Wall clock time and date at job start Mon Mar 30 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50703 * 119.99834 * 2 1 4 4 N 1.46896 * 109.47032 * 124.37240 * 3 2 1 5 5 C 1.46905 * 111.00306 * 300.79977 * 4 3 2 6 6 C 1.50702 * 109.46623 * 288.45410 * 5 4 3 7 7 H 1.08000 * 120.00251 * 4.65972 * 6 5 4 8 8 C 1.37876 * 119.99763 * 184.66665 * 6 5 4 9 9 N 1.31514 * 120.00217 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99947 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47358 * 89.99793 * 10 8 6 12 12 H 1.48500 * 109.47265 * 209.99854 * 10 8 6 13 13 H 1.48505 * 109.47015 * 329.99680 * 10 8 6 14 14 C 1.46901 * 111.00131 * 64.74964 * 4 3 2 15 15 C 1.52999 * 109.47016 * 74.40983 * 14 4 3 16 16 H 1.08999 * 109.76523 * 305.35326 * 15 14 4 17 17 C 1.53303 * 109.62014 * 184.90018 * 15 14 4 18 18 C 1.52866 * 108.59089 * 165.82484 * 17 15 14 19 19 C 1.52074 * 110.51276 * 54.89270 * 18 17 15 20 20 H 1.09002 * 114.63580 * 193.15238 * 19 18 17 21 21 C 1.52304 * 119.84162 * 49.54743 * 19 18 17 22 22 C 1.52070 * 120.02138 * 338.29658 * 19 18 17 23 23 H 1.09003 * 117.25294 * 215.56672 * 22 19 18 24 24 C 1.52712 * 120.51892 * 5.28877 * 22 19 18 25 25 H 1.08000 * 119.99794 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99639 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00250 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46838 * 4.37202 * 3 2 1 29 29 H 1.08998 * 109.47003 * 244.37034 * 3 2 1 30 30 H 1.08999 * 109.47121 * 48.45022 * 5 4 3 31 31 H 1.08998 * 109.47489 * 168.45742 * 5 4 3 32 32 H 0.97005 * 120.00005 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47341 * 314.40840 * 14 4 3 34 34 H 1.09003 * 109.47374 * 194.41168 * 14 4 3 35 35 H 1.09001 * 109.61493 * 285.55979 * 17 15 14 36 36 H 1.09005 * 109.61646 * 45.91241 * 17 15 14 37 37 H 1.09000 * 109.26965 * 175.15392 * 18 17 15 38 38 H 1.08999 * 109.27420 * 294.65829 * 18 17 15 39 39 H 1.08997 * 117.53690 * 142.80067 * 21 19 18 40 40 H 1.08997 * 117.53529 * 357.56399 * 21 19 18 41 41 H 1.09006 * 109.35506 * 98.73979 * 24 22 19 42 42 H 1.09001 * 109.35630 * 218.45693 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9855 1.3383 1.1431 5 6 2.2573 1.1968 2.4111 6 6 1.4842 2.4600 2.6899 7 1 1.4684 3.2557 1.9598 8 6 0.7970 2.5998 3.8770 9 7 0.8159 1.6307 4.7659 10 14 -0.1608 4.1659 4.2229 11 1 -1.5512 4.0164 3.7231 12 1 -0.1852 4.4183 5.6861 13 1 0.4926 5.3080 3.5344 14 6 4.0222 0.3055 1.0135 15 6 5.0377 0.7328 -0.0482 16 1 4.5226 0.9543 -0.9829 17 6 6.0516 -0.3947 -0.2739 18 6 6.8249 -0.1044 -1.5602 19 6 7.4574 1.2773 -1.5015 20 1 7.8315 1.6467 -2.4563 21 6 8.2715 1.6868 -0.2812 22 6 6.9022 2.3285 -0.5532 23 1 6.9135 3.3638 -0.8938 24 6 5.7891 1.9749 0.4307 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3578 2.1321 0.0783 29 1 2.6302 1.3975 -0.9265 30 1 1.5670 0.3561 2.3419 31 1 2.9665 1.0191 3.2196 32 1 0.3321 1.7290 5.6009 33 1 3.5613 -0.6368 0.7171 34 1 4.5288 0.1771 1.9700 35 1 6.7435 -0.4384 0.5672 36 1 5.5269 -1.3457 -0.3658 37 1 7.6071 -0.8530 -1.6864 38 1 6.1422 -0.1512 -2.4087 39 1 9.1574 2.2993 -0.4488 40 1 8.3400 0.9746 0.5411 41 1 6.2226 1.7792 1.4116 42 1 5.0927 2.8103 0.5037 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595499656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:59 Heat of formation + Delta-G solvation = 15.107211 kcal Electronic energy + Delta-G solvation = -18784.967658 eV Core-core repulsion = 16150.745841 eV Total energy + Delta-G solvation = -2634.221817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = -0.73 seconds Orbital eigenvalues (eV) -40.67588 -38.80845 -35.00493 -34.67533 -33.14535 -31.65391 -29.20328 -27.58595 -26.06267 -24.89144 -22.79827 -22.06825 -21.89110 -20.09924 -19.29656 -18.32878 -17.07434 -16.86986 -16.37886 -16.07913 -15.52593 -15.10980 -14.69279 -14.54684 -14.41858 -14.06517 -13.98316 -13.18316 -13.13431 -13.02660 -12.79478 -12.65391 -12.35575 -12.23087 -12.12510 -12.10516 -11.93790 -11.64441 -11.55620 -11.31317 -10.97703 -10.58377 -10.51006 -10.39120 -10.15548 -8.85931 -8.15482 -6.23973 1.40560 1.41809 1.46327 1.53217 2.42253 2.93343 3.16571 3.41098 3.76560 3.92220 3.97598 4.08896 4.17440 4.25710 4.27427 4.37802 4.43202 4.51251 4.66858 4.75300 4.84285 4.87462 4.92297 4.98851 4.99043 5.03509 5.14370 5.15916 5.25806 5.28779 5.34945 5.39279 5.43807 5.48925 5.60184 5.61943 5.70419 5.74386 5.92466 6.13873 6.47131 6.72163 6.91874 7.44661 8.95048 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.005649 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.398381 B = 4955.214584 C = 5570.219891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.188 4.188 3 C 0.092 3.908 4 N -0.531 5.531 5 C 0.209 3.791 6 C -0.512 4.512 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.936 5.936 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.057 3.943 15 C -0.066 4.066 16 H 0.071 0.929 17 C -0.114 4.114 18 C -0.083 4.083 19 C -0.133 4.133 20 H 0.108 0.892 21 C -0.185 4.185 22 C -0.157 4.157 23 H 0.099 0.901 24 C -0.070 4.070 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.087 0.913 30 H -0.026 1.026 31 H -0.006 1.006 32 H 0.262 0.738 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 -3.088 -13.480 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.208 4.208 3 C -0.036 4.036 4 N -0.254 5.254 5 C 0.083 3.917 6 C -0.550 4.550 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.577 5.577 10 Si 0.788 3.212 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.191 1.191 14 C -0.071 4.071 15 C -0.085 4.085 16 H 0.089 0.911 17 C -0.152 4.152 18 C -0.120 4.120 19 C -0.151 4.151 20 H 0.126 0.874 21 C -0.221 4.221 22 C -0.175 4.175 23 H 0.118 0.882 24 C -0.108 4.108 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.105 0.895 30 H -0.008 1.008 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.879 -2.648 -13.291 17.379 hybrid contribution -1.113 -0.109 0.947 1.466 sum 9.766 -2.757 -12.344 15.979 Atomic orbital electron populations 1.23855 0.96099 1.01757 1.00385 1.23590 0.96954 0.99859 1.00360 1.21236 0.94387 0.94028 0.93938 1.62271 1.13646 1.46912 1.02521 1.19370 0.91251 0.95001 0.86094 1.21425 1.28947 1.02345 1.02282 0.92350 1.25826 0.97909 0.99829 0.95957 1.70086 1.44124 1.34453 1.09021 0.85487 0.78894 0.79703 0.77164 1.19898 1.20951 1.19075 1.22219 0.93244 0.92868 0.98756 1.21037 0.94523 0.95388 0.97509 0.91057 1.21622 0.97452 0.97739 0.98386 1.20824 0.99153 0.94611 0.97396 1.21902 1.02217 0.95921 0.95052 0.87383 1.23162 0.94683 1.03937 1.00355 1.22253 0.95161 0.97939 1.02197 0.88247 1.20835 0.95516 0.97940 0.96468 0.87749 0.89231 0.87562 0.92118 0.89467 1.00806 0.98793 0.92935 0.94914 0.93507 0.92382 0.91345 0.90285 0.90912 0.88114 0.89383 0.93604 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.36 14.32 67.77 0.97 -5.39 16 2 C -0.19 -6.73 7.41 25.64 0.19 -6.54 16 3 C 0.09 3.48 5.54 85.56 0.47 3.95 16 4 N -0.53 -22.70 4.19 -905.35 -3.80 -26.49 16 5 C 0.21 11.19 4.58 85.56 0.39 11.58 16 6 C -0.51 -29.23 8.67 25.60 0.22 -29.01 16 7 H 0.06 3.29 7.32 -2.91 -0.02 3.27 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 10 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 14 C 0.06 2.05 4.24 86.30 0.37 2.41 16 15 C -0.07 -1.87 2.20 -10.74 -0.02 -1.89 16 16 H 0.07 2.01 6.55 -2.39 -0.02 2.00 16 17 C -0.11 -2.59 5.04 30.65 0.15 -2.44 16 18 C -0.08 -1.53 5.93 30.24 0.18 -1.35 16 19 C -0.13 -2.59 6.00 -11.64 -0.07 -2.66 16 20 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.18 -3.77 9.66 30.58 0.30 -3.47 16 22 C -0.16 -3.76 6.19 -10.98 -0.07 -3.82 16 23 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.07 -2.09 4.96 30.46 0.15 -1.94 16 25 H 0.10 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.09 3.21 7.84 -2.91 -0.02 3.19 16 27 H 0.11 3.55 6.71 -2.91 -0.02 3.53 16 28 H 0.06 2.53 6.82 -2.39 -0.02 2.51 16 29 H 0.09 2.83 6.60 -2.39 -0.02 2.81 16 30 H -0.03 -1.47 6.69 -2.39 -0.02 -1.49 16 31 H -0.01 -0.36 7.71 -2.39 -0.02 -0.38 16 32 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 33 H 0.03 1.13 6.09 -2.39 -0.01 1.11 16 34 H 0.05 1.81 7.68 -2.39 -0.02 1.80 16 35 H 0.06 1.36 7.11 -2.39 -0.02 1.34 16 36 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 1.89 7.26 -2.39 -0.02 1.87 16 41 H 0.05 1.47 8.06 -2.38 -0.02 1.45 16 42 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 Total: -1.00 -62.65 324.02 3.17 -59.48 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.96 Total: 16.77 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.70 Total: -39.98 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.51 Total: -83.31 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -62.65 3.17 -59.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.583 kcal (2) G-P(sol) polarization free energy of solvation -62.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.72 seconds