Wall clock time and date at job start Mon Mar 30 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47172 * 262.18671 * 3 2 1 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47131 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47438 * 179.97438 * 7 6 5 9 9 C 1.46843 * 111.00258 * 294.21859 * 8 7 6 10 10 C 1.53035 * 109.52488 * 174.15905 * 9 8 7 11 11 C 1.53115 * 109.28198 * 59.17597 * 10 9 8 12 12 C 1.50699 * 109.57805 * 182.41122 * 11 10 9 13 13 H 1.07994 * 120.00243 * 119.70971 * 12 11 10 14 14 C 1.37882 * 119.99826 * 299.71191 * 12 11 10 15 15 N 1.31508 * 119.99900 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00035 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46772 * 60.00110 * 16 14 12 18 18 H 1.48495 * 109.47096 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46950 * 300.00332 * 16 14 12 20 20 C 1.53117 * 109.15892 * 302.34661 * 11 10 9 21 21 C 1.46841 * 111.00407 * 170.00191 * 8 7 6 22 22 H 4.44648 * 5.63367 * 180.02562 * 4 1 2 23 23 H 1.09001 * 109.47037 * 142.18488 * 3 2 1 24 24 H 1.09004 * 109.47214 * 22.18927 * 3 2 1 25 25 H 1.09001 * 109.46832 * 60.00246 * 4 3 2 26 26 H 1.08993 * 109.47194 * 299.99768 * 4 3 2 27 27 H 1.09001 * 109.46801 * 300.00272 * 5 4 3 28 28 H 1.09001 * 109.46998 * 59.99868 * 5 4 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 6 5 4 30 30 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 31 31 H 1.09000 * 109.47380 * 300.00763 * 7 6 5 32 32 H 1.09001 * 109.46997 * 60.00426 * 7 6 5 33 33 H 1.09007 * 109.45803 * 294.17042 * 9 8 7 34 34 H 1.09003 * 109.46921 * 54.13491 * 9 8 7 35 35 H 1.08997 * 109.50241 * 299.23141 * 10 9 8 36 36 H 1.09004 * 109.50497 * 179.11966 * 10 9 8 37 37 H 1.08999 * 109.52640 * 62.25021 * 11 10 9 38 38 H 0.97002 * 120.00209 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.50645 * 297.71420 * 20 11 10 40 40 H 1.09001 * 109.50417 * 177.59487 * 20 11 10 41 41 H 1.09002 * 109.46006 * 305.85836 * 21 8 7 42 42 H 1.08998 * 109.46599 * 65.83290 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.1970 1.4291 5 6 4.6860 0.1970 1.4292 6 6 5.1959 0.3927 2.8583 7 6 6.7258 0.3921 2.8585 8 7 7.2155 0.5806 4.2305 9 6 6.8612 1.9125 4.7375 10 6 7.2568 2.0204 6.2119 11 6 8.7636 1.7855 6.3496 12 6 9.1509 1.8317 7.8052 13 1 9.6013 0.9682 8.2718 14 6 8.9301 2.9765 8.5413 15 7 8.3811 4.0279 7.9733 16 14 9.4095 3.0335 10.3459 17 1 10.8699 2.7983 10.4777 18 1 9.0697 4.3660 10.9064 19 1 8.6696 1.9814 11.0881 20 6 9.1130 0.4119 5.7705 21 6 8.6637 0.3506 4.3088 22 1 -1.0500 -0.0002 0.0000 23 1 3.0089 0.8127 -0.6301 24 1 3.0098 -0.9508 -0.3881 25 1 2.7929 -0.6151 2.0591 26 1 2.7922 1.1483 1.8171 27 1 5.0493 -0.7546 1.0412 28 1 5.0493 1.0088 0.7990 29 1 4.8325 1.3441 3.2466 30 1 4.8326 -0.4194 3.4881 31 1 7.0889 -0.5595 2.4702 32 1 7.0895 1.2040 2.2286 33 1 7.3908 2.6724 4.1628 34 1 5.7866 2.0652 4.6376 35 1 6.7172 1.2698 6.7893 36 1 7.0080 3.0144 6.5836 37 1 9.3042 2.5590 5.8041 38 1 8.2255 4.8331 8.4912 39 1 8.6026 -0.3642 6.3409 40 1 10.1905 0.2566 5.8268 41 1 8.8981 -0.6313 3.8977 42 1 9.1848 1.1178 3.7363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686703001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:18 Heat of formation + Delta-G solvation = 20.215618 kcal Electronic energy + Delta-G solvation = -17758.346030 eV Core-core repulsion = 15124.345730 eV Total energy + Delta-G solvation = -2634.000300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.38712 -36.51936 -34.46014 -33.07502 -31.47285 -29.76688 -29.68022 -26.56281 -24.79491 -22.52381 -22.06643 -21.17588 -20.42064 -18.54021 -18.22291 -16.34510 -15.96792 -15.27848 -14.61040 -14.50315 -14.25932 -14.13311 -13.63152 -13.15405 -12.88423 -12.57377 -12.36086 -12.17665 -11.88988 -11.63512 -11.17926 -11.13865 -10.95519 -10.87495 -10.67863 -10.47322 -10.40321 -10.29552 -10.17655 -10.14737 -9.92001 -9.35899 -8.90996 -8.65037 -8.25265 -7.68016 -5.93462 -3.98696 2.60321 2.63125 3.35240 3.39572 3.42528 4.11846 4.44038 4.48659 4.80927 4.94357 5.00880 5.19304 5.35724 5.36695 5.50647 5.57636 5.64430 5.73352 5.80308 5.89325 5.91795 5.94136 5.97843 6.08959 6.16697 6.26291 6.36269 6.37478 6.44955 6.68315 6.70033 6.90767 7.13448 7.22397 7.40910 7.49654 7.67858 7.77329 7.88885 8.09920 8.20736 8.52713 9.04844 9.65336 11.12712 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.037361 B = 0.003390 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.267061 B = 8258.472814 C = 8769.782722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C -0.015 4.015 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.055 3.945 8 N -0.537 5.537 9 C 0.056 3.944 10 C -0.104 4.104 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.107 4.107 21 C 0.061 3.939 22 H 0.215 0.785 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 -6.819 -14.530 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.073 4.073 8 N -0.262 5.262 9 C -0.072 4.072 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.144 4.144 21 C -0.067 4.067 22 H 0.232 0.768 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.561 -6.971 -14.178 18.467 hybrid contribution 0.395 0.729 0.434 0.936 sum -9.165 -6.242 -13.743 17.659 Atomic orbital electron populations 1.24906 0.96004 1.01576 1.01100 1.23275 0.94731 1.00067 1.00218 1.18816 0.84483 1.03165 0.98732 1.21551 0.95813 1.02811 0.94981 1.21570 0.94343 1.01958 0.97678 1.21597 0.95209 1.02795 0.95832 1.22063 0.95083 0.99968 0.90208 1.61987 1.14213 1.30622 1.19408 1.22311 0.98785 0.87114 0.98955 1.21656 0.98915 1.03133 0.90545 1.18678 0.92399 0.90694 0.95321 1.21183 1.39783 0.98669 0.95202 0.92823 1.24972 0.95236 0.95710 0.98134 1.69868 1.43860 1.03355 1.36114 0.86696 0.78923 0.77013 0.85566 1.20390 1.21392 1.20318 1.21680 0.98782 1.01153 0.92828 1.22098 0.86999 0.98656 0.98932 0.76771 0.89619 0.89612 0.91477 0.91513 0.91867 0.91994 0.91721 0.91196 0.91661 0.95748 0.96176 0.92419 0.93886 0.89057 0.96247 0.93081 0.92516 0.93271 0.92580 0.95983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.00 19.25 29.55 0.57 -1.43 16 2 C -0.18 -1.84 13.34 -37.12 -0.50 -2.33 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.11 -1.04 5.17 -26.73 -0.14 -1.18 16 5 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 6 C -0.12 -1.45 5.14 -26.73 -0.14 -1.59 16 7 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 8 N -0.54 -9.76 4.66 -234.68 -1.09 -10.85 16 9 C 0.06 1.11 5.29 -3.84 -0.02 1.09 16 10 C -0.10 -2.51 5.12 -26.65 -0.14 -2.64 16 11 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 12 C -0.51 -14.22 8.57 -34.44 -0.29 -14.52 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.72 11.37 55.43 0.63 -25.09 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 21 C 0.06 1.13 5.46 -3.84 -0.02 1.10 16 22 H 0.22 1.23 7.80 -54.09 -0.42 0.81 16 23 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.87 6.43 -51.93 -0.33 0.53 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 32 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.06 1.06 6.21 -51.93 -0.32 0.74 16 35 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -29.27 335.54 -9.55 -38.82 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.69 Total: -2.33 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.44 Total: -22.10 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.46 Total: -35.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.27 -9.55 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686703001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.036 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds