Wall clock time and date at job start Mon Mar 30 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 N 1.46910 * 109.46893 * 240.00067 * 2 1 3 5 5 C 1.46895 * 110.99854 * 86.77439 * 4 2 1 6 6 C 1.52996 * 109.47236 * 175.56916 * 5 4 2 7 7 C 1.50705 * 115.55033 * 39.57011 * 6 5 4 8 8 H 1.08005 * 119.99663 * 268.18515 * 7 6 5 9 9 C 1.37874 * 119.99964 * 88.17924 * 7 6 5 10 10 N 1.31515 * 119.99671 * 179.42438 * 9 7 6 11 11 Si 1.86793 * 120.00308 * 359.42560 * 9 7 6 12 12 H 1.48507 * 109.47333 * 91.64707 * 11 9 7 13 13 H 1.48494 * 109.47421 * 211.64794 * 11 9 7 14 14 H 1.48498 * 109.47008 * 331.65183 * 11 9 7 15 15 C 1.52998 * 117.49817 * 253.86543 * 6 5 4 16 16 C 1.52998 * 117.50259 * 185.24155 * 6 5 4 17 17 C 1.53005 * 109.47548 * 120.00139 * 2 1 3 18 18 H 1.09000 * 115.55048 * 154.32975 * 17 2 1 19 19 C 1.52998 * 117.49607 * 8.62015 * 17 2 1 20 20 C 1.52998 * 60.00051 * 252.51153 * 19 17 2 21 21 H 1.09000 * 117.49850 * 107.48691 * 20 19 17 22 22 C 1.52997 * 117.52032 * 252.52244 * 20 19 17 23 23 C 1.53002 * 117.50012 * 197.25196 * 22 20 19 24 24 C 1.52991 * 117.50187 * 128.62708 * 22 20 19 25 25 H 1.08999 * 109.46822 * 174.81048 * 1 2 3 26 26 H 1.09005 * 109.46568 * 294.80074 * 1 2 3 27 27 H 1.08991 * 109.47404 * 54.80516 * 1 2 3 28 28 H 1.00900 * 110.99463 * 210.72662 * 4 2 1 29 29 H 1.09008 * 109.47012 * 295.56578 * 5 4 2 30 30 H 1.08996 * 109.47439 * 55.56742 * 5 4 2 31 31 H 0.97008 * 119.99696 * 180.02562 * 10 9 7 32 32 H 1.08996 * 117.50384 * 359.97438 * 15 6 5 33 33 H 1.09003 * 117.49838 * 145.01911 * 15 6 5 34 34 H 1.09003 * 117.49842 * 214.98045 * 16 6 5 35 35 H 1.09000 * 117.49673 * 359.97438 * 16 6 5 36 36 H 1.09005 * 117.50167 * 359.97438 * 19 17 2 37 37 H 1.09002 * 117.49976 * 145.02184 * 19 17 2 38 38 H 1.08999 * 115.54392 * 342.95425 * 22 20 19 39 39 H 1.09003 * 117.49451 * 359.97438 * 23 22 20 40 40 H 1.09000 * 117.49985 * 145.01688 * 23 22 20 41 41 H 1.09000 * 117.50138 * 214.97677 * 24 22 20 42 42 H 1.09004 * 117.50135 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.1223 0.2323 -2.3362 6 6 2.7377 -0.4964 -3.5325 7 6 2.2797 -1.9180 -3.7335 8 1 2.8316 -2.7315 -3.2862 9 6 1.1561 -2.1801 -4.4884 10 7 0.7630 -3.4214 -4.6732 11 14 0.1923 -0.7721 -5.2486 12 1 0.7029 -0.5048 -6.6173 13 1 -1.2452 -1.1376 -5.3192 14 1 0.3532 0.4454 -4.4138 15 6 4.1865 -0.1627 -3.8940 16 6 3.0431 0.3308 -4.7828 17 6 2.0401 -0.7213 1.2492 18 1 3.0325 -1.1641 1.1641 19 6 1.0106 -1.4541 2.1117 20 6 1.6359 -0.1496 2.6096 21 1 1.0066 0.7404 2.6146 22 6 2.6556 -0.2431 3.7464 23 6 2.9771 1.0405 4.5144 24 6 4.0038 0.4514 3.5450 25 1 -0.3633 -1.0235 -0.0930 26 1 -0.3633 0.4311 0.9330 27 1 -0.3634 0.5922 -0.8397 28 1 2.9036 -1.1448 -1.0203 29 1 1.1286 0.5927 -2.6023 30 1 2.7537 1.0771 -2.0614 31 1 -0.0274 -3.6058 -5.2046 32 1 4.7011 0.5762 -3.2798 33 1 4.8087 -0.9715 -4.2772 34 1 2.9131 -0.1533 -5.7508 35 1 2.8052 1.3941 -4.7533 36 1 -0.0302 -1.4221 1.7894 37 1 1.3255 -2.3795 2.5941 38 1 2.6496 -1.1776 4.3074 39 1 2.4624 1.9517 4.2095 40 1 3.1827 0.9507 5.5811 41 1 4.8849 -0.0259 3.9739 42 1 4.1646 0.9747 2.6024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598976062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:08 Heat of formation + Delta-G solvation = 58.113967 kcal Electronic energy + Delta-G solvation = -18482.958507 eV Core-core repulsion = 15850.601603 eV Total energy + Delta-G solvation = -2632.356904 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.19191 -38.93903 -37.22597 -34.90086 -34.07168 -30.55418 -27.86752 -26.70260 -24.66718 -24.07689 -23.28223 -23.15532 -20.94440 -20.89852 -20.05618 -18.18429 -17.19112 -16.76571 -16.47270 -16.06946 -15.70635 -15.25618 -14.91185 -14.67976 -14.33638 -14.13355 -13.77225 -13.21332 -13.01546 -12.82186 -12.66218 -12.42945 -12.32553 -12.17932 -12.09912 -11.89523 -11.78335 -11.62955 -11.47184 -11.32651 -10.89992 -10.69247 -10.53469 -10.33876 -10.17346 -8.94723 -8.15560 -6.16407 1.37416 1.40937 1.52302 2.46142 2.63411 3.11088 3.16812 3.21670 3.47099 3.72440 3.87912 4.03211 4.14139 4.21662 4.22913 4.26611 4.39687 4.40851 4.46176 4.55303 4.59786 4.64176 4.77175 4.82282 4.83445 4.86444 4.94129 5.01587 5.05259 5.11078 5.14532 5.27273 5.29206 5.30846 5.35249 5.41721 5.48179 5.53793 5.81985 6.37977 6.54509 6.75770 6.88475 7.49809 9.01276 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.005362 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.223198 B = 5220.674174 C = 5594.032994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.115 3.885 3 H 0.042 0.958 4 N -0.673 5.673 5 C 0.108 3.892 6 C -0.026 4.026 7 C -0.442 4.442 8 H 0.031 0.969 9 C 0.020 3.980 10 N -0.957 5.957 11 Si 0.937 3.063 12 H -0.277 1.277 13 H -0.306 1.306 14 H -0.236 1.236 15 C -0.166 4.166 16 C -0.199 4.199 17 C -0.149 4.149 18 H 0.097 0.903 19 C -0.171 4.171 20 C -0.104 4.104 21 H 0.109 0.891 22 C -0.133 4.133 23 C -0.168 4.168 24 C -0.182 4.182 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.338 0.662 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 11.573 16.022 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.006 3.994 3 H 0.060 0.940 4 N -0.305 5.305 5 C -0.021 4.021 6 C -0.027 4.027 7 C -0.480 4.480 8 H 0.049 0.951 9 C -0.175 4.175 10 N -0.599 5.599 11 Si 0.763 3.237 12 H -0.203 1.203 13 H -0.234 1.234 14 H -0.160 1.160 15 C -0.203 4.203 16 C -0.237 4.237 17 C -0.168 4.168 18 H 0.115 0.885 19 C -0.208 4.208 20 C -0.123 4.123 21 H 0.127 0.873 22 C -0.151 4.151 23 C -0.204 4.204 24 C -0.219 4.219 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.157 0.843 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.448 11.249 15.764 19.520 hybrid contribution 0.129 0.309 -0.685 0.762 sum 2.577 11.558 15.079 19.173 Atomic orbital electron populations 1.21877 0.95195 1.01459 1.00903 1.21038 0.95457 0.94849 0.88068 0.94048 1.60250 1.34972 1.31396 1.03863 1.21520 0.98331 0.91797 0.90433 1.19493 0.95829 0.94191 0.93207 1.20141 1.09478 0.89746 1.28628 0.95076 1.25631 0.97934 0.97061 0.96922 1.70051 1.26333 1.20926 1.42594 0.85957 0.76553 0.81840 0.79301 1.20309 1.23419 1.15969 1.22915 0.91432 1.02373 1.03577 1.22964 1.05906 0.99229 0.95597 1.22445 0.99470 1.04178 0.90702 0.88461 1.23229 0.98898 0.95763 1.02871 1.21862 1.00194 0.97679 0.92525 0.87339 1.21776 0.96458 0.97525 0.99321 1.23046 1.02745 0.96541 0.98116 1.22980 0.93120 1.04400 1.01377 0.93225 0.90671 0.94314 0.84306 0.93341 0.95460 0.93243 0.87990 0.90547 0.91106 0.88396 0.88231 0.88759 0.87472 0.88573 0.87603 0.88206 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.03 71.98 0.58 -3.53 16 2 C 0.12 3.51 3.02 44.92 0.14 3.64 16 3 H 0.04 1.21 7.70 -2.39 -0.02 1.19 16 4 N -0.67 -25.91 5.66 -491.55 -2.78 -28.69 16 5 C 0.11 4.29 5.46 86.30 0.47 4.76 16 6 C -0.03 -1.17 1.10 -52.93 -0.06 -1.23 16 7 C -0.44 -24.90 8.75 25.60 0.22 -24.68 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 9 C 0.02 1.18 5.47 84.65 0.46 1.64 16 10 N -0.96 -61.36 13.96 21.45 0.30 -61.06 16 11 Si 0.94 46.09 25.02 68.60 1.72 47.80 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 14 H -0.24 -10.60 5.39 99.48 0.54 -10.07 16 15 C -0.17 -6.33 9.88 30.59 0.30 -6.03 16 16 C -0.20 -8.04 7.51 30.59 0.23 -7.81 16 17 C -0.15 -3.92 5.45 -10.79 -0.06 -3.98 16 18 H 0.10 2.67 7.84 -2.39 -0.02 2.65 16 19 C -0.17 -4.11 9.29 30.59 0.28 -3.83 16 20 C -0.10 -2.19 5.21 -10.80 -0.06 -2.25 16 21 H 0.11 2.17 7.58 -2.39 -0.02 2.15 16 22 C -0.13 -2.43 5.87 -10.80 -0.06 -2.49 16 23 C -0.17 -2.56 10.25 30.59 0.31 -2.25 16 24 C -0.18 -3.17 10.17 30.59 0.31 -2.86 16 25 H 0.05 1.67 7.33 -2.39 -0.02 1.66 16 26 H 0.07 1.79 6.70 -2.38 -0.02 1.77 16 27 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 28 H 0.34 13.00 8.08 -89.69 -0.73 12.27 16 29 H 0.05 2.04 6.17 -2.38 -0.01 2.02 16 30 H 0.03 0.95 7.75 -2.39 -0.02 0.93 16 31 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 32 H 0.10 3.22 8.08 -2.39 -0.02 3.20 16 33 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.07 3.09 7.09 -2.39 -0.02 3.08 16 35 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.10 2.46 5.88 -2.38 -0.01 2.44 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.62 329.22 2.39 -62.22 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.08 Total: 30.59 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 3.08 Total: -50.87 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -2.48 Total: -89.75 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.72 Total: 47.80 kcal Total: -64.62 2.39 -62.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598976062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.339 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds