.4199 2.5056 41 1 3.5200 3.1654 2.2363 42 1 3.3622 3.3548 0.4671 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593621289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = 22.456720 kcal Electronic energy + Delta-G solvation = -18269.558500 eV Core-core repulsion = 15635.655382 eV Total energy + Delta-G solvation = -2633.903118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.82357 -36.75565 -34.98280 -32.67879 -31.73887 -29.28701 -27.92156 -25.59246 -24.65452 -23.31988 -21.04108 -20.66246 -19.73070 -19.28309 -18.83621 -16.15796 -15.95639 -15.20624 -14.77539 -14.49248 -14.03434 -13.64500 -13.42573 -13.01557 -12.95453 -12.92155 -12.27482 -11.84553 -11.75033 -11.54867 -11.03626 -10.89291 -10.79724 -10.64442 -10.60858 -10.55807 -10.54275 -10.37766 -10.15627 -10.07764 -9.41566 -9.24831 -8.85335 -8.26643 -7.97281 -7.41640 -5.88698 -3.90720 2.16652 3.40359 3.44037 3.48440 4.52637 4.57545 4.78154 4.80624 4.99292 5.09772 5.12984 5.41130 5.45028 5.51836 5.55634 5.64629 5.72039 5.74167 5.82238 5.94668 5.98923 6.06698 6.13645 6.17204 6.24894 6.37978 6.42280 6.50867 6.54942 6.56844 6.63288 6.68531 6.71595 6.81377 6.98464 7.21202 7.57787 7.64941 8.02440 8.07411 8.25589 8.62950 9.07887 9.72061 11.20520 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.004937 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.394341 B = 5670.118404 C = 6467.445130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.089 4.089 4 C -0.087 4.087 5 H 0.068 0.932 6 C -0.114 4.114 7 C -0.155 4.155 8 C 0.086 3.914 9 H 0.075 0.925 10 N -0.662 5.662 11 C 0.109 3.891 12 C 0.050 3.950 13 C -0.467 4.467 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.290 1.290 19 H -0.277 1.277 20 H -0.280 1.280 21 C -0.217 4.217 22 C -0.153 4.153 23 C -0.109 4.109 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.331 0.669 34 H 0.070 0.930 35 H -0.006 1.006 36 H 0.257 0.743 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 -12.427 -0.365 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.163 4.163 3 C -0.126 4.126 4 C -0.106 4.106 5 H 0.087 0.913 6 C -0.152 4.152 7 C -0.195 4.195 8 C -0.025 4.025 9 H 0.094 0.906 10 N -0.291 5.291 11 C -0.020 4.020 12 C 0.049 3.951 13 C -0.505 4.505 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.717 3.283 18 H -0.216 1.216 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.255 4.255 22 C -0.192 4.192 23 C -0.148 4.148 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.012 0.988 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.658 -11.738 -0.820 15.876 hybrid contribution 0.050 -0.049 0.032 0.077 sum -10.608 -11.787 -0.788 15.878 Atomic orbital electron populations 1.23819 0.96038 1.01569 1.02779 1.23048 0.95914 0.98871 0.98474 1.20942 0.97992 0.94840 0.98875 1.21743 0.95349 0.95886 0.97649 0.91312 1.22341 0.94765 0.97436 1.00668 1.23263 0.97510 0.98159 1.00564 1.22415 0.93802 0.88667 0.97599 0.90631 1.60294 1.16504 1.48078 1.04175 1.21543 0.86409 0.94255 0.99776 1.18836 0.90438 0.94376 0.91438 1.20263 1.25394 0.94666 1.10225 0.92442 1.24932 0.94761 0.97962 0.95831 1.70011 1.30642 1.35836 1.16090 0.86725 0.80181 0.84202 0.77211 1.21616 1.20221 1.20534 1.22987 1.10626 0.97927 0.93931 1.22489 0.96276 1.00355 1.00037 1.22212 0.94640 0.95208 1.02710 0.88707 0.88889 0.87607 0.91525 0.90853 0.92381 0.91746 0.92135 0.91636 0.85122 0.91176 0.98757 0.93355 0.90642 0.92345 0.92393 0.89791 0.91002 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.83 14.32 29.01 0.42 -1.41 16 2 C -0.15 -1.39 9.16 -36.03 -0.33 -1.72 16 3 C -0.09 -0.93 4.79 -27.88 -0.13 -1.07 16 4 C -0.09 -1.00 2.91 -89.51 -0.26 -1.27 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -1.28 5.81 -25.08 -0.15 -1.43 16 7 C -0.16 -2.08 6.46 -24.74 -0.16 -2.24 16 8 C 0.09 1.37 3.19 -66.05 -0.21 1.16 16 9 H 0.08 1.29 7.74 -51.93 -0.40 0.89 16 10 N -0.66 -12.81 6.15 -104.97 -0.65 -13.45 16 11 C 0.11 2.42 5.43 -3.82 -0.02 2.40 16 12 C 0.05 1.23 1.63 -155.66 -0.25 0.97 16 13 C -0.47 -12.87 8.72 -34.44 -0.30 -13.17 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 16 N -0.89 -25.48 12.66 55.43 0.70 -24.78 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.22 -4.80 9.96 -26.69 -0.27 -5.06 16 22 C -0.15 -3.68 9.16 -26.70 -0.24 -3.93 16 23 C -0.11 -1.55 6.19 -25.62 -0.16 -1.71 16 24 H 0.09 0.81 7.84 -52.49 -0.41 0.40 16 25 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 26 H 0.11 0.94 7.88 -52.49 -0.41 0.53 16 27 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 28 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.70 7.76 -51.93 -0.40 0.30 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 33 H 0.33 6.07 8.28 -39.29 -0.33 5.74 16 34 H 0.07 1.74 7.95 -51.93 -0.41 1.33 16 35 H -0.01 -0.12 8.10 -51.93 -0.42 -0.54 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 41 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 42 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -27.97 338.85 -9.78 -37.75 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.76 Total: 5.42 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.17 Total: -26.71 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.06 Total: -38.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.97 -9.78 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593621289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.207 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds