Wall clock time and date at job start Mon Mar 30 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29439 * 117.96594 * 2 1 4 4 C 1.50066 * 124.07554 * 180.42089 * 3 2 1 5 5 H 1.09004 * 109.35645 * 103.10471 * 4 3 2 6 6 C 1.53002 * 109.35813 * 222.81742 * 4 3 2 7 7 C 1.52939 * 110.30572 * 343.05509 * 4 3 2 8 8 C 1.53395 * 108.48197 * 49.07291 * 7 4 3 9 9 H 1.09002 * 109.64409 * 52.68894 * 8 7 4 10 10 C 1.53007 * 109.63965 * 173.10092 * 8 7 4 11 11 N 1.46902 * 109.46666 * 184.57830 * 10 8 7 12 12 C 1.47486 * 110.99695 * 170.00221 * 11 10 8 13 13 C 1.53506 * 87.93221 * 138.70374 * 12 11 10 14 14 C 1.50703 * 114.17236 * 220.32975 * 13 12 11 15 15 H 1.08001 * 119.99749 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00007 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99864 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47363 * 90.00159 * 18 16 14 20 20 H 1.48508 * 109.47046 * 210.00111 * 18 16 14 21 21 H 1.48503 * 109.46953 * 329.99491 * 18 16 14 22 22 C 1.47474 * 111.00271 * 265.97157 * 11 10 8 23 23 C 1.50075 * 117.95953 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47217 * 270.02126 * 1 2 3 25 25 H 1.09003 * 109.46865 * 30.01974 * 1 2 3 26 26 H 1.09002 * 109.47457 * 150.02099 * 1 2 3 27 27 H 1.07998 * 117.96276 * 0.44191 * 3 2 1 28 28 H 1.09000 * 109.46950 * 60.00323 * 6 4 3 29 29 H 1.08996 * 109.47123 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47225 * 300.00214 * 6 4 3 31 31 H 1.09001 * 109.43686 * 289.48316 * 7 4 3 32 32 H 1.09007 * 109.80439 * 168.87937 * 7 4 3 33 33 H 1.08998 * 109.46592 * 64.58413 * 10 8 7 34 34 H 1.08997 * 109.47468 * 304.58392 * 10 8 7 35 35 H 1.09000 * 113.47378 * 253.47583 * 12 11 10 36 36 H 1.08999 * 113.47621 * 23.93774 * 12 11 10 37 37 H 1.09007 * 114.17026 * 87.61940 * 13 12 11 38 38 H 0.97000 * 120.00231 * 180.02562 * 17 16 14 39 39 H 1.09008 * 113.47654 * 336.07031 * 22 11 10 40 40 H 1.09003 * 113.47610 * 106.47225 * 22 11 10 41 41 H 1.08996 * 109.35959 * 42.68319 * 23 2 1 42 42 H 1.09001 * 109.24348 * 283.02743 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 3.6061 1.3030 -0.0091 5 1 3.9340 1.5767 -1.0120 6 6 4.0040 2.4064 0.9732 7 6 4.2825 -0.0062 0.4000 8 6 3.6704 -1.1475 -0.4221 9 1 3.7174 -0.9010 -1.4829 10 6 4.4433 -2.4418 -0.1603 11 7 3.9249 -3.5060 -1.0303 12 6 4.7925 -4.6977 -0.9817 13 6 3.5193 -5.5550 -0.9579 14 6 3.5879 -6.7358 -0.0240 15 1 4.4817 -6.9151 0.5551 16 6 2.5095 -7.5873 0.0910 17 7 1.4214 -7.3693 -0.6146 18 14 2.5943 -9.0505 1.2491 19 1 2.1034 -8.6484 2.5916 20 1 1.7466 -10.1496 0.7209 21 1 4.0001 -9.5170 1.3552 22 6 2.8920 -4.2987 -0.3377 23 6 2.2106 -1.3256 0.0006 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.5090 2.0378 0.0074 28 1 3.6726 2.1369 1.9760 29 1 5.0876 2.5243 0.9677 30 1 3.5353 3.3444 0.6754 31 1 4.1116 -0.1866 1.4613 32 1 5.3530 0.0539 0.2032 33 1 4.3208 -2.7333 0.8828 34 1 5.5007 -2.2827 -0.3714 35 1 5.3919 -4.8353 -1.8816 36 1 5.3813 -4.7693 -0.0673 37 1 3.1319 -5.8063 -1.9453 38 1 0.6626 -7.9681 -0.5335 39 1 2.9736 -4.2637 0.7488 40 1 1.8807 -4.0974 -0.6910 41 1 1.7123 -1.9995 -0.6963 42 1 2.1741 -1.7512 1.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:37 Heat of formation + Delta-G solvation = 19.741095 kcal Electronic energy + Delta-G solvation = -18554.962318 eV Core-core repulsion = 15920.941441 eV Total energy + Delta-G solvation = -2634.020876 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -39.57519 -38.26520 -33.51957 -33.32982 -32.23052 -28.57996 -26.77611 -26.52912 -25.42283 -24.59816 -22.60755 -21.06721 -20.06260 -18.61367 -17.45456 -16.54793 -15.57598 -14.98512 -14.59409 -14.48829 -14.09502 -13.77210 -13.57693 -13.48865 -12.89086 -12.45555 -12.35330 -12.24741 -11.90491 -11.71017 -11.63678 -11.40855 -11.29410 -10.99411 -10.98523 -10.68790 -10.44413 -10.35231 -10.21325 -9.88260 -9.51950 -9.12016 -8.89825 -8.58976 -8.41398 -7.92680 -6.04168 -4.08346 2.38233 3.28969 3.36141 3.39159 4.40754 4.65716 4.81383 4.82737 5.14319 5.22705 5.24503 5.28772 5.38304 5.50777 5.60728 5.65219 5.66869 5.74878 5.83697 5.90550 5.91280 6.00039 6.06272 6.09402 6.10955 6.22782 6.26271 6.28542 6.40406 6.49094 6.53167 6.69712 6.72177 6.83655 6.84256 7.14428 7.20691 7.25967 7.74622 7.93741 8.14806 8.39867 8.94669 9.56411 11.05438 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.004781 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.386345 B = 5855.302339 C = 6306.994393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C -0.169 4.169 4 C -0.057 4.057 5 H 0.074 0.926 6 C -0.141 4.141 7 C -0.110 4.110 8 C -0.074 4.074 9 H 0.075 0.925 10 C 0.026 3.974 11 N -0.484 5.484 12 C -0.006 4.006 13 C 0.039 3.961 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.009 3.991 23 C -0.078 4.078 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 16.152 2.206 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.111 4.111 3 C -0.187 4.187 4 C -0.075 4.075 5 H 0.092 0.908 6 C -0.198 4.198 7 C -0.148 4.148 8 C -0.093 4.093 9 H 0.093 0.907 10 C -0.103 4.103 11 N -0.206 5.206 12 C -0.135 4.135 13 C 0.020 3.980 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.832 16.450 1.541 16.623 hybrid contribution 0.082 -0.993 1.559 1.850 sum 1.913 15.458 3.100 15.881 Atomic orbital electron populations 1.20971 0.92917 1.02294 1.01799 1.21053 0.95583 0.95390 0.99097 1.21799 0.95520 0.96833 1.04574 1.19925 0.92843 0.95413 0.99289 0.90804 1.21786 1.00857 0.97875 0.99323 1.21707 0.99131 0.93921 1.00029 1.21090 0.94314 0.93776 1.00073 0.90665 1.22661 0.98127 0.93501 0.96016 1.68816 1.08247 1.04262 1.39274 1.23977 0.98244 0.92036 0.99223 1.20115 0.89367 0.91019 0.97498 1.21047 1.00370 1.09877 1.24128 0.92519 1.25005 0.95506 0.97450 0.95588 1.69967 1.04283 1.37925 1.40202 0.86637 0.78081 0.82474 0.81072 1.20680 1.21142 1.19836 1.24082 0.95831 0.95726 0.96379 1.20521 0.94945 0.94062 1.01999 0.91855 0.92365 0.91622 0.88512 0.92748 0.92755 0.92951 0.92046 0.91958 0.94362 0.92179 0.92179 0.93018 0.91873 0.92904 0.93092 0.91945 0.89947 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.87 36.00 0.36 -1.10 16 2 C -0.11 -1.49 5.84 -100.94 -0.59 -2.08 16 3 C -0.17 -2.06 8.61 -35.90 -0.31 -2.37 16 4 C -0.06 -0.64 2.96 -92.11 -0.27 -0.91 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.14 -1.33 9.13 37.16 0.34 -0.99 16 7 C -0.11 -1.36 4.61 -26.56 -0.12 -1.48 16 8 C -0.07 -1.09 2.44 -90.40 -0.22 -1.31 16 9 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 10 C 0.03 0.44 4.39 -3.82 -0.02 0.42 16 11 N -0.48 -9.78 6.21 -244.64 -1.52 -11.30 16 12 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 13 C 0.04 0.98 3.77 -91.24 -0.34 0.64 16 14 C -0.52 -14.11 8.82 -34.44 -0.30 -14.41 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 17 N -0.89 -25.58 13.26 55.43 0.74 -24.84 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.01 0.20 5.84 -7.55 -0.04 0.15 16 23 C -0.08 -1.20 4.13 -28.17 -0.12 -1.32 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 26 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 27 H 0.10 1.06 7.81 -52.49 -0.41 0.65 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.67 7.26 -51.93 -0.38 0.29 16 34 H 0.06 0.95 8.08 -51.93 -0.42 0.54 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.08 7.87 -51.93 -0.41 0.68 16 37 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.05 1.18 7.37 -51.92 -0.38 0.80 16 40 H 0.06 1.47 7.37 -51.93 -0.38 1.09 16 41 H 0.08 1.42 6.69 -51.93 -0.35 1.07 16 42 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -27.72 327.35 -10.41 -38.13 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.74 Total: 0.21 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.80 Total: -23.19 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.78 Total: -36.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.72 -10.41 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.873 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds