Wall clock time and date at job start Mon Mar 30 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00172 * 2 1 4 4 N 1.46907 * 109.47023 * 123.44574 * 3 2 1 5 5 C 1.46895 * 110.99769 * 168.63519 * 4 3 2 6 6 C 1.50700 * 109.46911 * 284.00647 * 5 4 3 7 7 H 1.07997 * 120.00282 * 4.44991 * 6 5 4 8 8 C 1.37882 * 119.99975 * 184.45029 * 6 5 4 9 9 N 1.31513 * 119.99991 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99944 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47101 * 60.00124 * 10 8 6 12 12 H 1.48501 * 109.46865 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46871 * 299.99986 * 10 8 6 14 14 C 1.46904 * 110.99811 * 292.58367 * 4 3 2 15 15 C 1.52997 * 109.46739 * 164.89316 * 14 4 3 16 16 H 1.08997 * 109.61536 * 55.14181 * 15 14 4 17 17 C 1.53299 * 109.61975 * 294.78140 * 15 14 4 18 18 C 1.52878 * 108.58045 * 165.82742 * 17 15 14 19 19 C 1.52712 * 110.15309 * 54.52499 * 18 17 15 20 20 H 1.09000 * 115.39194 * 128.78663 * 19 18 17 21 21 C 1.53661 * 116.03106 * 269.79575 * 19 18 17 22 22 C 1.52074 * 120.52297 * 338.52417 * 19 18 17 23 23 H 1.08996 * 115.92990 * 149.26280 * 22 19 18 24 24 C 1.52074 * 120.01840 * 5.29227 * 22 19 18 25 25 H 1.08003 * 119.99684 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00059 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99684 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47174 * 243.44260 * 3 2 1 29 29 H 1.08995 * 109.47079 * 3.44442 * 3 2 1 30 30 H 1.08997 * 109.47775 * 44.00991 * 5 4 3 31 31 H 1.09002 * 109.47141 * 164.00970 * 5 4 3 32 32 H 0.97003 * 120.00225 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47311 * 284.89624 * 14 4 3 34 34 H 1.09004 * 109.46868 * 44.90077 * 14 4 3 35 35 H 1.09000 * 109.61925 * 285.55657 * 17 15 14 36 36 H 1.08995 * 109.61785 * 45.92194 * 17 15 14 37 37 H 1.08997 * 109.35732 * 174.73294 * 18 17 15 38 38 H 1.09000 * 109.36286 * 294.31625 * 18 17 15 39 39 H 1.08993 * 117.53840 * 219.06645 * 21 19 18 40 40 H 1.08999 * 117.53393 * 4.30669 * 21 19 18 41 41 H 1.09002 * 109.27000 * 218.03272 * 24 22 19 42 42 H 1.08997 * 109.26686 * 98.56285 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9695 1.3474 1.1557 5 6 3.9093 2.4711 1.0469 6 6 4.9797 2.1350 0.0408 7 1 4.9241 1.2134 -0.5193 8 6 6.0302 3.0043 -0.1646 9 7 6.0982 4.1264 0.5179 10 14 7.3575 2.5873 -1.4112 11 1 6.7450 2.4407 -2.7560 12 1 8.3668 3.6761 -1.4425 13 1 8.0161 1.3134 -1.0256 14 6 2.2145 1.4125 2.4142 15 6 3.1430 1.0789 3.5836 16 1 4.0080 1.7418 3.5647 17 6 3.6083 -0.3776 3.4722 18 6 4.7888 -0.5858 4.4210 19 6 4.4062 -0.1628 5.8376 20 1 4.6093 -0.8983 6.6159 21 6 4.6804 1.3050 6.2003 22 6 3.2502 0.7973 6.0713 23 1 2.7046 0.6679 7.0060 24 6 2.3891 1.2501 4.9025 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 2.6431 1.3900 -0.9193 29 1 1.3569 2.1326 0.0617 30 1 3.3733 3.3631 0.7229 31 1 4.3686 2.6560 2.0180 32 1 6.8374 4.7377 0.3737 33 1 1.8120 2.4170 2.5450 34 1 1.3955 0.6938 2.3842 35 1 2.7926 -1.0447 3.7509 36 1 3.9174 -0.5856 2.4479 37 1 5.0701 -1.6388 4.4219 38 1 5.6349 0.0117 4.0816 39 1 5.0520 1.5153 7.2031 40 1 5.0568 1.9570 5.4120 41 1 2.1279 2.3002 5.0337 42 1 1.4771 0.6538 4.8755 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595499655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:53 Heat of formation + Delta-G solvation = 14.344088 kcal Electronic energy + Delta-G solvation = -18949.910949 eV Core-core repulsion = 16315.656041 eV Total energy + Delta-G solvation = -2634.254908 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.67563 -38.61679 -35.04347 -34.83328 -33.21720 -31.85708 -29.21651 -27.74138 -25.62817 -24.78039 -23.39710 -22.05421 -21.18682 -20.51714 -19.37867 -18.49557 -17.07624 -16.67787 -16.52437 -15.66341 -15.36441 -15.24205 -14.98730 -14.83024 -14.25372 -14.02761 -13.99201 -13.39422 -13.16852 -13.00780 -12.82625 -12.75291 -12.59328 -12.41129 -12.09206 -12.05251 -11.82283 -11.57220 -11.33595 -11.25041 -11.02474 -10.62684 -10.53124 -10.46090 -10.18713 -8.96969 -8.18480 -6.28098 1.39136 1.42383 1.45069 1.50233 2.40182 2.88546 3.12438 3.36534 3.76529 3.85777 3.93945 4.13298 4.15466 4.23844 4.26709 4.44986 4.51532 4.60859 4.64734 4.70609 4.75346 4.80429 4.87176 4.91502 5.00147 5.05373 5.08134 5.13594 5.22271 5.23302 5.28505 5.32205 5.38947 5.47611 5.64184 5.65958 5.70861 5.77677 5.91399 6.11551 6.43414 6.68539 6.87308 7.40951 8.91638 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.007902 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.994869 B = 3542.541418 C = 4800.652600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.085 3.915 4 N -0.530 5.530 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.066 3.934 15 C -0.079 4.079 16 H 0.036 0.964 17 C -0.095 4.095 18 C -0.090 4.090 19 C -0.141 4.141 20 H 0.120 0.880 21 C -0.200 4.200 22 C -0.129 4.129 23 H 0.120 0.880 24 C -0.080 4.080 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.019 0.981 30 H -0.048 1.048 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.007 0.993 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -9.745 8.352 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.160 4.160 3 C -0.043 4.043 4 N -0.253 5.253 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.063 4.063 15 C -0.098 4.098 16 H 0.055 0.945 17 C -0.132 4.132 18 C -0.128 4.128 19 C -0.159 4.159 20 H 0.138 0.862 21 C -0.237 4.237 22 C -0.147 4.147 23 H 0.138 0.862 24 C -0.118 4.118 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.038 0.962 30 H -0.030 1.030 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.273 -10.010 8.375 15.453 hybrid contribution 0.662 1.419 -0.754 1.738 sum -7.612 -8.591 7.621 13.778 Atomic orbital electron populations 1.23953 0.95013 1.02600 1.00712 1.22831 0.95939 0.97535 0.99728 1.21130 0.93700 0.94797 0.94641 1.62021 1.17057 1.45009 1.01252 1.19369 0.90261 0.86112 0.95815 1.21426 1.07477 1.05034 1.21591 0.92164 1.25878 1.00504 0.94815 0.98408 1.70083 1.32897 1.11567 1.43029 0.85509 0.78396 0.77854 0.79309 1.19263 1.20898 1.19395 1.22091 0.95980 0.98283 0.89897 1.21102 0.97348 0.97654 0.93680 0.94536 1.21366 0.97715 0.95013 0.99113 1.21028 0.97525 1.01185 0.93050 1.22297 1.03017 0.92638 0.97964 0.86222 1.23130 1.00381 0.97835 1.02325 1.21842 0.90155 1.02654 1.00095 0.86225 1.20858 0.98177 1.00935 0.91791 0.88842 0.86103 0.86936 0.91867 0.96238 1.02990 0.97210 0.92842 0.97474 0.89654 0.90961 0.92536 0.90419 0.94442 0.87578 0.91653 0.92458 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.48 14.30 67.78 0.97 -3.51 16 2 C -0.14 -4.30 8.53 25.64 0.22 -4.08 16 3 C 0.08 3.33 5.23 85.55 0.45 3.78 16 4 N -0.53 -23.09 3.65 -905.36 -3.31 -26.40 16 5 C 0.21 11.49 4.59 85.56 0.39 11.88 16 6 C -0.52 -29.91 8.60 25.60 0.22 -29.69 16 7 H 0.06 3.43 7.69 -2.91 -0.02 3.40 16 8 C 0.00 0.10 5.46 84.66 0.46 0.56 16 9 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 10 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 C 0.07 2.40 4.23 86.30 0.36 2.77 16 15 C -0.08 -2.73 1.93 -10.74 -0.02 -2.75 16 16 H 0.04 1.58 5.36 -2.39 -0.01 1.57 16 17 C -0.09 -3.01 5.24 30.65 0.16 -2.85 16 18 C -0.09 -2.67 5.83 30.46 0.18 -2.49 16 19 C -0.14 -3.53 6.19 -10.97 -0.07 -3.60 16 20 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 21 C -0.20 -5.44 9.66 30.59 0.30 -5.14 16 22 C -0.13 -3.15 6.00 -11.63 -0.07 -3.22 16 23 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 24 C -0.08 -2.17 5.22 30.25 0.16 -2.01 16 25 H 0.09 2.22 7.84 -2.91 -0.02 2.20 16 26 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.11 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.06 2.76 7.34 -2.38 -0.02 2.74 16 29 H 0.02 0.76 7.75 -2.39 -0.02 0.74 16 30 H -0.05 -2.84 8.00 -2.39 -0.02 -2.86 16 31 H 0.01 0.58 6.14 -2.39 -0.01 0.57 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.01 0.27 8.06 -2.39 -0.02 0.25 16 34 H 0.09 2.71 6.96 -2.38 -0.02 2.69 16 35 H 0.07 1.96 8.04 -2.39 -0.02 1.94 16 36 H 0.06 2.10 7.46 -2.39 -0.02 2.09 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.31 8.06 -2.39 -0.02 1.30 16 39 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.06 2.22 7.27 -2.39 -0.02 2.21 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.06 328.06 3.66 -60.40 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.95 Total: 16.27 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 3.71 Total: -40.37 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.02 Total: -83.59 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.06 3.66 -60.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.747 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds