Wall clock time and date at job start Mon Mar 30 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29447 * 117.96263 * 2 1 4 4 C 1.50072 * 124.07383 * 180.46698 * 3 2 1 5 5 H 1.09001 * 109.35365 * 222.81393 * 4 3 2 6 6 C 1.52996 * 109.35556 * 103.09328 * 4 3 2 7 7 C 1.53007 * 110.15325 * 342.89964 * 4 3 2 8 8 C 1.53396 * 108.45306 * 49.40919 * 7 4 3 9 9 H 1.09000 * 109.81246 * 52.35926 * 8 7 4 10 10 C 1.52996 * 109.64354 * 172.89500 * 8 7 4 11 11 N 1.46900 * 109.47269 * 183.94663 * 10 8 7 12 12 C 1.47958 * 110.99961 * 169.99610 * 11 10 8 13 13 C 1.53933 * 86.17823 * 222.41390 * 12 11 10 14 14 C 1.50702 * 113.73068 * 138.07972 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72127 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47961 * 111.00102 * 70.63698 * 11 10 8 23 23 C 1.50065 * 117.96191 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47494 * 269.98908 * 1 2 3 25 25 H 1.09012 * 109.46519 * 29.99085 * 1 2 3 26 26 H 1.09002 * 109.46687 * 149.98192 * 1 2 3 27 27 H 1.07996 * 117.96414 * 0.47808 * 3 2 1 28 28 H 1.08998 * 109.47806 * 60.00235 * 6 4 3 29 29 H 1.09005 * 109.46816 * 179.97438 * 6 4 3 30 30 H 1.09003 * 109.47448 * 299.99145 * 6 4 3 31 31 H 1.09000 * 109.62901 * 289.72410 * 7 4 3 32 32 H 1.09003 * 109.64271 * 169.10317 * 7 4 3 33 33 H 1.08997 * 109.47287 * 63.94174 * 10 8 7 34 34 H 1.09006 * 109.46684 * 303.94427 * 10 8 7 35 35 H 1.09002 * 113.75733 * 108.09817 * 12 11 10 36 36 H 1.08999 * 113.76210 * 336.73515 * 12 11 10 37 37 H 1.08997 * 113.73816 * 269.25615 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09003 * 113.75693 * 23.26419 * 22 11 10 40 40 H 1.09003 * 113.75376 * 251.90306 * 22 11 10 41 41 H 1.09000 * 109.35734 * 42.64389 * 23 2 1 42 42 H 1.09004 * 109.35650 * 283.05956 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3031 -0.0101 5 1 3.8900 2.0890 0.6898 6 6 4.0654 1.6876 -1.4180 7 6 4.2794 -0.0074 0.4024 8 6 3.6702 -1.1473 -0.4238 9 1 3.7164 -0.9004 -1.4844 10 6 4.4431 -2.4417 -0.1628 11 7 3.9177 -3.5082 -1.0255 12 6 4.7869 -4.7047 -0.9786 13 6 4.5890 -4.7813 -2.5032 14 6 5.8478 -5.1131 -3.2624 15 1 6.7737 -5.2721 -2.7295 16 6 5.8162 -5.2199 -4.6367 17 7 4.6887 -5.0268 -5.2855 18 14 7.3750 -5.6387 -5.5769 19 1 7.8855 -6.9585 -5.1263 20 1 7.0766 -5.6931 -7.0307 21 1 8.4022 -4.5972 -5.3216 22 6 4.2827 -3.2741 -2.4401 23 6 2.2106 -1.3255 -0.0006 24 1 -0.3634 -0.0002 1.0276 25 1 -0.3633 0.8902 -0.5138 26 1 -0.3633 -0.8899 -0.5141 27 1 1.5089 2.0379 0.0080 28 1 3.5964 2.6275 -1.7092 29 1 5.1491 1.8046 -1.4273 30 1 3.7781 0.9051 -2.1203 31 1 4.1060 -0.1903 1.4629 32 1 5.3503 0.0539 0.2084 33 1 4.3275 -2.7295 0.8822 34 1 5.4994 -2.2845 -0.3816 35 1 4.3505 -5.5435 -0.4364 36 1 5.8129 -4.4907 -0.6791 37 1 3.7377 -5.3914 -2.8050 38 1 4.6666 -5.1016 -6.2524 39 1 5.1612 -2.6417 -2.5681 40 1 3.4434 -2.9699 -3.0656 41 1 1.7119 -1.9990 -0.6976 42 1 2.1748 -1.7540 1.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:50 Heat of formation + Delta-G solvation = 3.603746 kcal Electronic energy + Delta-G solvation = -18679.690130 eV Core-core repulsion = 16044.969485 eV Total energy + Delta-G solvation = -2634.720644 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 4.87 seconds Orbital eigenvalues (eV) -40.92811 -39.61270 -35.00740 -34.35905 -33.70026 -30.07730 -27.75629 -27.51932 -27.06776 -26.70996 -24.31708 -22.26374 -21.26388 -20.34765 -18.74226 -18.08940 -16.75272 -16.58951 -16.29739 -15.86552 -15.55194 -15.09958 -14.70203 -14.53147 -14.19986 -13.85393 -13.65203 -13.45819 -13.32380 -13.28886 -13.00451 -12.83743 -12.67896 -12.42811 -12.32384 -12.19052 -12.04845 -11.67558 -11.35753 -11.30784 -11.00027 -10.95776 -10.75804 -10.49562 -9.58143 -9.53625 -8.15061 -6.26755 1.40701 1.41930 1.43282 1.51249 2.41960 3.14289 3.26199 3.69713 3.80579 3.89850 4.21284 4.24661 4.29912 4.35054 4.50263 4.51087 4.59996 4.62129 4.66666 4.74301 4.78411 4.84155 4.85331 4.91983 4.93963 4.95280 5.01558 5.04188 5.08793 5.20563 5.22841 5.27302 5.35447 5.43684 5.50970 5.62214 5.64438 5.85297 5.86668 6.19921 6.30192 6.43268 6.82095 7.41583 8.94264 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028497 B = 0.004964 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.311729 B = 5638.898940 C = 5828.697247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.132 4.132 3 C -0.162 4.162 4 C -0.056 4.056 5 H 0.092 0.908 6 C -0.142 4.142 7 C -0.106 4.106 8 C -0.077 4.077 9 H 0.052 0.948 10 C 0.029 3.971 11 N -0.484 5.484 12 C 0.011 3.989 13 C 0.019 3.981 14 C -0.534 4.534 15 H 0.058 0.942 16 C 0.015 3.985 17 N -0.922 5.922 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.031 3.969 23 C -0.063 4.063 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 12.756 11.700 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.132 4.132 3 C -0.180 4.180 4 C -0.074 4.074 5 H 0.110 0.890 6 C -0.199 4.199 7 C -0.144 4.144 8 C -0.095 4.095 9 H 0.071 0.929 10 C -0.099 4.099 11 N -0.206 5.206 12 C -0.118 4.118 13 C 0.000 4.000 14 C -0.572 4.572 15 H 0.076 0.924 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.782 3.218 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.099 4.099 23 C -0.100 4.100 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.165 12.724 11.732 17.801 hybrid contribution 1.402 -0.313 -1.112 1.816 sum -2.764 12.412 10.620 16.567 Atomic orbital electron populations 1.20950 0.91742 1.02404 1.02487 1.21127 0.96548 0.94912 1.00657 1.21993 0.96013 0.97178 1.02840 1.19989 0.92337 0.97509 0.97603 0.88992 1.21813 1.01150 1.01049 0.95914 1.21673 0.99416 0.93631 0.99634 1.21102 0.95145 0.93759 0.99540 0.92940 1.22680 0.96304 0.92539 0.98391 1.68412 1.44637 1.04227 1.03337 1.23932 0.95262 0.94154 0.98452 1.20303 0.95769 0.92615 0.91299 1.21412 0.95332 1.48276 0.92184 0.92427 1.25825 0.99091 0.94705 0.98814 1.70092 1.27569 1.50093 1.08328 0.85637 0.79774 0.79113 0.77305 1.19325 1.20988 1.19473 1.23650 0.96803 0.99962 0.89460 1.20230 0.94106 0.94459 1.01238 0.90679 0.91294 0.92595 0.86882 0.91708 0.92102 0.94500 0.90994 0.91627 0.90183 0.95259 0.90398 0.92180 0.95713 0.92867 0.93774 0.93669 0.92602 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.87 71.24 0.70 -1.73 16 2 C -0.13 -3.22 5.84 -15.10 -0.09 -3.31 16 3 C -0.16 -3.57 8.61 27.04 0.23 -3.34 16 4 C -0.06 -1.18 3.12 -11.74 -0.04 -1.22 16 5 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.14 -3.13 8.97 71.98 0.65 -2.49 16 7 C -0.11 -2.48 4.74 30.73 0.15 -2.33 16 8 C -0.08 -2.27 2.19 -10.66 -0.02 -2.29 16 9 H 0.05 1.81 5.75 -2.39 -0.01 1.80 16 10 C 0.03 0.97 4.21 86.30 0.36 1.34 16 11 N -0.48 -19.58 5.93 -908.08 -5.38 -24.96 16 12 C 0.01 0.45 7.53 86.41 0.65 1.10 16 13 C 0.02 1.00 3.61 -10.90 -0.04 0.96 16 14 C -0.53 -29.66 8.77 25.60 0.22 -29.43 16 15 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.01 0.84 5.46 84.66 0.46 1.30 16 17 N -0.92 -54.77 13.27 21.45 0.28 -54.49 16 18 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.03 1.45 6.60 86.40 0.57 2.02 16 23 C -0.06 -1.79 4.88 29.65 0.14 -1.65 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.24 7.90 -2.38 -0.02 1.22 16 26 H 0.05 1.22 8.03 -2.39 -0.02 1.20 16 27 H 0.11 2.12 7.81 -2.91 -0.02 2.09 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.04 0.98 6.59 -2.39 -0.02 0.97 16 31 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 32 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 34 H 0.03 1.00 7.69 -2.38 -0.02 0.98 16 35 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.06 2.46 7.74 -2.39 -0.02 2.44 16 37 H 0.02 1.43 8.12 -2.39 -0.02 1.42 16 38 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.04 2.14 7.73 -2.39 -0.02 2.12 16 40 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 1.84 8.00 -2.39 -0.02 1.83 16 42 H 0.07 1.94 8.08 -2.38 -0.02 1.93 16 Total: -1.00 -59.96 327.20 1.83 -58.13 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.95 Total: 16.80 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.95 Total: -41.08 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -5.10 Total: -79.45 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -59.96 1.83 -58.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.730 kcal (2) G-P(sol) polarization free energy of solvation -59.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.87 seconds