Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 N 1.46910 * 109.46893 * 240.00067 * 2 1 3 5 5 C 1.46895 * 110.99854 * 86.77439 * 4 2 1 6 6 C 1.52996 * 109.47236 * 175.56916 * 5 4 2 7 7 C 1.50705 * 115.55033 * 39.57011 * 6 5 4 8 8 H 1.08005 * 119.99663 * 268.18515 * 7 6 5 9 9 C 1.37874 * 119.99964 * 88.17924 * 7 6 5 10 10 N 1.31515 * 119.99671 * 179.42438 * 9 7 6 11 11 Si 1.86793 * 120.00308 * 359.42560 * 9 7 6 12 12 H 1.48507 * 109.47333 * 91.64707 * 11 9 7 13 13 H 1.48494 * 109.47421 * 211.64794 * 11 9 7 14 14 H 1.48498 * 109.47008 * 331.65183 * 11 9 7 15 15 C 1.52998 * 117.49817 * 253.86543 * 6 5 4 16 16 C 1.52998 * 117.50259 * 185.24155 * 6 5 4 17 17 C 1.53005 * 109.47548 * 120.00139 * 2 1 3 18 18 H 1.09000 * 115.55048 * 154.32975 * 17 2 1 19 19 C 1.52998 * 117.49607 * 8.62015 * 17 2 1 20 20 C 1.52998 * 60.00051 * 252.51153 * 19 17 2 21 21 H 1.09000 * 117.49850 * 107.48691 * 20 19 17 22 22 C 1.52997 * 117.52032 * 252.52244 * 20 19 17 23 23 C 1.53002 * 117.50012 * 197.25196 * 22 20 19 24 24 C 1.52991 * 117.50187 * 128.62708 * 22 20 19 25 25 H 1.08999 * 109.46822 * 174.81048 * 1 2 3 26 26 H 1.09005 * 109.46568 * 294.80074 * 1 2 3 27 27 H 1.08991 * 109.47404 * 54.80516 * 1 2 3 28 28 H 1.00900 * 110.99463 * 210.72662 * 4 2 1 29 29 H 1.09008 * 109.47012 * 295.56578 * 5 4 2 30 30 H 1.08996 * 109.47439 * 55.56742 * 5 4 2 31 31 H 0.97008 * 119.99696 * 180.02562 * 10 9 7 32 32 H 1.08996 * 117.50384 * 359.97438 * 15 6 5 33 33 H 1.09003 * 117.49838 * 145.01911 * 15 6 5 34 34 H 1.09003 * 117.49842 * 214.98045 * 16 6 5 35 35 H 1.09000 * 117.49673 * 359.97438 * 16 6 5 36 36 H 1.09005 * 117.50167 * 359.97438 * 19 17 2 37 37 H 1.09002 * 117.49976 * 145.02184 * 19 17 2 38 38 H 1.08999 * 115.54392 * 342.95425 * 22 20 19 39 39 H 1.09003 * 117.49451 * 359.97438 * 23 22 20 40 40 H 1.09000 * 117.49985 * 145.01688 * 23 22 20 41 41 H 1.09000 * 117.50138 * 214.97677 * 24 22 20 42 42 H 1.09004 * 117.50135 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.1223 0.2323 -2.3362 6 6 2.7377 -0.4964 -3.5325 7 6 2.2797 -1.9180 -3.7335 8 1 2.8316 -2.7315 -3.2862 9 6 1.1561 -2.1801 -4.4884 10 7 0.7630 -3.4214 -4.6732 11 14 0.1923 -0.7721 -5.2486 12 1 0.7029 -0.5048 -6.6173 13 1 -1.2452 -1.1376 -5.3192 14 1 0.3532 0.4454 -4.4138 15 6 4.1865 -0.1627 -3.8940 16 6 3.0431 0.3308 -4.7828 17 6 2.0401 -0.7213 1.2492 18 1 3.0325 -1.1641 1.1641 19 6 1.0106 -1.4541 2.1117 20 6 1.6359 -0.1496 2.6096 21 1 1.0066 0.7404 2.6146 22 6 2.6556 -0.2431 3.7464 23 6 2.9771 1.0405 4.5144 24 6 4.0038 0.4514 3.5450 25 1 -0.3633 -1.0235 -0.0930 26 1 -0.3633 0.4311 0.9330 27 1 -0.3634 0.5922 -0.8397 28 1 2.9036 -1.1448 -1.0203 29 1 1.1286 0.5927 -2.6023 30 1 2.7537 1.0771 -2.0614 31 1 -0.0274 -3.6058 -5.2046 32 1 4.7011 0.5762 -3.2798 33 1 4.8087 -0.9715 -4.2772 34 1 2.9131 -0.1533 -5.7508 35 1 2.8052 1.3941 -4.7533 36 1 -0.0302 -1.4221 1.7894 37 1 1.3255 -2.3795 2.5941 38 1 2.6496 -1.1776 4.3074 39 1 2.4624 1.9517 4.2095 40 1 3.1827 0.9507 5.5811 41 1 4.8849 -0.0259 3.9739 42 1 4.1646 0.9747 2.6024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598976062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = 74.531179 kcal Electronic energy + Delta-G solvation = -18482.246603 eV Core-core repulsion = 15850.601603 eV Total energy + Delta-G solvation = -2631.645000 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.13701 -37.36384 -36.13880 -33.61816 -31.89078 -29.21892 -26.03043 -25.01631 -23.69137 -22.84662 -22.40911 -21.59181 -19.98583 -19.28778 -18.63242 -16.28618 -15.92994 -15.61506 -15.01713 -14.61040 -14.38222 -13.82238 -13.56135 -13.08955 -12.63432 -12.51086 -12.26931 -11.88393 -11.80202 -11.55293 -11.41054 -11.18843 -11.00842 -10.83715 -10.65097 -10.59434 -10.39296 -10.28808 -10.00690 -9.72397 -9.48571 -9.38935 -8.96831 -8.39118 -8.36061 -7.48026 -5.92585 -3.91009 3.39252 3.48241 3.52390 3.53330 4.00249 4.44693 4.57902 4.75437 4.84018 4.86677 5.02620 5.05527 5.18692 5.30788 5.37656 5.46843 5.51042 5.51441 5.68617 5.76654 5.81068 5.96052 5.99446 6.00757 6.05093 6.08402 6.11413 6.24933 6.26736 6.29136 6.39548 6.42245 6.50042 6.65173 6.71561 6.79005 7.10987 7.19404 7.83564 8.00406 8.25740 8.67320 9.09943 9.72114 11.20361 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.005362 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.223198 B = 5220.674174 C = 5594.032994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.112 3.888 3 H 0.034 0.966 4 N -0.650 5.650 5 C 0.098 3.902 6 C 0.003 3.997 7 C -0.455 4.455 8 H 0.076 0.924 9 C 0.079 3.921 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.285 1.285 13 H -0.298 1.298 14 H -0.261 1.261 15 C -0.187 4.187 16 C -0.203 4.203 17 C -0.136 4.136 18 H 0.104 0.896 19 C -0.165 4.165 20 C -0.128 4.128 21 H 0.102 0.898 22 C -0.120 4.120 23 C -0.179 4.179 24 C -0.178 4.178 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.340 0.660 29 H 0.062 0.938 30 H 0.002 0.998 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 8.749 14.624 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.002 3.998 3 H 0.051 0.949 4 N -0.281 5.281 5 C -0.031 4.031 6 C 0.002 3.998 7 C -0.493 4.493 8 H 0.094 0.906 9 C -0.122 4.122 10 N -0.543 5.543 11 Si 0.710 3.290 12 H -0.211 1.211 13 H -0.225 1.225 14 H -0.185 1.185 15 C -0.224 4.224 16 C -0.240 4.240 17 C -0.154 4.154 18 H 0.122 0.878 19 C -0.202 4.202 20 C -0.147 4.147 21 H 0.120 0.880 22 C -0.138 4.138 23 C -0.216 4.216 24 C -0.215 4.215 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.925 8.398 14.352 16.739 hybrid contribution 0.196 1.263 -0.310 1.315 sum 2.121 9.661 14.042 17.175 Atomic orbital electron populations 1.21897 0.95271 1.02739 0.99900 1.21026 0.95558 0.94594 0.88635 0.94854 1.60301 1.34858 1.30484 1.02463 1.21722 0.98993 0.91280 0.91107 1.19537 0.93126 0.96165 0.91015 1.20016 1.10637 0.88054 1.30557 0.90607 1.24854 0.96566 0.94953 0.95847 1.69895 1.25329 1.18514 1.40550 0.86871 0.78650 0.83926 0.79553 1.21145 1.22513 1.18548 1.22893 0.92731 1.02301 1.04491 1.22929 1.05792 0.98134 0.97174 1.22575 0.99541 1.02885 0.90431 0.87836 1.23183 0.99327 0.94763 1.02905 1.21855 1.00754 0.98293 0.93755 0.87978 1.21749 0.96364 0.96477 0.99197 1.22958 1.03923 0.97312 0.97453 1.22951 0.92913 1.04325 1.01276 0.91219 0.93492 0.93159 0.84076 0.91953 0.98046 0.92974 0.91432 0.89632 0.89476 0.91279 0.87915 0.89171 0.87891 0.88932 0.89086 0.89051 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.03 37.16 0.30 -1.89 16 2 C 0.11 1.78 3.02 -67.70 -0.20 1.57 16 3 H 0.03 0.53 7.70 -51.93 -0.40 0.13 16 4 N -0.65 -12.69 5.66 -106.72 -0.60 -13.29 16 5 C 0.10 2.04 5.46 -3.83 -0.02 2.02 16 6 C 0.00 0.06 1.10 -155.66 -0.17 -0.11 16 7 C -0.45 -12.55 8.75 -34.44 -0.30 -12.85 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 10 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 11 Si 0.88 22.30 25.02 -169.99 -4.25 18.05 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 14 H -0.26 -6.27 5.39 56.52 0.30 -5.97 16 15 C -0.19 -3.81 9.88 -26.73 -0.26 -4.07 16 16 C -0.20 -4.37 7.51 -26.73 -0.20 -4.57 16 17 C -0.14 -1.86 5.45 -90.62 -0.49 -2.35 16 18 H 0.10 1.45 7.84 -51.93 -0.41 1.04 16 19 C -0.17 -2.08 9.29 -26.73 -0.25 -2.32 16 20 C -0.13 -1.48 5.21 -90.62 -0.47 -1.95 16 21 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 22 C -0.12 -1.23 5.87 -90.62 -0.53 -1.77 16 23 C -0.18 -1.63 10.25 -26.73 -0.27 -1.91 16 24 C -0.18 -1.75 10.17 -26.74 -0.27 -2.02 16 25 H 0.07 1.18 7.33 -51.93 -0.38 0.80 16 26 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 27 H 0.05 0.83 7.80 -51.93 -0.41 0.42 16 28 H 0.34 6.54 8.08 -39.29 -0.32 6.22 16 29 H 0.06 1.38 6.17 -51.92 -0.32 1.06 16 30 H 0.00 0.03 7.75 -51.93 -0.40 -0.37 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.09 1.99 7.09 -51.93 -0.37 1.62 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 1.31 5.88 -51.93 -0.31 1.01 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -29.41 329.22 -9.88 -39.29 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.50 Total: 8.17 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -3.25 Total: -30.05 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.17 Total: -40.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.25 Total: 18.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.41 -9.88 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598976062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.820 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds