Wall clock time and date at job start Mon Mar 30 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50703 * 119.99834 * 2 1 4 4 N 1.46896 * 109.47032 * 124.37240 * 3 2 1 5 5 C 1.46905 * 111.00306 * 300.79977 * 4 3 2 6 6 C 1.50702 * 109.46623 * 288.45410 * 5 4 3 7 7 H 1.08000 * 120.00251 * 4.65972 * 6 5 4 8 8 C 1.37876 * 119.99763 * 184.66665 * 6 5 4 9 9 N 1.31514 * 120.00217 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99947 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47358 * 89.99793 * 10 8 6 12 12 H 1.48500 * 109.47265 * 209.99854 * 10 8 6 13 13 H 1.48505 * 109.47015 * 329.99680 * 10 8 6 14 14 C 1.46901 * 111.00131 * 64.74964 * 4 3 2 15 15 C 1.52999 * 109.47016 * 74.40983 * 14 4 3 16 16 H 1.08999 * 109.76523 * 305.35326 * 15 14 4 17 17 C 1.53303 * 109.62014 * 184.90018 * 15 14 4 18 18 C 1.52866 * 108.59089 * 165.82484 * 17 15 14 19 19 C 1.52074 * 110.51276 * 54.89270 * 18 17 15 20 20 H 1.09002 * 114.63580 * 193.15238 * 19 18 17 21 21 C 1.52304 * 119.84162 * 49.54743 * 19 18 17 22 22 C 1.52070 * 120.02138 * 338.29658 * 19 18 17 23 23 H 1.09003 * 117.25294 * 215.56672 * 22 19 18 24 24 C 1.52712 * 120.51892 * 5.28877 * 22 19 18 25 25 H 1.08000 * 119.99794 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99639 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00250 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46838 * 4.37202 * 3 2 1 29 29 H 1.08998 * 109.47003 * 244.37034 * 3 2 1 30 30 H 1.08999 * 109.47121 * 48.45022 * 5 4 3 31 31 H 1.08998 * 109.47489 * 168.45742 * 5 4 3 32 32 H 0.97005 * 120.00005 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47341 * 314.40840 * 14 4 3 34 34 H 1.09003 * 109.47374 * 194.41168 * 14 4 3 35 35 H 1.09001 * 109.61493 * 285.55979 * 17 15 14 36 36 H 1.09005 * 109.61646 * 45.91241 * 17 15 14 37 37 H 1.09000 * 109.26965 * 175.15392 * 18 17 15 38 38 H 1.08999 * 109.27420 * 294.65829 * 18 17 15 39 39 H 1.08997 * 117.53690 * 142.80067 * 21 19 18 40 40 H 1.08997 * 117.53529 * 357.56399 * 21 19 18 41 41 H 1.09006 * 109.35506 * 98.73979 * 24 22 19 42 42 H 1.09001 * 109.35630 * 218.45693 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9855 1.3383 1.1431 5 6 2.2573 1.1968 2.4111 6 6 1.4842 2.4600 2.6899 7 1 1.4684 3.2557 1.9598 8 6 0.7970 2.5998 3.8770 9 7 0.8159 1.6307 4.7659 10 14 -0.1608 4.1659 4.2229 11 1 -1.5512 4.0164 3.7231 12 1 -0.1852 4.4183 5.6861 13 1 0.4926 5.3080 3.5344 14 6 4.0222 0.3055 1.0135 15 6 5.0377 0.7328 -0.0482 16 1 4.5226 0.9543 -0.9829 17 6 6.0516 -0.3947 -0.2739 18 6 6.8249 -0.1044 -1.5602 19 6 7.4574 1.2773 -1.5015 20 1 7.8315 1.6467 -2.4563 21 6 8.2715 1.6868 -0.2812 22 6 6.9022 2.3285 -0.5532 23 1 6.9135 3.3638 -0.8938 24 6 5.7891 1.9749 0.4307 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3578 2.1321 0.0783 29 1 2.6302 1.3975 -0.9265 30 1 1.5670 0.3561 2.3419 31 1 2.9665 1.0191 3.2196 32 1 0.3321 1.7290 5.6009 33 1 3.5613 -0.6368 0.7171 34 1 4.5288 0.1771 1.9700 35 1 6.7435 -0.4384 0.5672 36 1 5.5269 -1.3457 -0.3658 37 1 7.6071 -0.8530 -1.6864 38 1 6.1422 -0.1512 -2.4087 39 1 9.1574 2.2993 -0.4488 40 1 8.3400 0.9746 0.5411 41 1 6.2226 1.7792 1.4116 42 1 5.0927 2.8103 0.5037 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595499656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:00 Heat of formation + Delta-G solvation = 29.928154 kcal Electronic energy + Delta-G solvation = -18784.324973 eV Core-core repulsion = 16150.745841 eV Total energy + Delta-G solvation = -2633.579132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58716 -37.27523 -33.61744 -32.77005 -31.67971 -30.48480 -27.27943 -26.14883 -24.59247 -23.51110 -21.19424 -20.97688 -20.60436 -18.61648 -18.23635 -16.23467 -16.02423 -15.19050 -14.79277 -14.28117 -14.10731 -13.83613 -13.73378 -13.20437 -13.03263 -12.63537 -12.14876 -12.03229 -11.90628 -11.26227 -11.22267 -11.06306 -10.91275 -10.79225 -10.67239 -10.46276 -10.39780 -10.33874 -10.11860 -9.78109 -9.52996 -9.41412 -9.10057 -8.69224 -8.35764 -7.13345 -5.96403 -3.96474 2.91508 3.34502 3.40835 3.45075 3.85455 4.46781 4.70208 4.89772 4.94054 5.01647 5.15272 5.35610 5.39341 5.43049 5.53078 5.57008 5.69576 5.74709 5.82732 5.84772 5.85951 6.02836 6.08028 6.17160 6.19972 6.23158 6.33847 6.37199 6.40646 6.45379 6.55700 6.73218 6.82932 6.83023 7.19143 7.33647 7.38097 7.48253 7.87361 8.17362 8.29836 8.62805 9.10428 9.66762 11.14422 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.005649 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.398381 B = 4955.214584 C = 5570.219891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.178 4.178 3 C 0.089 3.911 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.055 3.945 15 C -0.076 4.076 16 H 0.069 0.931 17 C -0.118 4.118 18 C -0.084 4.084 19 C -0.142 4.142 20 H 0.091 0.909 21 C -0.190 4.190 22 C -0.140 4.140 23 H 0.096 0.904 24 C -0.074 4.074 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.061 0.939 30 H -0.003 1.003 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 -3.144 -11.739 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.198 4.198 3 C -0.039 4.039 4 N -0.248 5.248 5 C 0.066 3.934 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.073 4.073 15 C -0.095 4.095 16 H 0.087 0.913 17 C -0.156 4.156 18 C -0.122 4.122 19 C -0.161 4.161 20 H 0.109 0.891 21 C -0.227 4.227 22 C -0.158 4.158 23 H 0.114 0.886 24 C -0.112 4.112 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.014 0.986 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.201 -2.703 -11.525 15.626 hybrid contribution -0.920 -0.065 0.403 1.006 sum 9.281 -2.767 -11.122 14.748 Atomic orbital electron populations 1.23685 0.96066 1.01046 1.01294 1.23572 0.96662 0.99976 0.99576 1.21265 0.94630 0.94106 0.93904 1.62370 1.13309 1.45316 1.03795 1.19772 0.92472 0.96560 0.84612 1.21131 1.28697 1.01756 1.02139 0.92127 1.24956 0.96940 0.96508 0.96189 1.69959 1.43160 1.32364 1.08531 0.86566 0.80196 0.83773 0.77277 1.20863 1.21366 1.19835 1.22160 0.93566 0.93301 0.98323 1.21134 0.94862 0.94531 0.98980 0.91287 1.21659 0.98016 0.98577 0.97352 1.20799 0.98684 0.94348 0.98334 1.21780 1.03303 0.96407 0.94577 0.89096 1.23115 0.95036 1.04269 1.00282 1.22360 0.95089 0.97066 1.01303 0.88598 1.20966 0.95186 0.98824 0.96196 0.89797 0.88528 0.88685 0.90103 0.92063 0.98564 0.95450 0.93091 0.95560 0.91757 0.92085 0.92101 0.92149 0.91763 0.89607 0.88915 0.92114 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 14.32 29.01 0.42 -2.82 16 2 C -0.18 -3.24 7.41 -36.03 -0.27 -3.50 16 3 C 0.09 1.69 5.54 -4.98 -0.03 1.66 16 4 N -0.53 -10.97 4.19 -237.51 -1.00 -11.96 16 5 C 0.19 4.92 4.58 -4.97 -0.02 4.89 16 6 C -0.50 -13.92 8.67 -34.44 -0.30 -14.22 16 7 H 0.06 1.68 7.32 -52.49 -0.38 1.30 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.06 0.97 4.24 -3.82 -0.02 0.96 16 15 C -0.08 -1.11 2.20 -90.53 -0.20 -1.31 16 16 H 0.07 1.03 6.55 -51.93 -0.34 0.69 16 17 C -0.12 -1.45 5.04 -26.64 -0.13 -1.59 16 18 C -0.08 -0.92 5.93 -27.27 -0.16 -1.08 16 19 C -0.14 -1.60 6.00 -91.92 -0.55 -2.15 16 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.19 -2.14 9.66 -26.75 -0.26 -2.40 16 22 C -0.14 -1.76 6.19 -90.91 -0.56 -2.33 16 23 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 24 C -0.07 -1.10 4.96 -26.95 -0.13 -1.24 16 25 H 0.08 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.10 1.74 7.84 -52.49 -0.41 1.33 16 27 H 0.10 1.64 6.71 -52.49 -0.35 1.29 16 28 H 0.08 1.67 6.82 -51.93 -0.35 1.31 16 29 H 0.06 1.03 6.60 -51.93 -0.34 0.69 16 30 H 0.00 -0.09 6.69 -51.93 -0.35 -0.44 16 31 H 0.03 0.77 7.71 -51.93 -0.40 0.37 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.03 0.46 6.09 -51.93 -0.32 0.14 16 34 H 0.06 1.20 7.68 -51.93 -0.40 0.80 16 35 H 0.06 0.76 7.11 -51.93 -0.37 0.39 16 36 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.07 7.26 -51.93 -0.38 0.69 16 41 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 42 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -28.86 324.02 -10.03 -38.88 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.31 Total: 1.26 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.32 Total: -23.66 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.26 Total: -38.14 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.86 -10.03 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.812 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds