Wall clock time and date at job start Mon Mar 30 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29448 * 117.95834 * 2 1 4 4 C 1.50073 * 124.06975 * 179.57840 * 3 2 1 5 5 H 1.08996 * 109.35652 * 137.17205 * 4 3 2 6 6 C 1.53005 * 109.35576 * 256.89542 * 4 3 2 7 7 C 1.53007 * 110.15413 * 17.08964 * 4 3 2 8 8 C 1.53395 * 108.45089 * 310.59094 * 7 4 3 9 9 H 1.09002 * 109.64451 * 307.74227 * 8 7 4 10 10 C 1.53000 * 109.81832 * 187.21066 * 8 7 4 11 11 N 1.46896 * 109.47236 * 175.53071 * 10 8 7 12 12 C 1.47482 * 110.99880 * 74.03216 * 11 10 8 13 13 C 1.53511 * 87.93229 * 138.70371 * 12 11 10 14 14 C 1.50703 * 114.17001 * 220.33030 * 13 12 11 15 15 H 1.07996 * 120.00416 * 93.83423 * 14 13 12 16 16 C 1.37881 * 119.99737 * 273.83947 * 14 13 12 17 17 N 1.31510 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00126 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47102 * 89.99510 * 18 16 14 20 20 H 1.48493 * 109.47405 * 209.99868 * 18 16 14 21 21 H 1.48505 * 109.46880 * 330.00204 * 18 16 14 22 22 C 1.47480 * 111.00097 * 170.00048 * 11 10 8 23 23 C 1.50065 * 117.96143 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47178 * 269.98478 * 1 2 3 25 25 H 1.09004 * 109.47005 * 29.98158 * 1 2 3 26 26 H 1.08994 * 109.47508 * 149.98087 * 1 2 3 27 27 H 1.07990 * 117.96661 * 359.54751 * 3 2 1 28 28 H 1.09005 * 109.46949 * 60.00158 * 6 4 3 29 29 H 1.08994 * 109.46760 * 179.97438 * 6 4 3 30 30 H 1.08993 * 109.46938 * 300.00409 * 6 4 3 31 31 H 1.09005 * 109.64767 * 190.90317 * 7 4 3 32 32 H 1.08999 * 109.62946 * 70.27771 * 7 4 3 33 33 H 1.08997 * 109.47175 * 295.53749 * 10 8 7 34 34 H 1.09001 * 109.46778 * 55.52992 * 10 8 7 35 35 H 1.08996 * 113.47323 * 253.46719 * 12 11 10 36 36 H 1.08997 * 113.47413 * 23.93401 * 12 11 10 37 37 H 1.08995 * 114.34540 * 87.63465 * 13 12 11 38 38 H 0.96999 * 119.99972 * 180.02562 * 17 16 14 39 39 H 1.09005 * 113.47370 * 336.06435 * 22 11 10 40 40 H 1.09003 * 113.48024 * 106.52731 * 22 11 10 41 41 H 1.09000 * 109.35624 * 76.89942 * 23 2 1 42 42 H 1.09003 * 109.35912 * 317.31358 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6061 1.3032 0.0091 5 1 3.8896 2.0891 -0.6908 6 6 4.0663 1.6875 1.4168 7 6 4.2792 -0.0073 -0.4041 8 6 3.6705 -1.1473 0.4223 9 1 3.7171 -0.8970 1.4822 10 6 4.4420 -2.4433 0.1655 11 7 3.9224 -3.5039 1.0391 12 6 2.6080 -3.9795 0.5685 13 6 3.0727 -5.4074 0.8875 14 6 2.6601 -6.4336 -0.1361 15 1 3.3316 -6.6940 -0.9408 16 6 1.4252 -7.0402 -0.0452 17 7 1.0650 -7.9354 -0.9387 18 14 0.2639 -6.5904 1.3471 19 1 -0.5995 -5.4581 0.9253 20 1 -0.5847 -7.7620 1.6820 21 1 1.0528 -6.1931 2.5409 22 6 4.4718 -4.8186 0.6586 23 6 2.2106 -1.3255 -0.0006 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8897 -0.5141 27 1 1.5089 2.0379 -0.0075 28 1 3.7794 0.9048 2.1192 29 1 5.1500 1.8036 1.4256 30 1 3.5974 2.6271 1.7085 31 1 5.3502 0.0539 -0.2108 32 1 4.1050 -0.1899 -1.4645 33 1 4.3199 -2.7385 -0.8766 34 1 5.4996 -2.2844 0.3765 35 1 1.7773 -3.6443 1.1894 36 1 2.4382 -3.8052 -0.4940 37 1 2.8836 -5.7227 1.9135 38 1 0.1961 -8.3618 -0.8749 39 1 4.7992 -4.8683 -0.3799 40 1 5.2206 -5.1946 1.3558 41 1 2.1742 -1.7534 -1.0024 42 1 1.7124 -1.9994 0.6963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:47 Heat of formation + Delta-G solvation = 11.869009 kcal Electronic energy + Delta-G solvation = -18937.045183 eV Core-core repulsion = 16302.682948 eV Total energy + Delta-G solvation = -2634.362236 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33083 -39.66980 -35.02843 -34.42973 -33.79218 -30.59087 -28.04659 -27.77992 -27.13386 -26.34189 -24.13489 -22.29381 -21.29858 -20.49085 -19.09451 -18.12285 -17.12585 -16.72411 -16.19715 -15.67692 -15.47370 -15.03297 -14.85436 -14.70398 -14.55246 -14.05027 -13.82055 -13.54242 -13.37983 -13.21772 -13.04173 -13.00982 -12.64275 -12.40001 -12.28596 -12.07998 -11.92260 -11.66249 -11.50967 -11.28767 -11.05863 -10.99389 -10.86582 -10.56109 -9.77005 -9.57612 -8.30102 -6.34740 1.35817 1.37554 1.37823 1.48923 2.35648 3.02476 3.23614 3.66423 3.74152 3.93686 4.03794 4.18607 4.23358 4.26776 4.39618 4.47796 4.52847 4.56281 4.64633 4.68768 4.73373 4.77751 4.81323 4.84658 4.86374 4.93228 4.95075 4.98128 5.05072 5.08343 5.20095 5.24584 5.31960 5.38304 5.47180 5.50073 5.56969 5.64072 5.82885 6.16512 6.28462 6.31153 6.70450 7.31648 8.86136 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.006117 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.889785 B = 4576.221019 C = 5201.592190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.157 4.157 4 C -0.057 4.057 5 H 0.089 0.911 6 C -0.139 4.139 7 C -0.106 4.106 8 C -0.072 4.072 9 H 0.076 0.924 10 C 0.026 3.974 11 N -0.475 5.475 12 C 0.008 3.992 13 C -0.025 4.025 14 C -0.511 4.511 15 H 0.033 0.967 16 C 0.018 3.982 17 N -0.949 5.949 18 Si 0.938 3.062 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.245 1.245 22 C 0.016 3.984 23 C -0.090 4.090 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.266 0.734 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 20.659 3.850 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.134 4.134 3 C -0.175 4.175 4 C -0.075 4.075 5 H 0.107 0.893 6 C -0.196 4.196 7 C -0.144 4.144 8 C -0.090 4.090 9 H 0.095 0.905 10 C -0.103 4.103 11 N -0.197 5.197 12 C -0.121 4.121 13 C -0.045 4.045 14 C -0.549 4.549 15 H 0.052 0.948 16 C -0.179 4.179 17 N -0.589 5.589 18 Si 0.762 3.238 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.168 1.168 22 C -0.113 4.113 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.402 20.844 4.468 21.587 hybrid contribution -0.853 -0.800 -0.830 1.434 sum 2.549 20.045 3.638 20.531 Atomic orbital electron populations 1.20962 0.92269 1.02447 1.02223 1.21022 0.96204 0.94827 1.01323 1.22032 0.96423 0.96867 1.02179 1.20006 0.91841 0.97363 0.98308 0.89302 1.21790 1.01387 1.01185 0.95231 1.21667 1.00077 0.93647 0.99002 1.21090 0.93625 0.93643 1.00686 0.90532 1.22727 1.00023 0.92894 0.94665 1.68818 1.04093 1.02936 1.43837 1.24091 0.93220 0.96668 0.98139 1.20711 0.94732 0.92330 0.96689 1.21140 1.01332 1.21794 1.10648 0.94824 1.25839 0.99734 0.94036 0.98316 1.70049 1.22190 1.28864 1.37753 0.85840 0.79008 0.78107 0.80866 1.19020 1.21223 1.16835 1.23658 0.98172 0.90347 0.99107 1.20752 0.95786 0.95283 1.00871 0.91378 0.90689 0.92948 0.86888 0.93624 0.91552 0.91949 0.90357 0.92475 0.95300 0.89734 0.91666 0.92729 0.92148 0.92461 0.92837 0.90031 0.92626 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.87 71.24 0.70 -2.04 16 2 C -0.13 -3.32 5.84 -15.10 -0.09 -3.41 16 3 C -0.16 -3.31 8.61 27.03 0.23 -3.07 16 4 C -0.06 -1.06 3.12 -11.73 -0.04 -1.09 16 5 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.14 -2.33 8.97 71.98 0.65 -1.69 16 7 C -0.11 -2.25 4.75 30.73 0.15 -2.11 16 8 C -0.07 -1.91 2.40 -10.65 -0.03 -1.93 16 9 H 0.08 2.11 6.44 -2.39 -0.02 2.09 16 10 C 0.03 0.78 4.53 86.30 0.39 1.17 16 11 N -0.47 -17.33 6.41 -927.94 -5.95 -23.28 16 12 C 0.01 0.33 4.46 83.57 0.37 0.70 16 13 C -0.03 -1.19 2.99 -11.20 -0.03 -1.22 16 14 C -0.51 -29.03 9.37 25.60 0.24 -28.79 16 15 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 16 C 0.02 1.07 5.47 84.66 0.46 1.53 16 17 N -0.95 -59.01 13.96 21.45 0.30 -58.72 16 18 Si 0.94 44.07 27.41 68.60 1.88 45.95 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.24 -10.78 6.22 99.48 0.62 -10.16 16 22 C 0.02 0.64 7.27 83.57 0.61 1.24 16 23 C -0.09 -2.63 3.70 29.66 0.11 -2.52 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 1.39 7.89 -2.38 -0.02 1.37 16 26 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 27 H 0.11 2.03 7.80 -2.92 -0.02 2.01 16 28 H 0.04 0.90 6.58 -2.38 -0.02 0.89 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 32 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.03 0.94 7.52 -2.39 -0.02 0.92 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.07 2.62 6.76 -2.39 -0.02 2.61 16 36 H 0.05 2.37 6.69 -2.39 -0.02 2.35 16 37 H 0.06 2.85 6.50 -2.39 -0.02 2.84 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.05 2.19 7.72 -2.38 -0.02 2.17 16 40 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.06 1.77 7.50 -2.39 -0.02 1.75 16 42 H 0.07 2.19 5.23 -2.39 -0.01 2.18 16 Total: -1.00 -62.25 315.72 0.83 -61.42 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.88 Total: 17.85 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.73 Total: -43.22 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -5.65 Total: -82.00 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -62.25 0.83 -61.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.284 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds