Wall clock time and date at job start Mon Mar 30 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46988 * 2 1 4 4 N 1.46897 * 109.47427 * 119.99968 * 2 1 3 5 5 C 1.46902 * 111.00041 * 275.00362 * 4 2 1 6 6 C 1.53000 * 109.46922 * 185.41773 * 5 4 2 7 7 C 1.50696 * 115.55395 * 65.04882 * 6 5 4 8 8 H 1.07997 * 120.00251 * 265.32298 * 7 6 5 9 9 C 1.37878 * 119.99970 * 85.31303 * 7 6 5 10 10 N 1.31512 * 120.00319 * 353.48189 * 9 7 6 11 11 Si 1.86807 * 120.00085 * 173.47572 * 9 7 6 12 12 H 1.48503 * 109.46786 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46757 * 120.00167 * 11 9 7 14 14 H 1.48498 * 109.47185 * 240.00422 * 11 9 7 15 15 C 1.53005 * 117.49780 * 279.37494 * 6 5 4 16 16 C 1.53007 * 117.49905 * 210.71842 * 6 5 4 17 17 C 1.52998 * 109.47112 * 240.00514 * 2 1 3 18 18 H 1.09007 * 115.54546 * 274.41366 * 17 2 1 19 19 C 1.52998 * 117.50161 * 128.74765 * 17 2 1 20 20 C 1.52990 * 117.50263 * 60.08392 * 17 2 1 21 21 H 1.09000 * 117.50077 * 0.02562 * 20 17 2 22 22 C 1.53005 * 117.49942 * 215.03140 * 20 17 2 23 23 C 1.52997 * 117.50043 * 128.62197 * 22 20 17 24 24 C 1.52996 * 117.50079 * 59.99783 * 22 20 17 25 25 H 1.08997 * 109.47325 * 59.99775 * 1 2 3 26 26 H 1.09003 * 109.46709 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46616 * 299.99902 * 1 2 3 28 28 H 1.00900 * 110.99984 * 38.95528 * 4 2 1 29 29 H 1.09002 * 109.46893 * 305.41133 * 5 4 2 30 30 H 1.08996 * 109.47518 * 65.41899 * 5 4 2 31 31 H 0.96996 * 120.00552 * 179.97438 * 10 9 7 32 32 H 1.08993 * 117.49971 * 0.02562 * 15 6 5 33 33 H 1.09001 * 117.49475 * 145.02414 * 15 6 5 34 34 H 1.08996 * 117.50027 * 214.98593 * 16 6 5 35 35 H 1.09003 * 117.49651 * 359.97438 * 16 6 5 36 36 H 1.09002 * 117.49800 * 359.96949 * 19 17 2 37 37 H 1.08995 * 117.49907 * 144.99528 * 19 17 2 38 38 H 1.09004 * 115.54331 * 274.32557 * 22 20 17 39 39 H 1.08998 * 117.50032 * 359.97438 * 23 22 20 40 40 H 1.09000 * 117.49878 * 145.02273 * 23 22 20 41 41 H 1.09002 * 117.49454 * 214.98440 * 24 22 20 42 42 H 1.08998 * 117.50151 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.7215 -0.4953 3.5373 7 6 4.1645 -0.8914 3.3594 8 1 4.4135 -1.8841 3.0148 9 6 5.1670 0.0138 3.6363 10 7 4.8653 1.2594 3.9314 11 14 6.9540 -0.5289 3.5923 12 1 7.0252 -1.9689 3.2364 13 1 7.6886 0.2683 2.5775 14 1 7.5685 -0.3177 4.9276 15 6 1.8302 -1.4257 4.3626 16 6 2.2712 -0.0779 4.9388 17 6 2.0400 -0.7211 -1.2493 18 1 2.1254 -1.8046 -1.1647 19 6 3.0763 0.0041 -2.1101 20 6 1.6375 -0.1482 -2.6095 21 1 1.0096 0.7427 -2.6146 22 6 1.3848 -1.1399 -3.7470 23 6 0.0681 -1.0127 -4.5157 24 6 0.2788 -2.1778 -3.5467 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.4497 -1.4979 1.4100 29 1 2.6818 1.0943 2.0840 30 1 1.0747 0.5413 2.6131 31 1 5.5705 1.8961 4.1266 32 1 0.7888 -1.5266 4.0572 33 1 2.2878 -2.3240 4.7770 34 1 3.0187 -0.0899 5.7320 35 1 1.5201 0.7086 5.0126 36 1 3.3945 0.9952 -1.7867 37 1 3.8434 -0.6022 -2.5919 38 1 2.2677 -1.4469 -4.3077 39 1 -0.6184 -0.2229 -4.2109 40 1 0.0845 -1.2361 -5.5825 41 1 0.4339 -3.1677 -3.9760 42 1 -0.2687 -2.1546 -2.6045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598976076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:18 Heat of formation + Delta-G solvation = 50.941586 kcal Electronic energy + Delta-G solvation = -18370.238696 eV Core-core repulsion = 15737.570775 eV Total energy + Delta-G solvation = -2632.667922 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -40.00476 -38.72087 -37.06960 -35.02309 -33.87144 -30.61541 -27.60535 -26.35153 -24.87875 -23.59500 -23.18663 -22.84401 -21.41262 -20.93203 -20.36768 -18.01607 -16.79403 -16.63451 -16.31923 -16.05385 -15.43158 -15.16336 -15.03744 -14.57273 -13.98545 -13.84860 -13.56865 -13.43956 -12.91281 -12.88472 -12.62282 -12.45635 -12.39632 -12.30984 -12.19212 -12.00645 -11.76026 -11.69937 -11.43231 -11.27379 -10.74231 -10.64746 -10.39341 -10.24107 -9.88559 -8.95228 -8.02333 -6.07784 1.41114 1.43988 1.54459 2.48722 2.68728 3.15695 3.27600 3.30520 3.63165 3.83013 3.87115 4.08923 4.19319 4.25757 4.35097 4.39592 4.44162 4.56247 4.57219 4.60359 4.65324 4.72966 4.79199 4.85721 4.88028 4.99221 5.01140 5.07891 5.11561 5.12936 5.23709 5.29925 5.31389 5.33306 5.38729 5.50739 5.65719 5.78132 5.90497 6.42847 6.56064 6.82676 6.95773 7.57207 9.07027 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.005352 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.343126 B = 5230.772070 C = 5932.684783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 H 0.051 0.949 4 N -0.672 5.672 5 C 0.128 3.872 6 C 0.024 3.976 7 C -0.476 4.476 8 H 0.047 0.953 9 C 0.021 3.979 10 N -0.913 5.913 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.283 1.283 15 C -0.186 4.186 16 C -0.167 4.167 17 C -0.123 4.123 18 H 0.099 0.901 19 C -0.180 4.180 20 C -0.103 4.103 21 H 0.105 0.895 22 C -0.134 4.134 23 C -0.168 4.168 24 C -0.177 4.177 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.337 0.663 29 H 0.036 0.964 30 H 0.006 0.994 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 -3.563 -13.725 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 H 0.070 0.930 4 N -0.302 5.302 5 C -0.001 4.001 6 C 0.024 3.976 7 C -0.514 4.514 8 H 0.065 0.935 9 C -0.177 4.177 10 N -0.553 5.553 11 Si 0.770 3.230 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.209 1.209 15 C -0.223 4.223 16 C -0.206 4.206 17 C -0.142 4.142 18 H 0.117 0.883 19 C -0.217 4.217 20 C -0.122 4.122 21 H 0.123 0.877 22 C -0.152 4.152 23 C -0.205 4.205 24 C -0.214 4.214 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.155 0.845 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.329 -3.314 -13.834 17.011 hybrid contribution 0.425 0.260 0.648 0.818 sum -8.903 -3.054 -13.186 16.200 Atomic orbital electron populations 1.22357 0.95851 1.02446 1.01833 1.21087 0.93105 0.96032 0.89381 0.93048 1.60163 1.57190 1.09476 1.03392 1.21146 0.94501 0.94125 0.90375 1.18961 0.93119 0.97347 0.88205 1.20554 0.90005 0.97818 1.43003 0.93517 1.25562 1.01927 0.94920 0.95318 1.70116 1.32981 1.03286 1.48882 0.85744 0.81597 0.78472 0.77223 1.19437 1.21237 1.20910 1.22963 0.98952 0.93379 1.07054 1.22433 1.01645 0.96774 0.99709 1.22168 1.03111 0.98965 0.89932 0.88305 1.23097 0.92649 1.01666 1.04297 1.21838 0.97398 0.99788 0.93141 0.87653 1.21734 0.93693 1.00492 0.99253 1.23041 0.98458 1.00912 0.98087 1.22991 1.02303 0.94687 1.01431 0.91053 0.91658 0.93718 0.84460 0.94518 0.97650 0.93616 0.89264 0.90629 0.92523 0.91154 0.90063 0.88752 0.87747 0.88552 0.87719 0.88221 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 9.01 71.98 0.65 -3.58 16 2 C 0.11 3.62 2.82 44.92 0.13 3.75 16 3 H 0.05 1.83 7.47 -2.38 -0.02 1.82 16 4 N -0.67 -25.93 6.12 -491.56 -3.01 -28.94 16 5 C 0.13 5.73 5.34 86.30 0.46 6.19 16 6 C 0.02 1.20 1.55 -52.93 -0.08 1.11 16 7 C -0.48 -26.41 8.74 25.60 0.22 -26.18 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.02 1.20 5.39 84.66 0.46 1.66 16 10 N -0.91 -53.40 12.92 21.45 0.28 -53.12 16 11 Si 0.94 45.02 29.54 68.60 2.03 47.05 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 C -0.19 -7.87 9.96 30.62 0.30 -7.56 16 16 C -0.17 -7.94 9.42 30.62 0.29 -7.65 16 17 C -0.12 -3.49 5.09 -10.80 -0.06 -3.54 16 18 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 19 C -0.18 -5.00 9.90 30.62 0.30 -4.69 16 20 C -0.10 -2.37 5.07 -10.77 -0.05 -2.43 16 21 H 0.11 2.32 7.61 -2.39 -0.02 2.30 16 22 C -0.13 -2.60 5.87 -10.79 -0.06 -2.66 16 23 C -0.17 -2.65 10.25 30.59 0.31 -2.34 16 24 C -0.18 -3.10 10.18 30.59 0.31 -2.79 16 25 H 0.07 1.56 7.29 -2.39 -0.02 1.54 16 26 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.04 1.20 7.56 -2.39 -0.02 1.18 16 28 H 0.34 11.98 8.53 -89.69 -0.76 11.21 16 29 H 0.04 1.90 7.92 -2.39 -0.02 1.88 16 30 H 0.01 0.23 7.52 -2.39 -0.02 0.21 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.08 2.42 8.05 -2.39 -0.02 2.40 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -59.74 344.28 2.68 -57.06 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.20 Total: 28.67 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 3.18 Total: -50.71 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.73 Total: -82.07 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -59.74 2.68 -57.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598976076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.005 kcal (2) G-P(sol) polarization free energy of solvation -59.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds