Wall clock time and date at job start Mon Mar 30 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86795 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47348 * 89.99946 * 3 2 1 5 5 H 1.48496 * 109.47176 * 209.99803 * 3 2 1 6 6 H 1.48501 * 109.47334 * 329.99659 * 3 2 1 7 7 C 1.39926 * 119.99944 * 179.71976 * 2 1 3 8 8 H 1.08002 * 120.00179 * 329.30155 * 7 2 1 9 9 C 1.41086 * 119.99961 * 149.29774 * 7 2 1 10 10 C 1.41001 * 120.30245 * 325.55737 * 9 7 2 11 11 F 1.35096 * 120.13181 * 0.02562 * 10 9 7 12 12 C 1.37795 * 119.73709 * 180.02562 * 10 9 7 13 13 C 1.38696 * 120.37299 * 0.02562 * 12 10 9 14 14 C 1.38373 * 120.63060 * 359.97438 * 13 12 10 15 15 C 1.38327 * 120.24279 * 359.71816 * 14 13 12 16 16 O 1.35668 * 120.18636 * 180.27772 * 15 14 13 17 17 C 1.42892 * 117.00308 * 0.30533 * 16 15 14 18 18 F 1.39902 * 109.47494 * 59.99294 * 17 16 15 19 19 F 1.39898 * 109.47400 * 180.02562 * 17 16 15 20 20 F 1.39903 * 109.47022 * 299.99724 * 17 16 15 21 21 H 0.97005 * 120.00181 * 174.86204 * 1 2 3 22 22 H 1.07997 * 119.81236 * 179.97438 * 12 10 9 23 23 H 1.08001 * 119.68565 * 179.97438 * 13 12 10 24 24 H 1.08002 * 119.87753 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0464 1.4000 5 1 3.5404 1.4402 -0.7000 6 1 1.4403 2.6526 -0.7001 7 6 2.0085 -1.2118 0.0059 8 1 1.5820 -2.0792 0.4877 9 6 3.2711 -1.3005 -0.6175 10 6 3.5423 -0.5563 -1.7840 11 9 2.5933 0.2474 -2.3117 12 6 4.7793 -0.6522 -2.3837 13 6 5.7571 -1.4762 -1.8465 14 6 5.5074 -2.2132 -0.7023 15 6 4.2769 -2.1316 -0.0757 16 8 4.0352 -2.8505 1.0492 17 6 5.1002 -3.6683 1.5379 18 9 6.2064 -2.8650 1.8354 19 9 4.6830 -4.3353 2.6947 20 9 5.4540 -4.6058 0.5616 21 1 -0.4850 -0.8367 -0.0752 22 1 4.9882 -0.0831 -3.2774 23 1 6.7226 -1.5432 -2.3258 24 1 6.2778 -2.8507 -0.2942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616575967.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:51 Heat of formation + Delta-G solvation = -222.709788 kcal Electronic energy + Delta-G solvation = -18662.572692 eV Core-core repulsion = 14847.503365 eV Total energy + Delta-G solvation = -3815.069327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.95472 -47.83006 -47.70676 -47.53059 -39.03079 -36.32818 -33.95548 -30.53451 -29.02753 -25.63732 -24.84381 -21.79317 -21.18553 -18.91737 -18.79101 -18.64285 -18.26859 -16.25684 -15.48612 -15.33291 -14.99505 -14.55961 -14.40776 -14.29317 -14.02480 -13.80104 -13.71956 -13.55466 -13.48019 -13.07706 -13.01423 -12.45090 -11.77530 -11.19790 -10.90443 -10.70618 -10.59687 -10.07685 -9.62411 -9.12042 -7.90307 -7.67197 -7.46746 -4.68563 2.15018 2.20415 2.29485 3.24765 3.29849 3.44056 3.46173 4.00094 4.24727 4.36735 4.49617 4.92709 5.46278 5.61277 5.81346 5.89905 6.30863 6.61217 6.97719 7.02190 7.30902 7.38252 7.55534 7.59456 8.10963 8.21608 8.49002 9.77956 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.009756 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.891937 B = 2869.337414 C = 3425.276857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.054 3.946 3 Si 1.071 2.929 4 H -0.291 1.291 5 H -0.262 1.262 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.091 0.909 9 C 0.072 3.928 10 C 0.000 4.000 11 F -0.141 7.141 12 C -0.116 4.116 13 C -0.198 4.198 14 C -0.149 4.149 15 C -0.003 4.003 16 O -0.291 6.291 17 C 0.596 3.404 18 F -0.174 7.174 19 F -0.145 7.145 20 F -0.176 7.176 21 H 0.291 0.709 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -3.101 0.646 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.170 4.170 3 Si 0.896 3.104 4 H -0.219 1.219 5 H -0.186 1.186 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.109 0.891 9 C 0.068 3.932 10 C -0.021 4.021 11 F -0.120 7.120 12 C -0.136 4.136 13 C -0.217 4.217 14 C -0.168 4.168 15 C -0.045 4.045 16 O -0.211 6.211 17 C 0.505 3.495 18 F -0.156 7.156 19 F -0.126 7.126 20 F -0.158 7.158 21 H 0.103 0.897 22 H 0.131 0.869 23 H 0.129 0.871 24 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.466 -1.510 0.817 7.661 hybrid contribution 0.182 -1.980 0.014 1.988 sum 7.649 -3.490 0.831 8.448 Atomic orbital electron populations 1.70555 1.08608 1.33225 1.27707 1.27446 0.95377 1.04622 0.89533 0.83613 0.77238 0.72846 0.76718 1.21902 1.18646 1.19987 1.20386 1.00637 0.99705 1.32719 0.89147 1.16840 0.92401 0.92263 0.91731 1.17129 0.87494 1.01690 0.95741 1.91091 1.64186 1.71204 1.85564 1.20629 0.92374 1.00388 1.00161 1.19914 0.99121 1.03413 0.99256 1.20999 0.95010 1.02428 0.98405 1.18414 0.94891 1.03333 0.87843 1.86339 1.34634 1.56544 1.43553 1.19536 0.76975 0.77228 0.75778 1.93247 1.55158 1.73847 1.93381 1.93230 1.90691 1.79970 1.48756 1.93243 1.92011 1.67118 1.63442 0.89711 0.86909 0.87055 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.64 13.66 55.55 0.76 -19.88 14 2 C 0.05 1.42 4.67 -17.32 -0.08 1.34 14 3 Si 1.07 24.62 25.86 -169.99 -4.40 20.22 14 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.26 -5.94 5.36 56.52 0.30 -5.64 14 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 14 7 C -0.51 -13.59 8.82 -37.87 -0.33 -13.92 14 8 H 0.09 2.51 7.99 -52.49 -0.42 2.09 14 9 C 0.07 1.82 4.89 -106.61 -0.52 1.30 14 10 C 0.00 -0.01 5.08 -38.70 -0.20 -0.21 14 11 F -0.14 -3.44 12.83 2.25 0.03 -3.41 14 12 C -0.12 -2.42 10.00 -39.57 -0.40 -2.82 14 13 C -0.20 -3.87 10.03 -39.36 -0.40 -4.26 14 14 C -0.15 -3.08 8.25 -39.50 -0.33 -3.41 14 15 C 0.00 -0.07 6.51 -38.39 -0.25 -0.32 14 16 O -0.29 -6.44 9.78 -18.71 -0.18 -6.63 14 17 C 0.60 10.79 3.42 101.05 0.35 11.13 14 18 F -0.17 -3.02 15.58 2.25 0.04 -2.98 14 19 F -0.14 -2.41 17.53 2.25 0.04 -2.37 14 20 F -0.18 -3.04 15.55 2.25 0.04 -3.00 14 21 H 0.29 7.45 8.73 -40.82 -0.36 7.10 14 22 H 0.11 2.01 8.06 -52.49 -0.42 1.59 14 23 H 0.11 1.81 8.06 -52.49 -0.42 1.39 14 24 H 0.11 2.04 5.08 -52.49 -0.27 1.78 14 LS Contribution 229.95 15.07 3.47 3.47 Total: -1.00 -26.01 229.95 -3.15 -29.16 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -0.78 Total: -3.42 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.15 Total: -11.16 kcal Atomic # 7 Polarization: -20.64 SS G_CDS: 0.76 Total: -19.88 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.18 Total: -6.63 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 0.14 Total: -11.77 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.40 Total: 20.22 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -26.01 -3.15 -29.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616575967.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.545 kcal (2) G-P(sol) polarization free energy of solvation -26.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds