Wall clock time and date at job start Mon Mar 30 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00222 * 2 1 4 4 C 1.52994 * 109.47422 * 125.00190 * 3 2 1 5 5 H 1.09004 * 110.01668 * 306.39146 * 4 3 2 6 6 C 1.54263 * 110.07735 * 67.80653 * 4 3 2 7 7 C 1.54882 * 104.19599 * 142.91720 * 6 4 3 8 8 C 1.54891 * 102.74942 * 322.05960 * 7 6 4 9 9 H 1.08996 * 110.59484 * 279.20474 * 8 7 6 10 10 N 1.46901 * 110.48284 * 156.62049 * 8 7 6 11 11 C 1.46903 * 111.00031 * 90.23044 * 10 8 7 12 12 C 1.53004 * 109.47339 * 174.88620 * 11 10 8 13 13 C 1.50696 * 115.54497 * 296.15075 * 12 11 10 14 14 H 1.08007 * 120.00151 * 95.20484 * 13 12 11 15 15 C 1.37877 * 120.00128 * 275.19949 * 13 12 11 16 16 N 1.31519 * 119.99891 * 355.13538 * 15 13 12 17 17 Si 1.86802 * 120.00004 * 175.13637 * 15 13 12 18 18 H 1.48497 * 109.46783 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47137 * 299.99925 * 17 15 13 20 20 H 1.48496 * 109.47046 * 60.00282 * 17 15 13 21 21 C 1.53000 * 117.50036 * 81.81994 * 12 11 10 22 22 C 1.52998 * 117.49987 * 150.47986 * 12 11 10 23 23 C 1.53873 * 110.03067 * 185.00170 * 4 3 2 24 24 H 1.07998 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99867 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99839 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46629 * 4.99607 * 3 2 1 28 28 H 1.09000 * 109.46685 * 245.00127 * 3 2 1 29 29 H 1.08999 * 110.48494 * 261.59923 * 6 4 3 30 30 H 1.08995 * 110.48279 * 24.10542 * 6 4 3 31 31 H 1.09004 * 110.75855 * 203.74461 * 7 6 4 32 32 H 1.08997 * 110.75879 * 80.37577 * 7 6 4 33 33 H 1.00897 * 111.00524 * 326.27325 * 10 8 7 34 34 H 1.08996 * 109.47321 * 54.87821 * 11 10 8 35 35 H 1.09002 * 109.46548 * 294.88013 * 11 10 8 36 36 H 0.96994 * 119.99761 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.49608 * 215.00666 * 21 12 11 38 38 H 1.08999 * 117.49867 * 0.02562 * 21 12 11 39 39 H 1.08999 * 117.49893 * 359.97438 * 22 12 11 40 40 H 1.08996 * 117.49514 * 144.99479 * 22 12 11 41 41 H 1.09005 * 110.03506 * 121.38207 * 23 4 3 42 42 H 1.08992 * 110.03263 * 359.94842 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 1 2.5014 1.1234 2.1085 6 6 4.1557 0.2941 0.9704 7 6 5.4225 0.9810 1.5382 8 6 5.2342 2.4564 1.1057 9 1 5.5347 2.5927 0.0669 10 7 6.0009 3.3510 1.9831 11 6 7.3556 3.5690 1.4585 12 6 8.0784 4.6017 2.3258 13 6 7.4785 5.9840 2.3262 14 1 6.7874 6.2726 3.1044 15 6 7.8119 6.8805 1.3331 16 7 8.7247 6.5640 0.4408 17 14 6.9670 8.5447 1.2550 18 1 7.5001 9.3169 0.1041 19 1 5.5045 8.3500 1.0863 20 1 7.2252 9.2904 2.5129 21 6 8.7187 4.1090 3.6251 22 6 9.6006 4.4920 2.4341 23 6 3.7209 2.7079 1.2676 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.9374 -0.6199 1.5226 30 1 4.2799 0.0773 -0.0905 31 1 6.3233 0.5596 1.0920 32 1 5.4530 0.8978 2.6246 33 1 6.0314 2.9938 2.9262 34 1 7.2940 3.9345 0.4336 35 1 7.9076 2.6292 1.4766 36 1 8.9590 7.1945 -0.2580 37 1 8.7060 4.7849 4.4802 38 1 8.6254 3.0492 3.8619 39 1 10.0871 3.6840 1.8878 40 1 10.1681 5.4199 2.5056 41 1 3.5200 3.1654 2.2363 42 1 3.3622 3.3548 0.4671 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593621289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:04 Heat of formation + Delta-G solvation = 8.492559 kcal Electronic energy + Delta-G solvation = -18270.164031 eV Core-core repulsion = 15635.655382 eV Total energy + Delta-G solvation = -2634.508650 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97785 -38.48092 -36.07256 -34.04553 -33.70746 -30.27680 -29.16195 -27.55794 -25.98979 -24.69984 -22.85291 -21.74102 -21.01879 -20.51132 -20.17384 -18.04542 -16.94547 -16.71360 -16.37413 -15.91367 -15.55428 -14.99552 -14.71860 -14.40541 -14.24356 -13.97976 -13.76381 -13.29487 -13.12512 -12.81633 -12.75810 -12.56566 -12.41082 -12.34329 -12.07638 -11.95249 -11.60277 -11.50470 -11.47096 -11.30951 -11.08015 -10.85632 -10.30507 -10.13186 -9.88403 -8.92920 -8.01569 -6.08469 1.43486 1.45551 1.46898 1.52252 2.48932 3.28115 3.29593 3.62848 3.77447 3.79729 4.03799 4.13868 4.31604 4.41329 4.45306 4.55533 4.60173 4.66180 4.68967 4.73659 4.78557 4.81752 4.82915 4.99359 5.01944 5.06025 5.10696 5.14336 5.18324 5.23890 5.31794 5.35360 5.43708 5.58396 5.69143 5.75322 5.81650 5.89599 5.97178 6.43695 6.56316 6.81562 6.95015 7.56577 9.06643 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.004937 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.394341 B = 5670.118404 C = 6467.445130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.087 4.087 4 C -0.078 4.078 5 H 0.075 0.925 6 C -0.106 4.106 7 C -0.148 4.148 8 C 0.081 3.919 9 H 0.058 0.942 10 N -0.674 5.674 11 C 0.127 3.873 12 C 0.024 3.976 13 C -0.480 4.480 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.914 5.914 17 Si 0.945 3.055 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.274 1.274 21 C -0.189 4.189 22 C -0.162 4.162 23 C -0.106 4.106 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.338 0.662 34 H 0.034 0.966 35 H 0.007 0.993 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 -13.941 0.247 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.173 4.173 3 C -0.124 4.124 4 C -0.097 4.097 5 H 0.094 0.906 6 C -0.144 4.144 7 C -0.187 4.187 8 C -0.029 4.029 9 H 0.076 0.924 10 N -0.304 5.304 11 C -0.003 4.003 12 C 0.023 3.977 13 C -0.518 4.518 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.553 5.553 17 Si 0.771 3.229 18 H -0.213 1.213 19 H -0.202 1.202 20 H -0.199 1.199 21 C -0.226 4.226 22 C -0.200 4.200 23 C -0.145 4.145 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.991 -13.260 -0.196 17.879 hybrid contribution 0.439 0.427 -0.139 0.628 sum -11.552 -12.833 -0.335 17.270 Atomic orbital electron populations 1.23997 0.95980 1.02334 1.01538 1.23044 0.96163 0.98556 0.99555 1.20885 0.97772 0.95606 0.98150 1.21653 0.95485 0.94031 0.98498 0.90649 1.22312 0.93197 0.97762 1.01153 1.23159 0.98616 0.96040 1.00913 1.22472 0.94295 0.90109 0.96058 0.92406 1.60201 1.15102 1.50020 1.05029 1.21156 0.87940 0.93870 0.97305 1.18958 0.90729 0.94126 0.93898 1.20517 1.25079 0.96358 1.09823 0.93531 1.25579 0.95399 1.01088 0.95730 1.70116 1.31798 1.36783 1.16608 0.85830 0.79060 0.80660 0.77308 1.21325 1.20157 1.19935 1.22966 1.07473 0.99543 0.92586 1.22385 0.95937 0.99709 1.01979 1.22167 0.93586 0.96907 1.01795 0.88677 0.87486 0.86672 0.91770 0.91273 0.90443 0.91280 0.92342 0.91101 0.84334 0.94747 0.97470 0.93582 0.90805 0.89294 0.91275 0.92456 0.91921 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.16 -2.60 9.16 25.64 0.23 -2.37 16 3 C -0.09 -1.68 4.79 29.85 0.14 -1.53 16 4 C -0.08 -1.64 2.91 -10.07 -0.03 -1.67 16 5 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 6 C -0.11 -2.12 5.81 31.67 0.18 -1.94 16 7 C -0.15 -3.68 6.46 31.88 0.21 -3.47 16 8 C 0.08 2.55 3.19 45.99 0.15 2.69 16 9 H 0.06 2.01 7.74 -2.39 -0.02 1.99 16 10 N -0.67 -25.89 6.15 -486.03 -2.99 -28.87 16 11 C 0.13 5.65 5.43 86.30 0.47 6.12 16 12 C 0.02 1.16 1.63 -52.93 -0.09 1.07 16 13 C -0.48 -26.69 8.72 25.60 0.22 -26.46 16 14 H 0.05 2.63 7.82 -2.91 -0.02 2.60 16 15 C 0.02 1.16 5.43 84.65 0.46 1.62 16 16 N -0.91 -53.48 12.66 21.45 0.27 -53.21 16 17 Si 0.94 45.02 29.54 68.60 2.03 47.04 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 21 C -0.19 -8.04 9.96 30.62 0.30 -7.74 16 22 C -0.16 -7.77 9.16 30.62 0.28 -7.49 16 23 C -0.11 -2.94 6.19 31.32 0.19 -2.75 16 24 H 0.09 1.44 7.84 -2.91 -0.02 1.42 16 25 H 0.11 1.35 8.06 -2.91 -0.02 1.32 16 26 H 0.12 1.71 7.88 -2.91 -0.02 1.69 16 27 H 0.06 1.26 7.79 -2.39 -0.02 1.24 16 28 H 0.07 1.38 8.01 -2.39 -0.02 1.36 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.34 7.76 -2.39 -0.02 1.32 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.70 7.79 -2.39 -0.02 1.68 16 33 H 0.34 12.00 8.28 -89.70 -0.74 11.26 16 34 H 0.03 1.75 7.95 -2.39 -0.02 1.74 16 35 H 0.01 0.30 8.10 -2.39 -0.02 0.28 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.06 1.84 8.04 -2.38 -0.02 1.82 16 42 H 0.05 1.61 7.67 -2.39 -0.02 1.59 16 Total: -1.00 -59.72 338.85 3.22 -56.50 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.21 Total: 24.60 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 3.70 Total: -46.05 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -2.72 Total: -82.09 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -59.72 3.22 -56.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593621289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.992 kcal (2) G-P(sol) polarization free energy of solvation -59.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds