Wall clock time and date at job start Mon Mar 30 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46821 * 194.87387 * 3 2 1 5 5 C 1.53008 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46965 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46926 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.46847 * 110.99862 * 66.05037 * 8 7 6 10 10 C 1.53044 * 109.51335 * 174.15436 * 9 8 7 11 11 C 1.53119 * 109.27589 * 59.18419 * 10 9 8 12 12 C 1.53120 * 109.16202 * 302.34077 * 11 10 9 13 13 H 1.08996 * 109.50004 * 297.72216 * 12 11 10 14 14 C 1.50697 * 109.50290 * 177.63586 * 12 11 10 15 15 H 1.07997 * 120.00495 * 240.00286 * 14 12 11 16 16 C 1.37880 * 119.99487 * 60.00267 * 14 12 11 17 17 N 1.31518 * 120.00428 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99610 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46967 * 60.00324 * 18 16 14 20 20 H 1.48503 * 109.46839 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47286 * 300.00184 * 18 16 14 22 22 C 1.46847 * 110.99299 * 301.84195 * 8 7 6 23 23 H 4.44648 * 5.63444 * 180.02562 * 4 1 2 24 24 H 1.08999 * 109.46751 * 74.87528 * 3 2 1 25 25 H 1.08996 * 109.47453 * 314.87961 * 3 2 1 26 26 H 1.08999 * 109.47343 * 60.00503 * 4 3 2 27 27 H 1.08997 * 109.47326 * 299.99758 * 4 3 2 28 28 H 1.08999 * 109.46834 * 60.00002 * 5 4 3 29 29 H 1.08996 * 109.46703 * 300.00477 * 5 4 3 30 30 H 1.08999 * 109.47343 * 60.00314 * 6 5 4 31 31 H 1.08997 * 109.47101 * 300.00074 * 6 5 4 32 32 H 1.09004 * 109.47161 * 60.00228 * 7 6 5 33 33 H 1.08996 * 109.47358 * 300.00580 * 7 6 5 34 34 H 1.09002 * 109.46448 * 54.14158 * 9 8 7 35 35 H 1.08994 * 109.45958 * 294.16523 * 9 8 7 36 36 H 1.09000 * 109.49745 * 179.12223 * 10 9 8 37 37 H 1.08999 * 109.49729 * 299.20033 * 10 9 8 38 38 H 1.08993 * 109.52284 * 62.25342 * 11 10 9 39 39 H 1.09003 * 109.51690 * 182.37761 * 11 10 9 40 40 H 0.97001 * 119.99568 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.46836 * 65.83946 * 22 8 7 42 42 H 1.08995 * 109.45748 * 305.85482 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.3951 0.3703 5 6 4.6854 1.3960 0.3697 6 6 5.1947 2.7905 0.7393 7 6 6.7247 2.7912 0.7393 8 7 7.2137 4.1304 1.0937 9 6 6.8643 4.4686 2.4792 10 6 7.5120 5.8022 2.8588 11 6 7.0163 6.8941 1.9066 12 6 7.3496 6.4943 0.4666 13 1 8.4308 6.4186 0.3509 14 6 6.8137 7.5359 -0.4816 15 1 6.0889 7.2601 -1.2332 16 6 7.2489 8.8409 -0.3894 17 7 8.1320 9.1767 0.5255 18 14 6.5851 10.1319 -1.5652 19 1 5.1119 10.2331 -1.4088 20 1 7.2072 11.4455 -1.2604 21 1 6.9092 9.7433 -2.9614 22 6 6.7066 5.1406 0.1563 23 1 -1.0502 -0.0004 0.0001 24 1 3.0094 -0.2673 -0.9921 25 1 3.0097 -0.7243 0.7281 26 1 2.7919 1.6630 1.3624 27 1 2.7917 2.1199 -0.3580 28 1 5.0484 1.1281 -0.6226 29 1 5.0494 0.6709 1.0976 30 1 4.8317 3.0588 1.7315 31 1 4.8306 3.5151 0.0110 32 1 7.0882 2.5228 -0.2527 33 1 7.0884 2.0666 1.4678 34 1 7.2260 3.6862 3.1464 35 1 5.7813 4.5518 2.5707 36 1 7.2397 6.0607 3.8821 37 1 8.5958 5.7154 2.7814 38 1 5.9376 7.0077 2.0127 39 1 7.5074 7.8371 2.1467 40 1 8.4383 10.0948 0.5899 41 1 5.6244 5.2207 0.2589 42 1 6.9541 4.8463 -0.8636 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686702669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:28 Heat of formation + Delta-G solvation = 21.122664 kcal Electronic energy + Delta-G solvation = -18048.624132 eV Core-core repulsion = 15414.663165 eV Total energy + Delta-G solvation = -2633.960967 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.59147 -36.41673 -34.37223 -32.95538 -31.69957 -29.84939 -29.48551 -25.94858 -24.90734 -23.38794 -21.52254 -21.26675 -20.69520 -18.38533 -18.07074 -16.35330 -15.92519 -15.05677 -14.62919 -14.42059 -14.30876 -13.93359 -13.80413 -13.27942 -12.71453 -12.63440 -12.48312 -11.98296 -11.91094 -11.52285 -11.30160 -11.09098 -11.00477 -10.91810 -10.78208 -10.63246 -10.30347 -10.29328 -10.27311 -9.97013 -9.76577 -9.41698 -8.98522 -8.66807 -8.26590 -7.53289 -5.94075 -4.00258 2.62630 2.65317 3.34146 3.38767 3.41223 4.15947 4.43585 4.65509 4.82973 4.87398 5.05170 5.19958 5.35695 5.38491 5.53452 5.54955 5.73072 5.74347 5.76587 5.90432 5.91542 5.96280 5.97434 6.12333 6.16541 6.23793 6.41267 6.44034 6.52433 6.58196 6.77748 6.81515 7.03107 7.26692 7.43135 7.45464 7.73187 7.79140 7.89922 8.13201 8.21843 8.52365 9.03859 9.63808 11.11849 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004258 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.039773 B = 6573.867963 C = 7414.057696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.160 4.160 7 C 0.056 3.944 8 N -0.538 5.538 9 C 0.062 3.938 10 C -0.118 4.118 11 C -0.110 4.110 12 C 0.054 3.946 13 H 0.033 0.967 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.066 3.934 23 H 0.216 0.784 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.090 0.910 40 H 0.260 0.740 41 H 0.022 0.978 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 -15.616 1.821 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.199 4.199 7 C -0.072 4.072 8 N -0.261 5.261 9 C -0.066 4.066 10 C -0.156 4.156 11 C -0.148 4.148 12 C 0.035 3.965 13 H 0.051 0.949 14 C -0.554 4.554 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.061 4.061 23 H 0.232 0.768 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.296 -15.441 1.856 17.179 hybrid contribution -1.578 0.757 -0.546 1.833 sum -8.874 -14.684 1.310 17.207 Atomic orbital electron populations 1.24910 0.96006 1.01141 1.01564 1.23286 0.94745 1.00194 1.00066 1.18816 0.84474 0.98894 1.02967 1.21576 0.96053 0.95382 1.02269 1.21525 0.94176 0.97665 1.01788 1.22298 0.98568 0.96969 1.02103 1.22188 0.91786 0.92063 1.01210 1.62222 1.59246 1.01709 1.02931 1.22025 0.97305 0.97706 0.89581 1.21686 1.00564 0.94984 0.98385 1.21645 0.98418 0.98675 0.96098 1.18661 0.96572 0.88793 0.92442 0.94908 1.21126 1.24769 0.93408 1.16060 0.92950 1.24935 0.94981 0.98411 0.95509 1.69887 1.30936 1.18380 1.33565 0.86701 0.79106 0.80867 0.81547 1.20404 1.21325 1.20306 1.22308 0.96473 0.93199 0.94084 0.76758 0.89563 0.89649 0.91722 0.91535 0.91778 0.91987 0.92070 0.91308 0.91274 0.91751 0.92651 0.95720 0.93675 0.92172 0.95269 0.89175 0.93036 0.95939 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.18 -1.95 13.34 -37.12 -0.50 -2.45 16 3 C -0.01 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.12 -1.16 5.17 -26.73 -0.14 -1.29 16 5 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 6 C -0.16 -2.12 4.52 -26.73 -0.12 -2.24 16 7 C 0.06 0.82 5.36 -3.83 -0.02 0.80 16 8 N -0.54 -10.01 4.86 -234.67 -1.14 -11.15 16 9 C 0.06 1.10 5.05 -3.83 -0.02 1.08 16 10 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -14.26 8.57 -34.44 -0.30 -14.56 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.60 11.35 55.43 0.63 -24.97 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.07 1.42 4.06 -3.83 -0.02 1.40 16 23 H 0.22 1.34 7.80 -54.08 -0.42 0.92 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 31 H 0.07 1.03 6.50 -51.93 -0.34 0.69 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 35 H 0.02 0.44 6.76 -51.93 -0.35 0.09 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 42 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -29.09 332.34 -9.54 -38.63 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.57 Total: -1.02 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.44 Total: -22.89 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.51 Total: -36.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.09 -9.54 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686702669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.753 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds