Wall clock time and date at job start Mon Mar 30 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29439 * 117.96154 * 2 1 4 4 C 1.50079 * 124.07093 * 179.30096 * 3 2 1 5 5 C 1.53022 * 110.09250 * 17.57960 * 4 3 2 6 6 C 1.53398 * 108.44007 * 310.37563 * 5 4 3 7 7 H 1.09006 * 109.64208 * 307.75510 * 6 5 4 8 8 C 1.52991 * 109.64337 * 187.12135 * 6 5 4 9 9 C 1.50062 * 117.96135 * 180.26530 * 2 1 3 10 10 H 1.08999 * 109.35988 * 76.90098 * 9 2 1 11 11 C 1.53008 * 109.35947 * 317.31467 * 9 2 1 12 12 N 1.46903 * 109.46833 * 65.00054 * 11 9 2 13 13 C 1.47480 * 110.99954 * 74.02937 * 12 11 9 14 14 C 1.53516 * 87.92880 * 138.70175 * 13 12 11 15 15 C 1.50700 * 114.16758 * 220.32909 * 14 13 12 16 16 H 1.07998 * 120.00030 * 93.84218 * 15 14 13 17 17 C 1.37876 * 119.99931 * 273.83870 * 15 14 13 18 18 N 1.31511 * 120.00472 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99996 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46990 * 59.99972 * 19 17 15 21 21 H 1.48498 * 109.46982 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47050 * 300.00431 * 19 17 15 23 23 C 1.47484 * 110.99765 * 170.00235 * 12 11 9 24 24 H 1.09002 * 109.47152 * 269.73525 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.73626 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.73607 * 1 2 3 27 27 H 1.07997 * 117.96461 * 359.52664 * 3 2 1 28 28 H 1.08998 * 109.53701 * 257.29150 * 4 3 2 29 29 H 1.08998 * 109.11997 * 137.60179 * 4 3 2 30 30 H 1.09003 * 109.64116 * 190.69316 * 5 4 3 31 31 H 1.08997 * 109.64363 * 70.06226 * 5 4 3 32 32 H 1.08996 * 109.47115 * 301.05297 * 8 6 5 33 33 H 1.09005 * 109.47097 * 61.05954 * 8 6 5 34 34 H 1.08999 * 109.46933 * 181.05519 * 8 6 5 35 35 H 1.08999 * 109.47326 * 184.99960 * 11 9 2 36 36 H 1.09000 * 109.46661 * 305.00361 * 11 9 2 37 37 H 1.09000 * 113.47671 * 253.46798 * 13 12 11 38 38 H 1.09007 * 113.47666 * 23.94033 * 13 12 11 39 39 H 1.09000 * 114.17005 * 87.62609 * 14 13 12 40 40 H 0.96992 * 120.00464 * 179.97438 * 18 17 15 41 41 H 1.08999 * 113.46949 * 336.06138 * 23 12 11 42 42 H 1.09000 * 113.47355 * 106.52819 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6061 1.3031 0.0152 5 6 4.2792 -0.0056 -0.4042 6 6 3.6706 -1.1493 0.4173 7 1 3.7172 -0.9035 1.4782 8 6 4.4433 -2.4423 0.1500 9 6 2.2106 -1.3254 -0.0061 10 1 2.1742 -1.7492 -1.0097 11 6 1.5112 -2.2755 0.9682 12 7 0.1508 -2.5540 0.4889 13 6 0.1749 -3.4674 -0.6688 14 6 -1.0343 -4.1872 -0.0554 15 6 -0.9849 -5.6886 -0.1757 16 1 -0.5768 -6.2817 0.6292 17 6 -1.4609 -6.3050 -1.3135 18 7 -1.9575 -5.5828 -2.2940 19 14 -1.4003 -8.1661 -1.4625 20 1 -2.1933 -8.7765 -0.3653 21 1 -1.9680 -8.5766 -2.7718 22 1 0.0090 -8.6246 -1.3688 23 6 -0.4702 -3.6437 1.2648 24 1 -0.3633 -0.0047 1.0277 25 1 -0.3633 -0.8876 -0.5179 26 1 -0.3633 0.8924 -0.5097 27 1 1.5089 2.0378 -0.0079 28 1 3.9337 1.5723 1.0193 29 1 3.8877 2.0933 -0.6808 30 1 5.3502 0.0548 -0.2106 31 1 4.1050 -0.1837 -1.4653 32 1 4.4009 -2.6778 -0.9134 33 1 5.4826 -2.3137 0.4526 34 1 3.9970 -3.2568 0.7205 35 1 2.0719 -3.2080 1.0320 36 1 1.4616 -1.8130 1.9540 37 1 -0.0473 -2.9747 -1.6154 38 1 1.0711 -4.0863 -0.7150 39 1 -1.9974 -3.7620 -0.3379 40 1 -2.2920 -6.0164 -3.0945 41 1 0.2538 -4.3094 1.7345 42 1 -1.2391 -3.3003 1.9569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:48 Heat of formation + Delta-G solvation = 17.926564 kcal Electronic energy + Delta-G solvation = -19009.463557 eV Core-core repulsion = 16375.363997 eV Total energy + Delta-G solvation = -2634.099560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23381 -39.52858 -34.87901 -34.52421 -33.49847 -30.50417 -28.48239 -27.09946 -26.67038 -26.32805 -24.07167 -22.07929 -21.52069 -20.44882 -18.68328 -18.56052 -16.80638 -16.52465 -16.19363 -15.88283 -15.20971 -15.15342 -14.75768 -14.46335 -14.21357 -13.80219 -13.52653 -13.36968 -13.21856 -13.18787 -12.92087 -12.85354 -12.63580 -12.53820 -12.41397 -12.13864 -11.99027 -11.69871 -11.50201 -11.17697 -11.00859 -10.87124 -10.74553 -10.48080 -9.52820 -9.43248 -8.14486 -6.25783 1.42654 1.43792 1.45830 1.51762 2.42502 3.14758 3.32676 3.75121 3.78409 3.88326 4.14604 4.28590 4.34679 4.41061 4.47991 4.49101 4.61012 4.63127 4.67189 4.72517 4.79760 4.82146 4.91291 4.96046 5.00720 5.05229 5.06050 5.11652 5.14022 5.20651 5.24738 5.32448 5.40612 5.50306 5.58764 5.61439 5.65605 5.86653 5.92415 6.27648 6.31885 6.44836 6.83244 7.42591 8.94962 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.005348 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.478734 B = 5234.135804 C = 5601.945328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.112 4.112 3 C -0.176 4.176 4 C -0.083 4.083 5 C -0.111 4.111 6 C -0.081 4.081 7 H 0.076 0.924 8 C -0.147 4.147 9 C -0.037 4.037 10 H 0.055 0.945 11 C 0.033 3.967 12 N -0.465 5.465 13 C 0.022 3.978 14 C 0.023 3.977 15 C -0.531 4.531 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.922 5.922 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.270 1.270 23 C 0.005 3.995 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.397 10.976 5.304 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.194 4.194 4 C -0.120 4.120 5 C -0.149 4.149 6 C -0.100 4.100 7 H 0.094 0.906 8 C -0.204 4.204 9 C -0.055 4.055 10 H 0.074 0.926 11 C -0.096 4.096 12 N -0.187 5.187 13 C -0.107 4.107 14 C 0.004 3.996 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.124 4.124 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.019 11.649 5.100 17.498 hybrid contribution -0.044 -1.782 -0.353 1.817 sum 11.975 9.867 4.746 16.226 Atomic orbital electron populations 1.21001 0.92739 1.01523 1.01584 1.20870 0.95988 0.94293 1.00098 1.22073 0.97148 0.96646 1.03537 1.20429 0.91465 0.97836 1.02268 1.21658 1.00173 0.93855 0.99189 1.21175 0.92549 0.95938 1.00378 0.90557 1.21854 1.00559 0.96673 1.01305 1.19963 0.94395 0.92967 0.98218 0.92634 1.22660 0.90112 0.98065 0.98760 1.69086 1.16132 1.28576 1.04862 1.23653 0.99603 0.93103 0.94331 1.20028 0.93480 0.94109 0.92025 1.21345 1.40820 0.92383 1.02372 0.92430 1.25805 0.94312 1.02660 0.95537 1.70082 1.41615 1.37213 1.07142 0.85651 0.78658 0.80256 0.77343 1.19369 1.21041 1.19485 1.23839 0.98590 0.92337 0.97618 0.92578 0.91178 0.93456 0.87716 0.90086 0.90165 0.89804 0.92853 0.93434 0.90768 0.93419 0.94452 0.90795 0.93963 0.93707 0.95247 0.92879 0.92420 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.57 8.35 71.24 0.59 -2.98 16 2 C -0.11 -3.27 5.48 -15.09 -0.08 -3.35 16 3 C -0.18 -4.28 9.37 27.05 0.25 -4.03 16 4 C -0.08 -1.58 6.12 29.66 0.18 -1.39 16 5 C -0.11 -2.20 5.30 30.73 0.16 -2.04 16 6 C -0.08 -1.89 2.20 -10.65 -0.02 -1.91 16 7 H 0.08 1.69 8.10 -2.38 -0.02 1.67 16 8 C -0.15 -3.27 9.04 71.98 0.65 -2.62 16 9 C -0.04 -1.09 1.87 -11.73 -0.02 -1.12 16 10 H 0.06 1.91 7.49 -2.39 -0.02 1.89 16 11 C 0.03 1.07 3.94 86.31 0.34 1.41 16 12 N -0.46 -18.23 3.12 -927.76 -2.89 -21.13 16 13 C 0.02 1.04 6.20 83.58 0.52 1.56 16 14 C 0.02 1.16 3.77 -11.19 -0.04 1.12 16 15 C -0.53 -29.21 8.82 25.60 0.23 -28.99 16 16 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 0.90 5.46 84.65 0.46 1.37 16 18 N -0.92 -54.40 13.26 21.45 0.28 -54.11 16 19 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 C 0.00 0.20 7.28 83.58 0.61 0.81 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 2.67 5.70 -2.39 -0.01 2.66 16 26 H 0.05 1.37 7.88 -2.38 -0.02 1.35 16 27 H 0.10 2.38 7.80 -2.91 -0.02 2.36 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.17 8.12 -2.39 -0.02 1.15 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.05 1.16 6.68 -2.39 -0.02 1.14 16 35 H 0.04 1.25 6.00 -2.39 -0.01 1.24 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 2.09 8.13 -2.39 -0.02 2.07 16 38 H 0.04 2.11 7.66 -2.38 -0.02 2.09 16 39 H 0.03 1.68 8.11 -2.39 -0.02 1.66 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.06 2.34 7.72 -2.39 -0.02 2.33 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -58.75 321.08 4.20 -54.55 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.95 Total: 17.50 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.83 Total: -42.17 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -2.61 Total: -75.24 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -58.75 4.20 -54.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.477 kcal (2) G-P(sol) polarization free energy of solvation -58.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds