Wall clock time and date at job start Mon Mar 30 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29444 * 117.96571 * 2 1 4 4 C 1.50061 * 124.07636 * 179.47992 * 3 2 1 5 5 H 1.08995 * 109.36000 * 256.94680 * 4 3 2 6 6 C 1.53006 * 109.35790 * 137.36116 * 4 3 2 7 7 C 1.52976 * 110.28888 * 17.02287 * 4 3 2 8 8 C 1.53397 * 108.45706 * 310.86295 * 7 4 3 9 9 H 1.09001 * 109.63958 * 307.33960 * 8 7 4 10 10 C 1.53000 * 109.63862 * 186.92879 * 8 7 4 11 11 N 1.46899 * 109.47002 * 175.42307 * 10 8 7 12 12 C 1.47958 * 111.00325 * 189.99762 * 11 10 8 13 13 C 1.53934 * 86.18385 * 222.41396 * 12 11 10 14 14 C 1.50696 * 113.73622 * 138.07414 * 13 12 11 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 C 1.47953 * 111.00547 * 90.63378 * 11 10 8 23 23 C 1.50070 * 117.95917 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47576 * 270.02288 * 1 2 3 25 25 H 1.09011 * 109.46710 * 30.02826 * 1 2 3 26 26 H 1.09007 * 109.46942 * 150.01705 * 1 2 3 27 27 H 1.08000 * 117.95645 * 359.49980 * 3 2 1 28 28 H 1.08997 * 109.46729 * 59.99868 * 6 4 3 29 29 H 1.08997 * 109.46930 * 180.02562 * 6 4 3 30 30 H 1.09006 * 109.46918 * 300.00010 * 6 4 3 31 31 H 1.08999 * 109.78978 * 191.07630 * 7 4 3 32 32 H 1.09000 * 109.47434 * 70.45859 * 7 4 3 33 33 H 1.08995 * 109.47693 * 55.41545 * 10 8 7 34 34 H 1.09000 * 109.46996 * 295.41554 * 10 8 7 35 35 H 1.09001 * 113.76183 * 108.09699 * 12 11 10 36 36 H 1.09001 * 113.85603 * 336.74216 * 12 11 10 37 37 H 1.09002 * 113.73234 * 269.25886 * 13 12 11 38 38 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 39 39 H 1.09005 * 113.75690 * 23.27020 * 22 11 10 40 40 H 1.09003 * 113.76399 * 251.90731 * 22 11 10 41 41 H 1.09004 * 109.35803 * 76.95416 * 23 2 1 42 42 H 1.08997 * 109.36593 * 317.36753 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3030 0.0113 5 1 3.9325 1.5767 1.0145 6 6 4.0051 2.4088 -0.9681 7 6 4.2828 -0.0064 -0.3978 8 6 3.6701 -1.1473 0.4244 9 1 3.7163 -0.9003 1.4851 10 6 4.4432 -2.4417 0.1638 11 7 3.9242 -3.5055 1.0338 12 6 4.7945 -4.7011 0.9864 13 6 3.4923 -5.5202 0.9334 14 6 3.5362 -6.6669 -0.0434 15 1 4.4285 -6.8473 -0.6246 16 6 2.4377 -7.4863 -0.1944 17 7 1.3514 -7.2670 0.5136 18 14 2.4924 -8.9081 -1.4047 19 1 3.5851 -9.8394 -1.0252 20 1 1.1950 -9.6302 -1.3793 21 1 2.7406 -8.3849 -2.7721 22 6 2.8323 -4.2496 0.3680 23 6 2.2106 -1.3255 0.0006 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5136 27 1 1.5089 2.0378 -0.0083 28 1 3.5360 3.3460 -0.6687 29 1 5.0888 2.5260 -0.9617 30 1 3.6748 2.1416 -1.9720 31 1 5.3531 0.0539 -0.2002 32 1 4.1127 -0.1873 -1.4591 33 1 5.5004 -2.2825 0.3756 34 1 4.3216 -2.7337 -0.8793 35 1 5.3753 -4.8579 1.8954 36 1 5.3957 -4.7731 0.0800 37 1 3.1173 -5.8119 1.9145 38 1 1.3229 -6.5284 1.1419 39 1 2.8587 -4.1881 -0.7200 40 1 1.8452 -4.0456 0.7829 41 1 2.1749 -1.7540 -1.0011 42 1 1.7118 -1.9992 0.6974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:44 Heat of formation + Delta-G solvation = 13.568696 kcal Electronic energy + Delta-G solvation = -18632.987529 eV Core-core repulsion = 15998.698998 eV Total energy + Delta-G solvation = -2634.288532 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -39.60249 -38.25662 -33.62122 -33.42204 -32.27172 -28.38530 -26.78160 -26.61185 -25.16801 -24.77712 -22.60896 -21.10071 -20.14214 -18.94071 -17.51612 -16.79433 -15.65358 -14.99899 -14.75226 -14.30456 -13.95286 -13.75902 -13.63160 -13.57811 -13.00606 -12.60691 -12.42396 -12.37405 -11.98551 -11.72930 -11.64389 -11.45401 -11.29869 -11.13531 -10.87651 -10.66597 -10.47547 -10.36452 -10.11218 -9.93684 -9.58343 -9.26213 -8.69312 -8.62488 -8.38482 -7.87983 -6.37633 -4.08535 2.34677 3.42770 3.43862 3.62894 4.49513 4.60110 4.74231 4.78510 5.07170 5.14129 5.22416 5.31621 5.35091 5.47277 5.55226 5.58386 5.64616 5.70559 5.79027 5.85518 5.86644 5.96656 5.97339 6.05057 6.05704 6.13076 6.20923 6.22993 6.27396 6.40198 6.42875 6.55352 6.62125 6.70183 6.79736 6.89679 7.12997 7.16522 7.53361 7.97717 8.20649 8.40284 8.85212 9.64106 11.01940 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.004894 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.017494 B = 5720.182152 C = 6161.956740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C -0.169 4.169 4 C -0.056 4.056 5 H 0.074 0.926 6 C -0.141 4.141 7 C -0.109 4.109 8 C -0.074 4.074 9 H 0.075 0.925 10 C 0.027 3.973 11 N -0.489 5.489 12 C 0.006 3.994 13 C 0.017 3.983 14 C -0.596 4.596 15 H 0.049 0.951 16 C 0.023 3.977 17 N -0.907 5.907 18 Si 1.066 2.934 19 H -0.288 1.288 20 H -0.282 1.282 21 H -0.289 1.289 22 C 0.007 3.993 23 C -0.079 4.079 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.271 0.729 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 16.254 -2.088 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.112 4.112 3 C -0.187 4.187 4 C -0.075 4.075 5 H 0.092 0.908 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.093 4.093 9 H 0.093 0.907 10 C -0.102 4.102 11 N -0.211 5.211 12 C -0.122 4.122 13 C -0.002 4.002 14 C -0.634 4.634 15 H 0.067 0.933 16 C -0.182 4.182 17 N -0.542 5.542 18 Si 0.895 3.105 19 H -0.214 1.214 20 H -0.207 1.207 21 H -0.215 1.215 22 C -0.122 4.122 23 C -0.116 4.116 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.779 15.347 -2.088 15.591 hybrid contribution 1.084 1.111 -0.264 1.574 sum 2.862 16.458 -2.352 16.870 Atomic orbital electron populations 1.20961 0.92892 1.02139 1.01966 1.21041 0.95589 0.95328 0.99208 1.21808 0.95532 0.96847 1.04505 1.19928 0.92828 0.95392 0.99317 0.90833 1.21787 1.00867 0.97847 0.99344 1.21702 0.99130 0.93876 1.00040 1.21099 0.94324 0.93808 1.00079 0.90687 1.22634 0.98192 0.93336 0.96021 1.68403 1.06996 1.04811 1.40901 1.23911 0.97589 0.91357 0.99392 1.20474 0.90441 0.92241 0.97082 1.21922 1.02332 1.14427 1.24731 0.93268 1.25805 0.92512 1.00642 0.99269 1.70777 1.28407 1.31517 1.23485 0.83583 0.76014 0.75612 0.75337 1.21417 1.20739 1.21523 1.24252 0.94831 0.96233 0.96867 1.20527 0.94919 0.94173 1.01978 0.91635 0.92385 0.91772 0.88454 0.92909 0.92739 0.92726 0.91935 0.91996 0.92077 0.94393 0.91726 0.92680 0.93357 0.91836 0.92499 0.91951 0.91269 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.87 36.00 0.36 -1.09 16 2 C -0.11 -1.49 5.84 -100.94 -0.59 -2.08 16 3 C -0.17 -2.05 8.61 -35.90 -0.31 -2.36 16 4 C -0.06 -0.64 2.96 -92.09 -0.27 -0.91 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.14 -1.33 9.14 37.16 0.34 -0.99 16 7 C -0.11 -1.36 4.61 -26.54 -0.12 -1.48 16 8 C -0.07 -1.10 2.44 -90.40 -0.22 -1.32 16 9 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 10 C 0.03 0.46 4.40 -3.82 -0.02 0.44 16 11 N -0.49 -9.83 6.08 -238.34 -1.45 -11.28 16 12 C 0.01 0.13 7.50 -2.77 -0.02 0.11 16 13 C 0.02 0.42 3.09 -90.84 -0.28 0.14 16 14 C -0.60 -16.53 8.77 -34.44 -0.30 -16.83 16 15 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 17 N -0.91 -27.00 13.65 55.43 0.76 -26.24 16 18 Si 1.07 24.85 29.90 -169.99 -5.08 19.77 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.01 0.16 5.79 -2.77 -0.02 0.14 16 23 C -0.08 -1.21 4.04 -28.18 -0.11 -1.32 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.60 7.89 -51.92 -0.41 0.19 16 26 H 0.06 0.78 8.08 -51.92 -0.42 0.36 16 27 H 0.10 1.06 7.80 -52.49 -0.41 0.65 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.04 0.67 7.34 -51.93 -0.38 0.29 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 37 H 0.05 1.31 7.61 -51.93 -0.40 0.91 16 38 H 0.27 8.04 7.04 -40.82 -0.29 7.75 16 39 H 0.06 1.32 7.43 -51.93 -0.39 0.94 16 40 H 0.06 1.42 7.30 -51.93 -0.38 1.04 16 41 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 42 H 0.08 1.38 6.53 -51.93 -0.34 1.04 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -28.60 325.55 -10.20 -38.79 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.66 Total: 1.04 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.67 Total: -27.00 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.69 Total: -37.52 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.60 -10.20 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.363 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.66 seconds