Wall clock time and date at job start Mon Mar 30 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47181 * 214.63590 * 3 2 1 5 5 C 1.52998 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47409 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47409 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47268 * 180.02562 * 7 6 5 9 9 C 1.46854 * 110.99665 * 293.95495 * 8 7 6 10 10 C 1.53037 * 109.51886 * 185.84309 * 9 8 7 11 11 C 1.53126 * 109.27801 * 300.81620 * 10 9 8 12 12 C 1.53124 * 109.15878 * 57.65645 * 11 10 9 13 13 H 1.08999 * 109.50059 * 62.28737 * 12 11 10 14 14 C 1.50696 * 109.50007 * 182.40592 * 12 11 10 15 15 H 1.07997 * 120.00077 * 120.00524 * 14 12 11 16 16 C 1.37872 * 120.00039 * 299.99707 * 14 12 11 17 17 N 1.31516 * 120.00300 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00131 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46701 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47104 * 120.00167 * 18 16 14 21 21 H 1.48494 * 109.47395 * 240.00479 * 18 16 14 22 22 C 1.46844 * 111.00090 * 58.16171 * 8 7 6 23 23 H 4.44650 * 5.63431 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.47181 * 94.63425 * 3 2 1 25 25 H 1.09004 * 109.47393 * 334.63608 * 3 2 1 26 26 H 1.08999 * 109.47199 * 59.99845 * 4 3 2 27 27 H 1.09004 * 109.46972 * 300.00275 * 4 3 2 28 28 H 1.08999 * 109.47139 * 59.99720 * 5 4 3 29 29 H 1.09004 * 109.47207 * 300.00043 * 5 4 3 30 30 H 1.08999 * 109.47199 * 59.99757 * 6 5 4 31 31 H 1.09004 * 109.46972 * 300.00187 * 6 5 4 32 32 H 1.08998 * 109.46651 * 59.99512 * 7 6 5 33 33 H 1.09003 * 109.46734 * 300.00278 * 7 6 5 34 34 H 1.08994 * 109.46310 * 65.82535 * 9 8 7 35 35 H 1.09004 * 109.45281 * 305.84691 * 9 8 7 36 36 H 1.09000 * 109.50480 * 180.88135 * 10 9 8 37 37 H 1.09002 * 109.53848 * 60.77851 * 10 9 8 38 38 H 1.08998 * 109.52297 * 177.56592 * 11 10 9 39 39 H 1.08999 * 109.51925 * 297.75795 * 11 10 9 40 40 H 0.97000 * 120.00526 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.46133 * 294.17882 * 22 8 7 42 42 H 1.09002 * 109.46165 * 54.15521 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1877 0.8199 5 6 4.6855 1.1888 0.8194 6 6 5.1950 2.3756 1.6398 7 6 6.7249 2.3770 1.6387 8 7 7.2141 3.5161 2.4269 9 6 6.8630 4.7895 1.7852 10 6 7.5107 5.9444 2.5525 11 6 7.0166 5.9285 4.0018 12 6 7.3516 4.5738 4.6321 13 1 8.4329 4.4375 4.6485 14 6 6.8164 4.5279 6.0400 15 1 6.0926 3.7763 6.3184 16 6 7.2510 5.4453 6.9730 17 7 8.1322 6.3609 6.6340 18 14 6.5881 5.3880 8.7185 19 1 5.6165 4.2718 8.8425 20 1 7.7103 5.1747 9.6674 21 1 5.9110 6.6716 9.0333 22 6 6.7087 3.4586 3.8044 23 1 -1.0502 -0.0001 -0.0003 24 1 3.0093 0.0838 -1.0243 25 1 3.0098 -0.9278 0.4402 26 1 2.7922 1.1046 1.8441 27 1 2.7917 2.1162 0.3796 28 1 5.0484 1.2723 -0.2050 29 1 5.0496 0.2604 1.2593 30 1 4.8320 2.2917 2.6641 31 1 4.8308 3.3042 1.2002 32 1 7.0874 2.4611 0.6142 33 1 7.0894 1.4484 2.0780 34 1 5.7800 4.9122 1.7902 35 1 7.2239 4.7893 0.7566 36 1 7.2372 6.8904 2.0853 37 1 8.5946 5.8304 2.5363 38 1 7.5083 6.7230 4.5630 39 1 5.9376 6.0820 4.0205 40 1 8.4377 7.0066 7.2902 41 1 5.6263 3.5876 3.7998 42 1 6.9573 2.4919 4.2425 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686702668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:24 Heat of formation + Delta-G solvation = 5.627393 kcal Electronic energy + Delta-G solvation = -18049.639663 eV Core-core repulsion = 15415.006770 eV Total energy + Delta-G solvation = -2634.632893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09594 -37.37722 -35.83647 -34.38629 -33.09467 -31.67142 -30.57533 -27.10234 -26.89391 -24.67024 -23.20237 -22.31169 -22.05504 -19.94984 -18.87502 -18.42279 -16.88299 -16.71076 -16.16372 -15.75893 -15.44220 -15.10293 -14.89591 -14.86177 -14.29162 -14.08000 -13.94973 -13.42289 -13.10313 -12.88179 -12.86307 -12.68095 -12.49096 -12.35366 -12.01832 -11.94348 -11.77700 -11.70672 -11.38284 -11.24536 -11.06443 -10.97946 -10.82083 -10.64158 -10.37696 -8.99561 -8.07949 -6.22251 1.39629 1.41135 1.52627 1.87484 1.91330 2.42691 3.18689 3.22685 3.50234 3.97962 3.98907 4.21032 4.22332 4.26671 4.31370 4.41498 4.60888 4.65391 4.66702 4.69324 4.79430 4.86541 4.91502 4.96429 4.98592 5.02475 5.10893 5.13296 5.20899 5.22730 5.30407 5.38376 5.45176 5.49806 5.54732 5.63973 5.98557 6.14753 6.23518 6.45059 6.48492 6.70977 6.91150 7.45716 8.96846 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.004259 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.383392 B = 6573.013234 C = 7413.280212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.218 4.218 3 C -0.013 4.013 4 C -0.111 4.111 5 C -0.104 4.104 6 C -0.153 4.153 7 C 0.057 3.943 8 N -0.552 5.552 9 C 0.066 3.934 10 C -0.113 4.113 11 C -0.104 4.104 12 C 0.050 3.950 13 H -0.006 1.006 14 C -0.536 4.536 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.084 3.916 23 H 0.241 0.759 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.260 0.740 41 H 0.019 0.981 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 -9.745 -14.504 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.218 4.218 3 C -0.049 4.049 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.193 4.193 7 C -0.071 4.071 8 N -0.275 5.275 9 C -0.061 4.061 10 C -0.151 4.151 11 C -0.142 4.142 12 C 0.032 3.968 13 H 0.012 0.988 14 C -0.574 4.574 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.044 4.044 23 H 0.257 0.743 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.251 -9.627 -14.411 19.195 hybrid contribution -1.269 0.399 1.365 1.906 sum -9.521 -9.227 -13.047 18.601 Atomic orbital electron populations 1.25721 0.97051 1.00360 1.00626 1.23896 0.95845 1.01070 1.00968 1.18853 0.83758 0.99917 1.02400 1.21491 0.96009 0.97701 0.99625 1.21450 0.94016 0.97856 1.00891 1.22195 0.97524 0.99446 1.00092 1.22291 0.92642 0.93565 0.98605 1.62145 1.59876 1.03124 1.02368 1.22016 0.97329 0.88979 0.97812 1.21609 0.99946 0.97633 0.95873 1.21457 0.97441 1.00831 0.94487 1.18610 0.94277 0.91559 0.92391 0.98782 1.21563 1.24862 1.14540 0.96457 0.93172 1.25732 0.95239 0.95101 1.02499 1.70045 1.32049 1.18152 1.35299 0.85567 0.78311 0.78002 0.80142 1.19204 1.20544 1.20566 1.21922 0.95715 0.98803 0.87941 0.74258 0.88095 0.88560 0.93105 0.92383 0.90043 0.90965 0.93693 0.92527 0.89261 0.90940 0.95401 0.89371 0.91357 0.93212 0.92490 0.96088 0.93075 0.96302 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.94 19.25 74.32 1.43 -2.51 16 2 C -0.22 -4.35 13.34 31.12 0.42 -3.93 16 3 C -0.01 -0.21 5.70 28.79 0.16 -0.04 16 4 C -0.11 -2.05 5.17 30.59 0.16 -1.89 16 5 C -0.10 -1.85 5.21 30.59 0.16 -1.69 16 6 C -0.15 -3.79 4.52 30.59 0.14 -3.65 16 7 C 0.06 1.52 5.36 86.30 0.46 1.98 16 8 N -0.55 -19.84 4.86 -896.36 -4.35 -24.20 16 9 C 0.07 2.22 5.05 86.32 0.44 2.66 16 10 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 11 C -0.10 -5.12 5.02 30.68 0.15 -4.96 16 12 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 13 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 14 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.01 0.73 5.30 84.65 0.45 1.18 16 17 N -0.92 -54.20 11.35 21.45 0.24 -53.96 16 18 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 C 0.08 3.62 4.06 86.33 0.35 3.97 16 23 H 0.24 2.50 7.80 -4.41 -0.03 2.47 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.10 1.31 8.14 -2.38 -0.02 1.30 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 1.32 6.50 -2.39 -0.02 1.30 16 31 H 0.06 1.45 6.68 -2.38 -0.02 1.43 16 32 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.03 0.93 6.75 -2.39 -0.02 0.91 16 35 H 0.09 2.43 8.06 -2.38 -0.02 2.41 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 3.17 6.15 -2.39 -0.01 3.15 16 39 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.02 0.82 6.61 -2.39 -0.02 0.81 16 42 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -64.27 332.34 3.56 -60.71 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.94 Total: 11.70 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 4.70 Total: -40.76 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -4.11 Total: -78.16 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.27 3.56 -60.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686702668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.342 kcal (2) G-P(sol) polarization free energy of solvation -64.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds