Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47128 * 264.05208 * 3 2 1 5 5 C 1.53001 * 109.47222 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47680 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47671 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47373 * 179.97438 * 7 6 5 9 9 C 1.36933 * 120.00240 * 270.00099 * 8 7 6 10 10 H 1.07997 * 120.00637 * 142.01152 * 9 8 7 11 11 C 1.38820 * 119.99728 * 322.00793 * 9 8 7 12 12 N 1.31617 * 120.00002 * 156.08926 * 11 9 8 13 13 Si 1.86802 * 120.00010 * 336.09427 * 11 9 8 14 14 H 1.48507 * 109.46917 * 95.28647 * 13 11 9 15 15 H 1.48496 * 109.46914 * 215.28529 * 13 11 9 16 16 H 1.48502 * 109.47090 * 335.29092 * 13 11 9 17 17 C 1.46507 * 120.00087 * 89.99706 * 8 7 6 18 18 C 1.54266 * 110.03254 * 242.57987 * 17 8 7 19 19 C 1.54962 * 104.16081 * 217.13647 * 18 17 8 20 20 C 1.54889 * 102.77997 * 37.88795 * 19 18 17 21 21 C 1.53870 * 110.03320 * 125.36281 * 17 8 7 22 22 H 4.44647 * 5.63464 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.47300 * 144.05412 * 3 2 1 24 24 H 1.09005 * 109.47080 * 24.05447 * 3 2 1 25 25 H 1.09001 * 109.47077 * 60.00443 * 4 3 2 26 26 H 1.08999 * 109.46922 * 299.99970 * 4 3 2 27 27 H 1.09005 * 109.47386 * 59.99532 * 5 4 3 28 28 H 1.09005 * 109.46829 * 300.00143 * 5 4 3 29 29 H 1.09005 * 109.47220 * 59.99274 * 6 5 4 30 30 H 1.08999 * 109.47126 * 300.00298 * 6 5 4 31 31 H 1.08992 * 109.47577 * 59.99651 * 7 6 5 32 32 H 1.09005 * 109.46754 * 299.99935 * 7 6 5 33 33 H 0.96997 * 119.99896 * 180.02562 * 12 11 9 34 34 H 1.08997 * 110.01725 * 3.97135 * 17 8 7 35 35 H 1.08997 * 110.48506 * 335.78556 * 18 17 8 36 36 H 1.09006 * 110.48623 * 98.42714 * 18 17 8 37 37 H 1.09001 * 110.72050 * 279.57458 * 19 18 17 38 38 H 1.09003 * 110.92406 * 156.29988 * 19 18 17 39 39 H 1.08997 * 110.48998 * 203.40959 * 20 19 18 40 40 H 1.09000 * 110.59508 * 80.81413 * 20 19 18 41 41 H 1.09002 * 110.03461 * 238.57223 * 21 17 8 42 42 H 1.09004 * 110.03262 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1559 0.1504 1.4347 5 6 4.6859 0.1517 1.4347 6 6 5.1959 0.3007 2.8694 7 6 6.7258 0.3027 2.8693 8 7 7.2141 0.4461 4.2430 9 6 7.4408 1.6926 4.7626 10 1 7.2007 1.8992 5.7951 11 6 7.9793 2.6907 3.9621 12 7 7.7749 3.9561 4.2611 13 14 8.9940 2.2380 2.4604 14 1 8.1246 2.2410 1.2564 15 1 10.0866 3.2281 2.2845 16 1 9.5771 0.8850 2.6466 17 6 7.4599 -0.7442 5.0611 18 6 6.5278 -0.7423 6.2903 19 6 7.4023 -1.3234 7.4301 20 6 8.7950 -0.7110 7.1396 21 6 8.9007 -0.7247 5.6006 22 1 -1.0501 0.0002 0.0000 23 1 3.0089 0.8328 -0.6033 24 1 3.0097 -0.9376 -0.4189 25 1 2.7930 -0.6818 2.0380 26 1 2.7921 1.0886 1.8535 27 1 5.0485 0.9840 0.8314 28 1 5.0500 -0.7864 1.0156 29 1 4.8332 -0.5318 3.4723 30 1 4.8318 1.2386 3.2889 31 1 7.0881 1.1355 2.2666 32 1 7.0903 -0.6350 2.4497 33 1 8.1508 4.6535 3.7016 34 1 7.2950 -1.6444 4.4690 35 1 6.2149 0.2739 6.5301 36 1 5.6602 -1.3777 6.1123 37 1 7.4389 -2.4112 7.3716 38 1 7.0348 -1.0026 8.4049 39 1 9.5808 -1.3235 7.5815 40 1 8.8510 0.3102 7.5167 41 1 9.4350 -1.6159 5.2710 42 1 9.4174 0.1701 5.2535 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686708389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = 42.548625 kcal Electronic energy + Delta-G solvation = -18406.117374 eV Core-core repulsion = 15773.085506 eV Total energy + Delta-G solvation = -2633.031868 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -37.96417 -36.33172 -34.66866 -32.88436 -31.41337 -29.78643 -27.89214 -27.02101 -25.77110 -23.12453 -21.44287 -20.65610 -19.93223 -18.88258 -18.02869 -16.34392 -15.71360 -15.32531 -15.11552 -14.38548 -14.10167 -13.69458 -13.58203 -13.24530 -12.73965 -12.52610 -12.28130 -11.99316 -11.60965 -11.39449 -11.04389 -10.90755 -10.71976 -10.49637 -10.42591 -10.40189 -10.29961 -10.25475 -10.07605 -10.00913 -9.89503 -9.72356 -9.54326 -9.34412 -8.41521 -6.69886 -5.95378 -3.33809 2.79442 2.81636 3.33668 3.49672 3.55422 4.34383 4.57135 4.93442 5.13679 5.25982 5.29761 5.36985 5.39623 5.47245 5.63602 5.66446 5.73844 5.96843 5.99087 6.02539 6.08551 6.21476 6.25132 6.27702 6.34313 6.34765 6.40388 6.47427 6.53838 6.54856 6.58513 6.64841 6.77742 6.97154 6.99219 7.10967 7.19444 7.23689 7.59306 8.13437 8.47509 9.09215 9.79332 10.21911 11.20589 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.005942 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.645846 B = 4711.207985 C = 5717.756024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.018 4.018 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.132 4.132 7 C 0.138 3.862 8 N -0.601 5.601 9 C -0.255 4.255 10 H 0.078 0.922 11 C 0.037 3.963 12 N -0.900 5.900 13 Si 0.870 3.130 14 H -0.287 1.287 15 H -0.304 1.304 16 H -0.269 1.269 17 C 0.173 3.827 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.134 4.134 22 H 0.215 0.785 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.261 0.739 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 -10.230 -3.578 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.176 4.176 3 C -0.054 4.054 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.172 4.172 7 C 0.012 3.988 8 N -0.322 5.322 9 C -0.384 4.384 10 H 0.096 0.904 11 C -0.163 4.163 12 N -0.541 5.541 13 Si 0.700 3.300 14 H -0.215 1.215 15 H -0.232 1.232 16 H -0.194 1.194 17 C 0.066 3.934 18 C -0.173 4.173 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.173 4.173 22 H 0.232 0.768 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.149 -10.046 -3.614 12.320 hybrid contribution 0.359 -0.067 -0.918 0.988 sum -5.790 -10.113 -4.532 12.503 Atomic orbital electron populations 1.24851 0.95945 1.01990 1.01578 1.23355 0.94772 0.99699 0.99814 1.18871 0.84299 1.03119 0.99130 1.21555 0.96368 1.02613 0.94373 1.21608 0.93808 1.01458 0.98933 1.22110 0.98737 1.02114 0.94221 1.21186 0.91929 0.98484 0.87172 1.44310 1.74872 1.02379 1.10672 1.18609 1.36298 0.85000 0.98457 0.90421 1.25464 0.98037 0.95011 0.97786 1.69891 1.45053 0.99069 1.40107 0.87037 0.81078 0.78163 0.83710 1.21488 1.23199 1.19398 1.21031 0.92063 0.88958 0.91352 1.22838 0.97436 1.01308 0.95744 1.22434 0.96404 0.98913 0.98305 1.22240 0.95959 1.00447 0.96818 1.22547 0.98855 1.01252 0.94644 0.76847 0.89578 0.89731 0.91865 0.91530 0.92100 0.92509 0.93046 0.91330 0.92973 0.94780 0.92881 0.93238 0.90391 0.93468 0.92753 0.92755 0.93348 0.91638 0.93905 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.56 19.25 29.55 0.57 -1.99 16 2 C -0.18 -2.23 13.34 -37.12 -0.50 -2.73 16 3 C -0.02 -0.21 5.70 -29.52 -0.17 -0.37 16 4 C -0.11 -1.47 5.17 -26.73 -0.14 -1.61 16 5 C -0.12 -1.78 5.21 -26.73 -0.14 -1.92 16 6 C -0.13 -2.41 5.54 -26.74 -0.15 -2.56 16 7 C 0.14 2.90 4.51 -4.05 -0.02 2.88 16 8 N -0.60 -13.74 2.02 -164.40 -0.33 -14.07 16 9 C -0.26 -6.83 8.19 -15.06 -0.12 -6.95 16 10 H 0.08 2.27 7.09 -52.49 -0.37 1.90 16 11 C 0.04 1.05 5.27 -17.43 -0.09 0.95 16 12 N -0.90 -27.05 13.97 55.49 0.78 -26.28 16 13 Si 0.87 21.92 25.19 -169.99 -4.28 17.64 16 14 H -0.29 -7.03 6.65 56.52 0.38 -6.66 16 15 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.17 3.40 3.42 -66.81 -0.23 3.17 16 18 C -0.13 -2.43 6.43 -25.03 -0.16 -2.59 16 19 C -0.12 -1.92 6.91 -24.70 -0.17 -2.09 16 20 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 21 C -0.13 -2.56 6.24 -25.61 -0.16 -2.72 16 22 H 0.21 1.62 7.80 -54.09 -0.42 1.20 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.05 1.21 3.44 -51.93 -0.18 1.03 16 32 H 0.03 0.65 7.91 -51.93 -0.41 0.24 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 35 H 0.08 1.63 6.65 -51.93 -0.35 1.28 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.79 7.17 -51.93 -0.37 1.41 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -29.28 334.24 -8.03 -37.31 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.59 Total: 1.02 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.65 Total: -20.66 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.44 Total: -40.35 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.28 Total: 17.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.28 -8.03 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686708389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.858 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds