Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29447 * 117.96263 * 2 1 4 4 C 1.50072 * 124.07383 * 180.46698 * 3 2 1 5 5 H 1.09001 * 109.35365 * 222.81393 * 4 3 2 6 6 C 1.52996 * 109.35556 * 103.09328 * 4 3 2 7 7 C 1.53007 * 110.15325 * 342.89964 * 4 3 2 8 8 C 1.53396 * 108.45306 * 49.40919 * 7 4 3 9 9 H 1.09000 * 109.81246 * 52.35926 * 8 7 4 10 10 C 1.52996 * 109.64354 * 172.89500 * 8 7 4 11 11 N 1.46900 * 109.47269 * 183.94663 * 10 8 7 12 12 C 1.47958 * 110.99961 * 169.99610 * 11 10 8 13 13 C 1.53933 * 86.17823 * 222.41390 * 12 11 10 14 14 C 1.50702 * 113.73068 * 138.07972 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72127 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47961 * 111.00102 * 70.63698 * 11 10 8 23 23 C 1.50065 * 117.96191 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47494 * 269.98908 * 1 2 3 25 25 H 1.09012 * 109.46519 * 29.99085 * 1 2 3 26 26 H 1.09002 * 109.46687 * 149.98192 * 1 2 3 27 27 H 1.07996 * 117.96414 * 0.47808 * 3 2 1 28 28 H 1.08998 * 109.47806 * 60.00235 * 6 4 3 29 29 H 1.09005 * 109.46816 * 179.97438 * 6 4 3 30 30 H 1.09003 * 109.47448 * 299.99145 * 6 4 3 31 31 H 1.09000 * 109.62901 * 289.72410 * 7 4 3 32 32 H 1.09003 * 109.64271 * 169.10317 * 7 4 3 33 33 H 1.08997 * 109.47287 * 63.94174 * 10 8 7 34 34 H 1.09006 * 109.46684 * 303.94427 * 10 8 7 35 35 H 1.09002 * 113.75733 * 108.09817 * 12 11 10 36 36 H 1.08999 * 113.76210 * 336.73515 * 12 11 10 37 37 H 1.08997 * 113.73816 * 269.25615 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09003 * 113.75693 * 23.26419 * 22 11 10 40 40 H 1.09003 * 113.75376 * 251.90306 * 22 11 10 41 41 H 1.09000 * 109.35734 * 42.64389 * 23 2 1 42 42 H 1.09004 * 109.35650 * 283.05956 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3031 -0.0101 5 1 3.8900 2.0890 0.6898 6 6 4.0654 1.6876 -1.4180 7 6 4.2794 -0.0074 0.4024 8 6 3.6702 -1.1473 -0.4238 9 1 3.7164 -0.9004 -1.4844 10 6 4.4431 -2.4417 -0.1628 11 7 3.9177 -3.5082 -1.0255 12 6 4.7869 -4.7047 -0.9786 13 6 4.5890 -4.7813 -2.5032 14 6 5.8478 -5.1131 -3.2624 15 1 6.7737 -5.2721 -2.7295 16 6 5.8162 -5.2199 -4.6367 17 7 4.6887 -5.0268 -5.2855 18 14 7.3750 -5.6387 -5.5769 19 1 7.8855 -6.9585 -5.1263 20 1 7.0766 -5.6931 -7.0307 21 1 8.4022 -4.5972 -5.3216 22 6 4.2827 -3.2741 -2.4401 23 6 2.2106 -1.3255 -0.0006 24 1 -0.3634 -0.0002 1.0276 25 1 -0.3633 0.8902 -0.5138 26 1 -0.3633 -0.8899 -0.5141 27 1 1.5089 2.0379 0.0080 28 1 3.5964 2.6275 -1.7092 29 1 5.1491 1.8046 -1.4273 30 1 3.7781 0.9051 -2.1203 31 1 4.1060 -0.1903 1.4629 32 1 5.3503 0.0539 0.2084 33 1 4.3275 -2.7295 0.8822 34 1 5.4994 -2.2845 -0.3816 35 1 4.3505 -5.5435 -0.4364 36 1 5.8129 -4.4907 -0.6791 37 1 3.7377 -5.3914 -2.8050 38 1 4.6666 -5.1016 -6.2524 39 1 5.1612 -2.6417 -2.5681 40 1 3.4434 -2.9699 -3.0656 41 1 1.7119 -1.9990 -0.6976 42 1 2.1748 -1.7540 1.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 18.463220 kcal Electronic energy + Delta-G solvation = -18679.045774 eV Core-core repulsion = 16044.969485 eV Total energy + Delta-G solvation = -2634.076289 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.55434 -38.17016 -33.54344 -33.10352 -32.10558 -28.40953 -26.77773 -26.46147 -25.34901 -24.90018 -22.75527 -21.09982 -20.02048 -18.47634 -17.24142 -16.47803 -15.48925 -14.93072 -14.74596 -14.35456 -14.08329 -13.86366 -13.59594 -13.20036 -12.95128 -12.61790 -12.43352 -12.26014 -11.86284 -11.74142 -11.43054 -11.34780 -11.25535 -11.07265 -10.92726 -10.72792 -10.41885 -10.17183 -10.03885 -10.00860 -9.55443 -9.08070 -8.94106 -8.61764 -8.41594 -7.79843 -6.02876 -4.07186 2.36946 3.30953 3.36065 3.38241 4.41736 4.69129 4.80557 4.91645 5.07328 5.22397 5.27402 5.34672 5.42715 5.53922 5.60654 5.66257 5.69506 5.82153 5.90117 5.91431 5.97884 6.00495 6.04069 6.09124 6.15351 6.25719 6.32466 6.35807 6.45429 6.52268 6.58337 6.68074 6.70555 6.83757 6.91744 7.16816 7.19408 7.31008 7.75673 7.94701 8.15967 8.40480 8.95234 9.57409 11.06532 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028497 B = 0.004964 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.311729 B = 5638.898940 C = 5828.697247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C -0.167 4.167 4 C -0.056 4.056 5 H 0.070 0.930 6 C -0.143 4.143 7 C -0.110 4.110 8 C -0.080 4.080 9 H 0.076 0.924 10 C 0.029 3.971 11 N -0.489 5.489 12 C -0.003 4.003 13 C 0.038 3.962 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.015 3.985 23 C -0.068 4.068 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.262 0.738 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 11.457 10.313 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 C -0.185 4.185 4 C -0.074 4.074 5 H 0.088 0.912 6 C -0.200 4.200 7 C -0.148 4.148 8 C -0.099 4.099 9 H 0.094 0.906 10 C -0.100 4.100 11 N -0.212 5.212 12 C -0.132 4.132 13 C 0.019 3.981 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.114 4.114 23 C -0.105 4.105 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.961 11.425 10.325 16.178 hybrid contribution 1.672 0.092 -0.709 1.819 sum -3.288 11.517 9.617 15.360 Atomic orbital electron populations 1.20959 0.92997 1.02281 1.01604 1.21072 0.95502 0.95552 0.99344 1.21783 0.95609 0.96862 1.04204 1.19928 0.92609 0.97551 0.97308 0.91218 1.21831 1.00612 1.01279 0.96326 1.21701 0.99360 0.94185 0.99604 1.21171 0.94577 0.93789 1.00375 0.90566 1.22601 0.96431 0.92708 0.98304 1.68468 1.44658 1.03454 1.04590 1.24063 0.94520 0.93198 1.01416 1.20309 0.97472 0.91834 0.88438 1.21069 0.94630 1.48408 0.91534 0.92635 1.25005 0.95951 0.94820 0.97810 1.69959 1.25404 1.48960 1.08112 0.86703 0.83694 0.79041 0.78819 1.20181 1.21247 1.20292 1.23993 0.98014 1.01761 0.87643 1.20335 0.94685 0.93671 1.01803 0.91977 0.92372 0.91736 0.88609 0.93058 0.92686 0.92046 0.92107 0.91904 0.92095 0.94840 0.91835 0.92916 0.92313 0.92865 0.93026 0.91739 0.90051 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.87 36.01 0.36 -0.97 16 2 C -0.11 -1.47 5.84 -100.94 -0.59 -2.06 16 3 C -0.17 -2.02 8.61 -35.90 -0.31 -2.33 16 4 C -0.06 -0.65 3.12 -92.07 -0.29 -0.94 16 5 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.14 -1.69 8.97 37.16 0.33 -1.36 16 7 C -0.11 -1.41 4.74 -26.52 -0.13 -1.53 16 8 C -0.08 -1.21 2.19 -90.41 -0.20 -1.41 16 9 H 0.08 1.29 5.75 -51.93 -0.30 0.99 16 10 C 0.03 0.49 4.21 -3.83 -0.02 0.47 16 11 N -0.49 -9.86 5.93 -238.38 -1.41 -11.27 16 12 C 0.00 -0.07 7.53 -2.77 -0.02 -0.09 16 13 C 0.04 0.97 3.61 -90.84 -0.33 0.64 16 14 C -0.52 -14.21 8.77 -34.44 -0.30 -14.51 16 15 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 17 N -0.89 -25.70 13.27 55.43 0.74 -24.97 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.01 0.34 6.60 -2.77 -0.02 0.32 16 23 C -0.07 -0.98 4.88 -28.18 -0.14 -1.12 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.58 7.90 -51.92 -0.41 0.17 16 26 H 0.06 0.71 8.03 -51.93 -0.42 0.30 16 27 H 0.10 1.05 7.81 -52.49 -0.41 0.64 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.83 6.59 -51.93 -0.34 0.48 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.03 0.59 7.69 -51.93 -0.40 0.19 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 1.11 7.74 -51.93 -0.40 0.71 16 37 H 0.06 1.63 8.12 -51.93 -0.42 1.21 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.05 1.22 7.73 -51.93 -0.40 0.81 16 40 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.31 8.00 -51.93 -0.42 0.90 16 42 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -27.77 327.20 -10.19 -37.96 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.68 Total: 0.33 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.74 Total: -23.14 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.68 Total: -36.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.77 -10.19 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.426 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds