Wall clock time and date at job start Mon Mar 30 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29258 * 117.81825 * 2 1 4 4 C 1.50069 * 124.01756 * 180.60145 * 3 2 1 5 5 C 1.53026 * 110.14580 * 342.74061 * 4 3 2 6 6 C 1.53395 * 108.44018 * 49.43672 * 5 4 3 7 7 H 1.09000 * 109.81726 * 52.34799 * 6 5 4 8 8 C 1.52994 * 109.63987 * 172.88157 * 6 5 4 9 9 C 1.50065 * 117.96318 * 179.88142 * 2 1 3 10 10 H 1.09002 * 109.35883 * 282.91431 * 9 2 1 11 11 C 1.53002 * 109.35967 * 42.63987 * 9 2 1 12 12 N 1.46903 * 109.47118 * 186.89122 * 11 9 2 13 13 C 1.47472 * 111.00202 * 80.44029 * 12 11 9 14 14 C 1.53507 * 87.93311 * 138.70059 * 13 12 11 15 15 C 1.50703 * 114.17209 * 220.32585 * 14 13 12 16 16 H 1.08009 * 119.99906 * 93.84026 * 15 14 13 17 17 C 1.37873 * 120.00133 * 273.84277 * 15 14 13 18 18 N 1.31522 * 119.99892 * 179.97438 * 17 15 14 19 19 Si 1.86790 * 120.00054 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47450 * 90.00313 * 19 17 15 21 21 H 1.48506 * 109.47495 * 210.00296 * 19 17 15 22 22 H 1.48501 * 109.47322 * 330.00186 * 19 17 15 23 23 C 1.47479 * 110.99669 * 176.40987 * 12 11 9 24 24 H 1.09000 * 109.46810 * 264.73874 * 1 2 3 25 25 H 1.09000 * 109.46608 * 24.73877 * 1 2 3 26 26 H 1.09003 * 109.46813 * 144.74051 * 1 2 3 27 27 H 1.07997 * 118.01948 * 0.45294 * 3 2 1 28 28 H 1.08993 * 109.35860 * 222.53206 * 4 3 2 29 29 H 1.09004 * 109.35469 * 102.94654 * 4 3 2 30 30 H 1.08998 * 109.63976 * 289.74645 * 5 4 3 31 31 H 1.08999 * 109.64143 * 169.11986 * 5 4 3 32 32 H 1.09004 * 109.46901 * 178.94185 * 8 6 5 33 33 H 1.09001 * 109.47371 * 298.93737 * 8 6 5 34 34 H 1.08994 * 109.47517 * 58.94140 * 8 6 5 35 35 H 1.08996 * 109.47420 * 66.88325 * 11 9 2 36 36 H 1.09000 * 109.46801 * 306.88724 * 11 9 2 37 37 H 1.09000 * 113.47957 * 253.46918 * 13 12 11 38 38 H 1.09007 * 113.47777 * 23.93411 * 13 12 11 39 39 H 1.09000 * 114.34320 * 87.63706 * 14 13 12 40 40 H 0.96997 * 119.99460 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47967 * 336.06680 * 23 12 11 42 42 H 1.09009 * 113.47600 * 106.52637 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1102 1.1432 0.0000 4 6 3.6021 1.3053 -0.0131 5 6 4.2781 -0.0038 0.4005 6 6 3.6694 -1.1456 -0.4233 7 1 3.7136 -0.9000 -1.4844 8 6 4.4447 -2.4384 -0.1619 9 6 2.2107 -1.3254 0.0027 10 1 2.1771 -1.7503 1.0060 11 6 1.5106 -2.2734 -0.9731 12 7 2.0916 -3.6172 -0.8523 13 6 1.5300 -4.3334 0.3081 14 6 1.4705 -5.5924 -0.5682 15 6 0.2243 -6.4183 -0.3780 16 1 -0.6275 -6.2673 -1.0247 17 6 0.1715 -7.3666 0.6214 18 7 -0.9162 -8.0869 0.7876 19 14 1.6449 -7.6282 1.7394 20 1 1.5340 -6.7362 2.9215 21 1 1.6803 -9.0432 2.1887 22 1 2.8918 -7.3133 0.9969 23 6 1.3835 -4.5788 -1.7177 24 1 -0.3633 -0.0942 1.0234 25 1 -0.3632 0.9334 -0.4301 26 1 -0.3633 -0.8392 -0.5933 27 1 1.5038 2.0368 0.0075 28 1 3.8859 2.0942 0.6833 29 1 3.9271 1.5783 -1.0171 30 1 4.1065 -0.1855 1.4615 31 1 5.3486 0.0589 0.2049 32 1 3.9983 -3.2517 -0.7341 33 1 5.4831 -2.3072 -0.4663 34 1 4.4051 -2.6773 0.9008 35 1 1.6444 -1.9099 -1.9919 36 1 0.4469 -2.3151 -0.7391 37 1 2.2246 -4.4184 1.1438 38 1 0.5485 -3.9681 0.6105 39 1 2.3847 -6.1859 -0.5646 40 1 -0.9532 -8.7543 1.4905 41 1 0.3630 -4.2789 -1.9560 42 1 1.9541 -4.8717 -2.5991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:53 Heat of formation + Delta-G solvation = 34.633939 kcal Electronic energy + Delta-G solvation = -19061.149361 eV Core-core repulsion = 16427.774286 eV Total energy + Delta-G solvation = -2633.375074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95397 -38.34296 -33.56290 -33.11848 -32.14140 -29.31252 -27.24204 -26.29220 -25.00663 -24.87746 -22.61606 -20.71707 -20.41466 -18.67442 -17.66829 -16.99955 -15.48337 -15.26792 -14.90451 -14.25474 -13.95607 -13.84730 -13.63657 -13.32200 -12.88113 -12.60336 -12.39624 -12.26038 -12.18311 -11.84710 -11.62926 -11.46035 -11.33455 -11.15239 -10.99243 -10.54346 -10.36638 -10.19485 -9.99700 -9.90785 -9.57851 -9.42551 -9.11820 -8.66388 -8.56363 -7.93838 -6.10671 -4.11119 2.30352 3.29654 3.37400 3.41344 4.41270 4.59123 4.77197 4.87660 4.93986 5.15514 5.19157 5.34024 5.38976 5.44756 5.59210 5.64383 5.69847 5.73349 5.79988 5.88389 5.92554 6.00964 6.04683 6.09801 6.12719 6.12795 6.23268 6.27136 6.35925 6.41339 6.50118 6.52630 6.68771 6.72649 6.78302 6.95162 7.08936 7.14067 7.40890 7.69366 7.87587 8.48789 8.92154 9.52116 11.01940 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.005806 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.855897 B = 4821.826614 C = 5163.064680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 C -0.170 4.170 4 C -0.086 4.086 5 C -0.118 4.118 6 C -0.071 4.071 7 H 0.065 0.935 8 C -0.162 4.162 9 C -0.041 4.041 10 H 0.079 0.921 11 C 0.027 3.973 12 N -0.475 5.475 13 C -0.010 4.010 14 C -0.006 4.006 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.900 5.900 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.260 1.260 23 C 0.007 3.993 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.264 0.736 41 H 0.060 0.940 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 16.507 -1.330 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 C -0.189 4.189 4 C -0.123 4.123 5 C -0.156 4.156 6 C -0.089 4.089 7 H 0.083 0.917 8 C -0.219 4.219 9 C -0.059 4.059 10 H 0.097 0.903 11 C -0.102 4.102 12 N -0.196 5.196 13 C -0.139 4.139 14 C -0.026 4.026 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.128 4.128 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.122 4.122 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.365 16.500 -1.296 18.545 hybrid contribution -0.354 0.025 0.870 0.940 sum 8.011 16.525 -0.425 18.370 Atomic orbital electron populations 1.21106 0.92902 1.02402 1.02267 1.20900 0.95638 0.94880 0.99487 1.21784 0.96061 0.96842 1.04166 1.20390 0.92869 0.97886 1.01124 1.21740 0.99125 0.94551 1.00136 1.21037 0.93704 0.95167 0.99011 0.91685 1.22209 0.98225 0.99220 1.02229 1.19950 0.94265 0.91772 0.99923 0.90295 1.22737 0.96813 0.91729 0.98880 1.68784 1.44491 0.99726 1.06633 1.24274 0.97382 0.97556 0.94657 1.20663 0.98450 0.91919 0.91538 1.20934 0.98898 1.18223 1.16557 0.90857 1.25003 0.95742 0.94999 0.97086 1.69916 1.27619 1.23358 1.32911 0.86829 0.84157 0.77301 0.81333 1.20232 1.21515 1.18497 1.23787 0.96592 0.94123 0.97690 0.91696 0.92361 0.91072 0.88387 0.91806 0.91432 0.92145 0.92089 0.87259 0.94603 0.93957 0.91608 0.93573 0.92410 0.91799 0.91986 0.92619 0.92222 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.68 36.01 0.35 -1.20 16 2 C -0.11 -1.39 5.47 -100.89 -0.55 -1.94 16 3 C -0.17 -1.98 9.36 -35.85 -0.34 -2.32 16 4 C -0.09 -0.91 6.12 -28.17 -0.17 -1.08 16 5 C -0.12 -1.37 5.31 -26.51 -0.14 -1.51 16 6 C -0.07 -0.94 2.20 -90.41 -0.20 -1.14 16 7 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 8 C -0.16 -2.33 8.74 37.15 0.32 -2.01 16 9 C -0.04 -0.58 2.01 -92.06 -0.19 -0.76 16 10 H 0.08 1.25 7.74 -51.93 -0.40 0.85 16 11 C 0.03 0.42 3.70 -3.82 -0.01 0.41 16 12 N -0.47 -8.50 3.08 -244.68 -0.75 -9.25 16 13 C -0.01 -0.20 6.34 -7.56 -0.05 -0.25 16 14 C -0.01 -0.15 2.99 -91.25 -0.27 -0.42 16 15 C -0.51 -13.89 9.37 -34.44 -0.32 -14.21 16 16 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 19 Si 0.88 21.26 27.41 -169.99 -4.66 16.60 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -6.07 6.22 56.52 0.35 -5.72 16 23 C 0.01 0.13 7.28 -7.56 -0.06 0.07 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 26 H 0.07 0.89 5.68 -51.93 -0.30 0.59 16 27 H 0.10 1.02 7.73 -52.49 -0.41 0.62 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.79 5.24 -51.93 -0.27 1.52 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.05 0.75 5.42 -51.93 -0.28 0.47 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.36 7.55 -51.92 -0.39 0.96 16 39 H 0.06 1.46 6.50 -51.93 -0.34 1.12 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.06 1.18 7.83 -51.93 -0.41 0.78 16 42 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -27.98 316.17 -9.04 -37.02 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.45 Total: 1.56 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -1.72 Total: -24.37 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.02 Total: -35.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.66 Total: 16.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.98 -9.04 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.654 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds