Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29444 * 117.96041 * 2 1 4 4 C 1.50063 * 124.07528 * 179.25024 * 3 2 1 5 5 C 1.53021 * 110.14908 * 17.13191 * 4 3 2 6 6 C 1.53394 * 108.43882 * 310.56495 * 5 4 3 7 7 H 1.09004 * 109.63913 * 187.11511 * 6 5 4 8 8 C 1.52992 * 109.64014 * 307.53502 * 6 5 4 9 9 C 1.50064 * 117.96341 * 179.73923 * 2 1 3 10 10 H 1.09001 * 109.36335 * 77.20412 * 9 2 1 11 11 C 1.53006 * 109.35990 * 317.61604 * 9 2 1 12 12 N 1.46893 * 109.47037 * 177.64296 * 11 9 2 13 13 C 1.47473 * 111.00321 * 262.59398 * 12 11 9 14 14 C 1.53518 * 87.93455 * 221.29963 * 13 12 11 15 15 C 1.50705 * 114.17146 * 139.66816 * 14 13 12 16 16 H 1.07999 * 119.99498 * 266.15903 * 15 14 13 17 17 C 1.37877 * 119.99736 * 86.16350 * 15 14 13 18 18 N 1.31513 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99703 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46853 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47096 * 119.99411 * 19 17 15 22 22 H 1.48498 * 109.46791 * 239.99942 * 19 17 15 23 23 C 1.47483 * 110.99744 * 166.61999 * 12 11 9 24 24 H 1.08994 * 109.47114 * 5.14950 * 1 2 3 25 25 H 1.09004 * 109.47356 * 125.15893 * 1 2 3 26 26 H 1.09004 * 109.46719 * 245.14948 * 1 2 3 27 27 H 1.08006 * 117.96172 * 359.23371 * 3 2 1 28 28 H 1.09007 * 109.36000 * 137.33948 * 4 3 2 29 29 H 1.09002 * 109.36023 * 257.06370 * 4 3 2 30 30 H 1.09002 * 109.63789 * 70.24883 * 5 4 3 31 31 H 1.09001 * 109.64180 * 190.87645 * 5 4 3 32 32 H 1.08998 * 109.47410 * 60.00089 * 8 6 5 33 33 H 1.09004 * 109.47240 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47829 * 299.99957 * 8 6 5 35 35 H 1.09001 * 109.46748 * 297.64562 * 11 9 2 36 36 H 1.08994 * 109.46573 * 57.64666 * 11 9 2 37 37 H 1.09003 * 113.47751 * 336.05994 * 13 12 11 38 38 H 1.08998 * 113.48183 * 106.53518 * 13 12 11 39 39 H 1.08999 * 114.16649 * 272.37509 * 14 13 12 40 40 H 0.96998 * 119.99931 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.47676 * 253.47075 * 23 12 11 42 42 H 1.09001 * 113.47705 * 23.94281 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6059 1.3032 0.0163 5 6 4.2810 -0.0082 -0.3911 6 6 3.6685 -1.1462 0.4351 7 1 4.2200 -2.0688 0.2534 8 6 3.7319 -0.7937 1.9225 9 6 2.2106 -1.3254 0.0060 10 1 2.1789 -1.7560 -0.9948 11 6 1.5067 -2.2690 0.9834 12 7 2.1590 -3.5847 0.9495 13 6 1.4301 -4.5134 0.0657 14 6 1.6579 -5.6067 1.1191 15 6 0.4719 -6.5108 1.3365 16 1 -0.2365 -6.2925 2.1219 17 6 0.2916 -7.6166 0.5329 18 7 1.1541 -7.8820 -0.4237 19 14 -1.1789 -8.7368 0.8021 20 1 -1.9928 -8.2222 1.9324 21 1 -2.0073 -8.7708 -0.4299 22 1 -0.7050 -10.1082 1.1180 23 6 1.7279 -4.4177 2.0876 24 1 -0.3633 1.0235 -0.0922 25 1 -0.3634 -0.5918 -0.8402 26 1 -0.3633 -0.4319 0.9326 27 1 1.5088 2.0379 -0.0128 28 1 3.8927 2.0894 -0.6822 29 1 3.9291 1.5768 1.0207 30 1 4.1118 -0.1933 -1.4519 31 1 5.3511 0.0537 -0.1930 32 1 3.1735 0.1250 2.1023 33 1 3.2965 -1.6042 2.5069 34 1 4.7713 -0.6508 2.2182 35 1 1.5675 -1.8591 1.9916 36 1 0.4605 -2.3746 0.6966 37 1 0.3804 -4.2516 -0.0682 38 1 1.9408 -4.7062 -0.8777 39 1 2.5982 -6.1462 1.0060 40 1 1.0274 -8.6602 -0.9887 41 1 2.4911 -4.5294 2.8577 42 1 0.7578 -4.1304 2.4932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = 28.038561 kcal Electronic energy + Delta-G solvation = -18908.021193 eV Core-core repulsion = 16274.360122 eV Total energy + Delta-G solvation = -2633.661071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.88380 -38.30362 -33.34596 -33.03317 -31.99287 -28.74959 -26.95234 -26.49607 -25.19947 -24.66257 -23.01621 -20.76281 -20.26156 -18.52432 -16.74503 -16.58199 -15.58403 -15.13713 -14.73883 -14.56533 -14.21250 -13.96264 -13.34069 -13.07153 -12.91891 -12.74858 -12.36648 -11.98586 -11.85099 -11.80495 -11.53987 -11.44448 -11.14634 -11.05561 -10.95923 -10.61706 -10.40539 -10.10087 -9.99095 -9.85319 -9.59176 -9.11738 -8.89885 -8.60024 -8.42395 -7.89338 -6.04411 -4.08561 2.36595 3.27950 3.36325 3.39835 4.40718 4.69611 4.84826 4.99970 5.08443 5.24613 5.26867 5.40546 5.51136 5.53404 5.60812 5.64531 5.73908 5.78248 5.83644 5.93539 5.95457 6.06201 6.09154 6.15367 6.17019 6.24016 6.33322 6.39949 6.47877 6.53280 6.62005 6.67181 6.72196 6.79670 6.93657 7.12024 7.18280 7.28859 7.74787 7.93742 8.14901 8.39868 8.94891 9.56364 11.05236 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.038388 B = 0.004877 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.221050 B = 5739.696737 C = 5997.773264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C -0.171 4.171 4 C -0.085 4.085 5 C -0.118 4.118 6 C -0.074 4.074 7 H 0.083 0.917 8 C -0.145 4.145 9 C -0.036 4.036 10 H 0.076 0.924 11 C 0.027 3.973 12 N -0.480 5.480 13 C 0.005 3.995 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.005 4.005 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 16.228 0.919 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.107 4.107 3 C -0.189 4.189 4 C -0.122 4.122 5 C -0.155 4.155 6 C -0.092 4.092 7 H 0.102 0.898 8 C -0.202 4.202 9 C -0.054 4.054 10 H 0.094 0.906 11 C -0.102 4.102 12 N -0.202 5.202 13 C -0.124 4.124 14 C 0.022 3.978 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.438 16.290 0.665 16.662 hybrid contribution -1.848 -0.587 0.090 1.941 sum 1.590 15.703 0.754 15.801 Atomic orbital electron populations 1.21005 0.93032 1.01627 1.02336 1.20950 0.95475 0.95027 0.99262 1.21820 0.96026 0.96673 1.04361 1.20399 0.92849 0.97774 1.01187 1.21693 0.99089 0.94864 0.99901 1.20989 0.95196 0.98228 0.94800 0.89821 1.21883 1.00668 1.01363 0.96250 1.19871 0.94301 0.91533 0.99733 0.90572 1.22735 0.96080 0.92615 0.98776 1.68774 1.44961 0.99396 1.07097 1.24090 0.95234 0.94550 0.98490 1.20096 0.98088 0.90168 0.89473 1.21086 1.08643 1.09076 1.16526 0.92474 1.25011 0.96217 0.97276 0.95086 1.69978 1.35547 1.27621 1.19244 0.86584 0.82878 0.80748 0.78082 1.19748 1.21016 1.20911 1.23966 0.97618 0.96582 0.95185 0.92618 0.91751 0.91543 0.88544 0.92002 0.91177 0.92131 0.92123 0.92991 0.92039 0.93599 0.91734 0.94173 0.93084 0.92039 0.91892 0.92958 0.92218 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 8.93 36.00 0.32 -1.16 16 2 C -0.11 -1.39 5.09 -100.94 -0.51 -1.91 16 3 C -0.17 -2.02 8.75 -35.90 -0.31 -2.33 16 4 C -0.09 -0.92 5.49 -28.18 -0.15 -1.08 16 5 C -0.12 -1.40 5.65 -26.52 -0.15 -1.55 16 6 C -0.07 -1.03 2.60 -90.41 -0.24 -1.26 16 7 H 0.08 1.33 7.98 -51.93 -0.41 0.91 16 8 C -0.14 -1.91 7.85 37.15 0.29 -1.62 16 9 C -0.04 -0.53 2.34 -92.06 -0.22 -0.75 16 10 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 11 C 0.03 0.45 3.11 -3.82 -0.01 0.44 16 12 N -0.48 -9.51 5.84 -244.63 -1.43 -10.94 16 13 C 0.01 0.12 7.28 -7.55 -0.05 0.07 16 14 C 0.04 1.02 3.77 -91.23 -0.34 0.68 16 15 C -0.52 -14.04 8.82 -34.44 -0.30 -14.35 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.63 13.26 55.43 0.74 -24.89 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.00 -0.10 7.22 -7.54 -0.05 -0.15 16 24 H 0.05 0.58 7.56 -51.93 -0.39 0.18 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.81 7.31 -51.93 -0.38 0.43 16 27 H 0.10 1.02 7.57 -52.48 -0.40 0.63 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.73 6.92 -51.93 -0.36 0.37 16 30 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.65 5.73 -51.93 -0.30 0.36 16 33 H 0.06 0.90 6.36 -51.93 -0.33 0.57 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 1.05 6.14 -51.93 -0.32 0.73 16 36 H 0.04 0.70 6.03 -51.93 -0.31 0.38 16 37 H 0.05 1.18 7.35 -51.93 -0.38 0.80 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -27.51 318.49 -10.09 -37.61 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.34 Total: 0.59 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.84 Total: -23.22 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.69 Total: -35.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.51 -10.09 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.646 kcal (2) G-P(sol) polarization free energy of solvation -27.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds