Wall clock time and date at job start Mon Mar 30 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29444 * 117.96041 * 2 1 4 4 C 1.50063 * 124.07528 * 179.25024 * 3 2 1 5 5 C 1.53021 * 110.14908 * 17.13191 * 4 3 2 6 6 C 1.53394 * 108.43882 * 310.56495 * 5 4 3 7 7 H 1.09004 * 109.63913 * 187.11511 * 6 5 4 8 8 C 1.52992 * 109.64014 * 307.53502 * 6 5 4 9 9 C 1.50064 * 117.96341 * 179.73923 * 2 1 3 10 10 H 1.09001 * 109.36335 * 77.20412 * 9 2 1 11 11 C 1.53006 * 109.35990 * 317.61604 * 9 2 1 12 12 N 1.46893 * 109.47037 * 177.64296 * 11 9 2 13 13 C 1.47473 * 111.00321 * 262.59398 * 12 11 9 14 14 C 1.53518 * 87.93455 * 221.29963 * 13 12 11 15 15 C 1.50705 * 114.17146 * 139.66816 * 14 13 12 16 16 H 1.07999 * 119.99498 * 266.15903 * 15 14 13 17 17 C 1.37877 * 119.99736 * 86.16350 * 15 14 13 18 18 N 1.31513 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99703 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46853 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47096 * 119.99411 * 19 17 15 22 22 H 1.48498 * 109.46791 * 239.99942 * 19 17 15 23 23 C 1.47483 * 110.99744 * 166.61999 * 12 11 9 24 24 H 1.08994 * 109.47114 * 5.14950 * 1 2 3 25 25 H 1.09004 * 109.47356 * 125.15893 * 1 2 3 26 26 H 1.09004 * 109.46719 * 245.14948 * 1 2 3 27 27 H 1.08006 * 117.96172 * 359.23371 * 3 2 1 28 28 H 1.09007 * 109.36000 * 137.33948 * 4 3 2 29 29 H 1.09002 * 109.36023 * 257.06370 * 4 3 2 30 30 H 1.09002 * 109.63789 * 70.24883 * 5 4 3 31 31 H 1.09001 * 109.64180 * 190.87645 * 5 4 3 32 32 H 1.08998 * 109.47410 * 60.00089 * 8 6 5 33 33 H 1.09004 * 109.47240 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47829 * 299.99957 * 8 6 5 35 35 H 1.09001 * 109.46748 * 297.64562 * 11 9 2 36 36 H 1.08994 * 109.46573 * 57.64666 * 11 9 2 37 37 H 1.09003 * 113.47751 * 336.05994 * 13 12 11 38 38 H 1.08998 * 113.48183 * 106.53518 * 13 12 11 39 39 H 1.08999 * 114.16649 * 272.37509 * 14 13 12 40 40 H 0.96998 * 119.99931 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.47676 * 253.47075 * 23 12 11 42 42 H 1.09001 * 113.47705 * 23.94281 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6059 1.3032 0.0163 5 6 4.2810 -0.0082 -0.3911 6 6 3.6685 -1.1462 0.4351 7 1 4.2200 -2.0688 0.2534 8 6 3.7319 -0.7937 1.9225 9 6 2.2106 -1.3254 0.0060 10 1 2.1789 -1.7560 -0.9948 11 6 1.5067 -2.2690 0.9834 12 7 2.1590 -3.5847 0.9495 13 6 1.4301 -4.5134 0.0657 14 6 1.6579 -5.6067 1.1191 15 6 0.4719 -6.5108 1.3365 16 1 -0.2365 -6.2925 2.1219 17 6 0.2916 -7.6166 0.5329 18 7 1.1541 -7.8820 -0.4237 19 14 -1.1789 -8.7368 0.8021 20 1 -1.9928 -8.2222 1.9324 21 1 -2.0073 -8.7708 -0.4299 22 1 -0.7050 -10.1082 1.1180 23 6 1.7279 -4.4177 2.0876 24 1 -0.3633 1.0235 -0.0922 25 1 -0.3634 -0.5918 -0.8402 26 1 -0.3633 -0.4319 0.9326 27 1 1.5088 2.0379 -0.0128 28 1 3.8927 2.0894 -0.6822 29 1 3.9291 1.5768 1.0207 30 1 4.1118 -0.1933 -1.4519 31 1 5.3511 0.0537 -0.1930 32 1 3.1735 0.1250 2.1023 33 1 3.2965 -1.6042 2.5069 34 1 4.7713 -0.6508 2.2182 35 1 1.5675 -1.8591 1.9916 36 1 0.4605 -2.3746 0.6966 37 1 0.3804 -4.2516 -0.0682 38 1 1.9408 -4.7062 -0.8777 39 1 2.5982 -6.1462 1.0060 40 1 1.0274 -8.6602 -0.9887 41 1 2.4911 -4.5294 2.8577 42 1 0.7578 -4.1304 2.4932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:50 Heat of formation + Delta-G solvation = 13.059599 kcal Electronic energy + Delta-G solvation = -18908.670730 eV Core-core repulsion = 16274.360122 eV Total energy + Delta-G solvation = -2634.310608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22529 -39.78682 -34.87821 -34.32558 -33.45711 -30.24773 -28.32533 -27.50244 -26.79659 -26.43508 -24.51916 -21.97542 -21.44774 -20.37787 -18.61876 -17.82539 -16.73312 -16.59787 -16.46843 -15.89362 -15.77863 -15.32035 -14.75877 -14.35244 -13.99182 -13.82189 -13.71527 -13.51246 -13.25319 -13.19077 -12.94101 -12.79454 -12.73538 -12.54450 -12.34766 -12.15376 -11.87463 -11.63378 -11.29420 -11.18392 -10.98537 -10.86143 -10.76695 -10.50299 -9.67837 -9.50439 -8.15896 -6.27286 1.39828 1.40712 1.42427 1.54150 2.41727 3.13485 3.32270 3.82529 3.84814 3.86232 4.19640 4.29706 4.32793 4.36355 4.44656 4.54400 4.58773 4.63829 4.67345 4.71353 4.74490 4.80024 4.83419 4.88956 4.94864 5.00841 5.07016 5.15110 5.16595 5.17450 5.23381 5.27092 5.40006 5.51177 5.57114 5.61880 5.65178 5.84796 5.88625 6.17705 6.30038 6.43724 6.82376 7.41351 8.94172 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.038388 B = 0.004877 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.221050 B = 5739.696737 C = 5997.773264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 C -0.154 4.154 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.057 0.943 8 C -0.138 4.138 9 C -0.030 4.030 10 H 0.052 0.948 11 C 0.031 3.969 12 N -0.473 5.473 13 C 0.018 3.982 14 C 0.022 3.978 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.010 3.990 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 18.353 1.721 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 C -0.172 4.172 4 C -0.123 4.123 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.075 0.925 8 C -0.195 4.195 9 C -0.049 4.049 10 H 0.070 0.930 11 C -0.097 4.097 12 N -0.195 5.195 13 C -0.111 4.111 14 C 0.003 3.997 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.119 4.119 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.135 0.865 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.949 18.429 1.478 18.722 hybrid contribution -1.625 -1.197 -0.164 2.025 sum 1.323 17.232 1.314 17.333 Atomic orbital electron populations 1.20987 0.92455 1.02691 1.01646 1.20850 0.95951 0.94306 1.01913 1.22106 0.96869 0.96736 1.01525 1.20474 0.91978 0.97402 1.02416 1.21667 0.99915 0.94671 0.99018 1.20958 0.94287 0.98130 0.95992 0.92497 1.21814 1.01537 1.01072 0.95056 1.19755 0.95156 0.92278 0.97719 0.93011 1.22755 0.95717 0.91128 1.00145 1.68734 1.44794 1.00436 1.05520 1.23811 0.94957 0.94849 0.97531 1.20040 0.96066 0.91179 0.92431 1.21408 1.09173 1.09756 1.16455 0.92341 1.25831 0.98999 0.98859 0.94754 1.70104 1.37472 1.28331 1.20250 0.85512 0.79383 0.78615 0.78198 1.18789 1.20627 1.20484 1.23790 0.98402 0.94613 0.95046 0.90571 0.92787 0.92068 0.86539 0.89989 0.89929 0.92866 0.90805 0.91897 0.93813 0.92326 0.90536 0.94745 0.93547 0.93955 0.95247 0.92856 0.90974 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.93 71.24 0.64 -2.09 16 2 C -0.13 -3.17 5.09 -15.10 -0.08 -3.24 16 3 C -0.15 -3.15 8.75 27.04 0.24 -2.91 16 4 C -0.09 -1.56 5.49 29.66 0.16 -1.39 16 5 C -0.12 -2.51 5.65 30.73 0.17 -2.34 16 6 C -0.08 -2.03 2.60 -10.66 -0.03 -2.06 16 7 H 0.06 1.83 7.98 -2.39 -0.02 1.81 16 8 C -0.14 -3.38 7.85 71.98 0.57 -2.82 16 9 C -0.03 -0.90 2.34 -11.73 -0.03 -0.92 16 10 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 11 C 0.03 1.03 3.11 86.31 0.27 1.30 16 12 N -0.47 -19.05 5.84 -927.88 -5.42 -24.47 16 13 C 0.02 0.85 7.28 83.58 0.61 1.46 16 14 C 0.02 1.13 3.77 -11.19 -0.04 1.09 16 15 C -0.53 -29.35 8.82 25.60 0.23 -29.12 16 16 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.01 0.83 5.46 84.65 0.46 1.29 16 18 N -0.92 -54.74 13.26 21.45 0.28 -54.45 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.01 0.44 7.22 83.58 0.60 1.04 16 24 H 0.08 1.37 7.56 -2.39 -0.02 1.35 16 25 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.06 1.41 7.31 -2.38 -0.02 1.39 16 27 H 0.12 1.96 7.57 -2.91 -0.02 1.94 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.36 6.92 -2.39 -0.02 1.34 16 30 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.40 5.73 -2.39 -0.01 1.39 16 33 H 0.04 1.22 6.36 -2.39 -0.02 1.20 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 2.39 6.14 -2.39 -0.01 2.38 16 36 H 0.03 1.19 6.03 -2.39 -0.01 1.18 16 37 H 0.05 2.22 7.35 -2.39 -0.02 2.20 16 38 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.03 1.70 8.11 -2.39 -0.02 1.68 16 40 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.06 2.36 7.87 -2.39 -0.02 2.34 16 Total: -1.00 -59.72 318.49 1.62 -58.10 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.97 Total: 16.00 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.77 Total: -40.72 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -5.14 Total: -78.92 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -59.72 1.62 -58.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.155 kcal (2) G-P(sol) polarization free energy of solvation -59.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds