Wall clock time and date at job start Mon Mar 30 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29258 * 117.81825 * 2 1 4 4 C 1.50069 * 124.01756 * 180.60145 * 3 2 1 5 5 C 1.53026 * 110.14580 * 342.74061 * 4 3 2 6 6 C 1.53395 * 108.44018 * 49.43672 * 5 4 3 7 7 H 1.09000 * 109.81726 * 52.34799 * 6 5 4 8 8 C 1.52994 * 109.63987 * 172.88157 * 6 5 4 9 9 C 1.50065 * 117.96318 * 179.88142 * 2 1 3 10 10 H 1.09002 * 109.35883 * 282.91431 * 9 2 1 11 11 C 1.53002 * 109.35967 * 42.63987 * 9 2 1 12 12 N 1.46903 * 109.47118 * 186.89122 * 11 9 2 13 13 C 1.47472 * 111.00202 * 80.44029 * 12 11 9 14 14 C 1.53507 * 87.93311 * 138.70059 * 13 12 11 15 15 C 1.50703 * 114.17209 * 220.32585 * 14 13 12 16 16 H 1.08009 * 119.99906 * 93.84026 * 15 14 13 17 17 C 1.37873 * 120.00133 * 273.84277 * 15 14 13 18 18 N 1.31522 * 119.99892 * 179.97438 * 17 15 14 19 19 Si 1.86790 * 120.00054 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47450 * 90.00313 * 19 17 15 21 21 H 1.48506 * 109.47495 * 210.00296 * 19 17 15 22 22 H 1.48501 * 109.47322 * 330.00186 * 19 17 15 23 23 C 1.47479 * 110.99669 * 176.40987 * 12 11 9 24 24 H 1.09000 * 109.46810 * 264.73874 * 1 2 3 25 25 H 1.09000 * 109.46608 * 24.73877 * 1 2 3 26 26 H 1.09003 * 109.46813 * 144.74051 * 1 2 3 27 27 H 1.07997 * 118.01948 * 0.45294 * 3 2 1 28 28 H 1.08993 * 109.35860 * 222.53206 * 4 3 2 29 29 H 1.09004 * 109.35469 * 102.94654 * 4 3 2 30 30 H 1.08998 * 109.63976 * 289.74645 * 5 4 3 31 31 H 1.08999 * 109.64143 * 169.11986 * 5 4 3 32 32 H 1.09004 * 109.46901 * 178.94185 * 8 6 5 33 33 H 1.09001 * 109.47371 * 298.93737 * 8 6 5 34 34 H 1.08994 * 109.47517 * 58.94140 * 8 6 5 35 35 H 1.08996 * 109.47420 * 66.88325 * 11 9 2 36 36 H 1.09000 * 109.46801 * 306.88724 * 11 9 2 37 37 H 1.09000 * 113.47957 * 253.46918 * 13 12 11 38 38 H 1.09007 * 113.47777 * 23.93411 * 13 12 11 39 39 H 1.09000 * 114.34320 * 87.63706 * 14 13 12 40 40 H 0.96997 * 119.99460 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47967 * 336.06680 * 23 12 11 42 42 H 1.09009 * 113.47600 * 106.52637 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1102 1.1432 0.0000 4 6 3.6021 1.3053 -0.0131 5 6 4.2781 -0.0038 0.4005 6 6 3.6694 -1.1456 -0.4233 7 1 3.7136 -0.9000 -1.4844 8 6 4.4447 -2.4384 -0.1619 9 6 2.2107 -1.3254 0.0027 10 1 2.1771 -1.7503 1.0060 11 6 1.5106 -2.2734 -0.9731 12 7 2.0916 -3.6172 -0.8523 13 6 1.5300 -4.3334 0.3081 14 6 1.4705 -5.5924 -0.5682 15 6 0.2243 -6.4183 -0.3780 16 1 -0.6275 -6.2673 -1.0247 17 6 0.1715 -7.3666 0.6214 18 7 -0.9162 -8.0869 0.7876 19 14 1.6449 -7.6282 1.7394 20 1 1.5340 -6.7362 2.9215 21 1 1.6803 -9.0432 2.1887 22 1 2.8918 -7.3133 0.9969 23 6 1.3835 -4.5788 -1.7177 24 1 -0.3633 -0.0942 1.0234 25 1 -0.3632 0.9334 -0.4301 26 1 -0.3633 -0.8392 -0.5933 27 1 1.5038 2.0368 0.0075 28 1 3.8859 2.0942 0.6833 29 1 3.9271 1.5783 -1.0171 30 1 4.1065 -0.1855 1.4615 31 1 5.3486 0.0589 0.2049 32 1 3.9983 -3.2517 -0.7341 33 1 5.4831 -2.3072 -0.4663 34 1 4.4051 -2.6773 0.9008 35 1 1.6444 -1.9099 -1.9919 36 1 0.4469 -2.3151 -0.7391 37 1 2.2246 -4.4184 1.1438 38 1 0.5485 -3.9681 0.6105 39 1 2.3847 -6.1859 -0.5646 40 1 -0.9532 -8.7543 1.4905 41 1 0.3630 -4.2789 -1.9560 42 1 1.9541 -4.8717 -2.5991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:53 Heat of formation + Delta-G solvation = 20.582378 kcal Electronic energy + Delta-G solvation = -19061.758682 eV Core-core repulsion = 16427.774286 eV Total energy + Delta-G solvation = -2633.984396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30287 -39.61647 -34.89352 -34.52321 -33.65951 -30.76180 -28.66988 -27.24519 -26.64980 -26.39859 -23.95708 -21.94637 -21.48680 -20.42915 -19.14464 -18.59021 -16.90143 -16.67563 -16.23849 -15.54158 -15.45932 -15.22608 -14.74525 -14.59709 -14.40503 -14.01551 -13.70673 -13.39195 -13.29316 -13.16518 -13.09445 -12.92692 -12.69944 -12.43028 -12.14801 -11.98769 -11.89369 -11.66139 -11.43045 -11.33339 -11.11178 -10.90851 -10.89383 -10.65412 -9.61270 -9.43901 -8.29248 -6.34002 1.36929 1.37208 1.38978 1.50004 2.36576 3.03548 3.23997 3.75250 3.80441 3.84765 4.11215 4.22698 4.27080 4.35267 4.37425 4.46958 4.56056 4.62551 4.68614 4.71090 4.74648 4.78885 4.83134 4.89591 4.92646 5.00390 5.03004 5.08893 5.13587 5.15443 5.18942 5.27463 5.41055 5.46764 5.50174 5.63105 5.64756 5.83058 5.93228 6.14628 6.29277 6.32087 6.71822 7.32660 8.87003 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.005806 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.855897 B = 4821.826614 C = 5163.064680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C -0.157 4.157 4 C -0.087 4.087 5 C -0.115 4.115 6 C -0.069 4.069 7 H 0.066 0.934 8 C -0.159 4.159 9 C -0.035 4.035 10 H 0.059 0.941 11 C 0.029 3.971 12 N -0.457 5.457 13 C 0.002 3.998 14 C -0.019 4.019 15 C -0.511 4.511 16 H 0.033 0.967 17 C 0.017 3.983 18 N -0.950 5.950 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.242 1.242 23 C 0.014 3.986 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.266 0.734 41 H 0.052 0.948 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.983 18.797 -1.184 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.132 4.132 3 C -0.175 4.175 4 C -0.124 4.124 5 C -0.152 4.152 6 C -0.087 4.087 7 H 0.084 0.916 8 C -0.216 4.216 9 C -0.053 4.053 10 H 0.077 0.923 11 C -0.100 4.100 12 N -0.179 5.179 13 C -0.128 4.128 14 C -0.038 4.038 15 C -0.549 4.549 16 H 0.052 0.948 17 C -0.180 4.180 18 N -0.590 5.590 19 Si 0.764 3.236 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.166 1.166 23 C -0.115 4.115 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.613 18.812 -1.165 21.631 hybrid contribution -1.099 -0.629 0.746 1.470 sum 9.514 18.183 -0.419 20.526 Atomic orbital electron populations 1.21083 0.92620 1.02750 1.02024 1.20850 0.95955 0.94523 1.01915 1.22060 0.96991 0.96857 1.01609 1.20461 0.91903 0.97724 1.02293 1.21708 0.99934 0.94325 0.99283 1.21017 0.92922 0.95439 0.99359 0.91578 1.22137 0.99099 0.99107 1.01256 1.19849 0.95070 0.92195 0.98218 0.92256 1.22775 0.96529 0.90595 1.00060 1.68839 1.43812 1.00559 1.04646 1.24004 0.97101 0.96399 0.95265 1.20638 0.96167 0.92444 0.94598 1.21165 0.99431 1.18766 1.15506 0.94845 1.25854 0.98591 0.94795 0.98799 1.70059 1.30083 1.24625 1.34205 0.85816 0.81073 0.77265 0.79486 1.19321 1.21378 1.16550 1.23671 0.96830 0.93446 0.97552 0.91986 0.90693 0.92340 0.86773 0.90001 0.90235 0.92888 0.90760 0.89191 0.93242 0.94814 0.90585 0.94324 0.91836 0.93082 0.91938 0.92511 0.92945 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.68 71.24 0.69 -2.19 16 2 C -0.13 -3.12 5.47 -14.92 -0.08 -3.20 16 3 C -0.16 -3.16 9.36 27.22 0.25 -2.90 16 4 C -0.09 -1.51 6.12 29.66 0.18 -1.33 16 5 C -0.11 -2.33 5.31 30.74 0.16 -2.16 16 6 C -0.07 -1.68 2.20 -10.65 -0.02 -1.71 16 7 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 8 C -0.16 -4.26 8.74 71.98 0.63 -3.63 16 9 C -0.03 -0.94 2.01 -11.73 -0.02 -0.97 16 10 H 0.06 1.83 7.74 -2.39 -0.02 1.81 16 11 C 0.03 0.87 3.70 86.30 0.32 1.19 16 12 N -0.46 -15.91 3.08 -928.02 -2.86 -18.77 16 13 C 0.00 0.07 6.34 83.57 0.53 0.60 16 14 C -0.02 -0.88 2.99 -11.20 -0.03 -0.91 16 15 C -0.51 -28.68 9.37 25.60 0.24 -28.44 16 16 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 17 C 0.02 0.99 5.47 84.65 0.46 1.45 16 18 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 19 Si 0.94 43.85 27.41 68.60 1.88 45.73 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.24 -10.49 6.22 99.48 0.62 -9.87 16 23 C 0.01 0.53 7.28 83.57 0.61 1.14 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.39 7.79 -2.39 -0.02 1.37 16 26 H 0.06 1.44 5.68 -2.39 -0.01 1.42 16 27 H 0.11 1.95 7.73 -2.91 -0.02 1.92 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.79 5.24 -2.38 -0.01 2.77 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 36 H 0.04 1.25 5.42 -2.39 -0.01 1.23 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 2.19 7.55 -2.38 -0.02 2.18 16 39 H 0.06 2.87 6.50 -2.39 -0.02 2.85 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 41 H 0.05 2.10 7.83 -2.38 -0.02 2.08 16 42 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -60.90 316.17 4.11 -56.79 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.87 Total: 17.94 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.92 Total: -43.07 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -2.56 Total: -77.40 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -60.90 4.11 -56.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.374 kcal (2) G-P(sol) polarization free energy of solvation -60.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds