Wall clock time and date at job start Mon Mar 30 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00125 * 2 1 4 4 C 1.53003 * 109.46980 * 293.95477 * 3 2 1 5 5 H 1.08997 * 115.55101 * 330.58624 * 4 3 2 6 6 C 1.53001 * 117.49605 * 116.25199 * 4 3 2 7 7 C 1.53003 * 117.50038 * 184.90906 * 4 3 2 8 8 H 1.08999 * 117.49699 * 0.02562 * 7 4 3 9 9 C 1.53000 * 117.49576 * 144.99749 * 7 4 3 10 10 C 1.53002 * 117.49775 * 248.74775 * 9 7 4 11 11 C 1.53007 * 117.49705 * 180.09217 * 9 7 4 12 12 C 1.46898 * 111.00013 * 123.95405 * 2 1 3 13 13 C 1.53007 * 109.47240 * 72.33949 * 12 2 1 14 14 C 1.50695 * 115.54879 * 40.05110 * 13 12 2 15 15 H 1.08003 * 120.00249 * 265.39605 * 14 13 12 16 16 C 1.37873 * 120.00103 * 85.39807 * 14 13 12 17 17 N 1.31518 * 120.00129 * 4.53585 * 16 14 13 18 18 Si 1.86808 * 120.00263 * 184.53521 * 16 14 13 19 19 H 1.48495 * 109.46672 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47089 * 119.99855 * 18 16 14 21 21 H 1.48492 * 109.47069 * 240.00232 * 18 16 14 22 22 C 1.53000 * 117.49558 * 254.34223 * 13 12 2 23 23 C 1.52995 * 60.00227 * 252.50943 * 22 13 12 24 24 H 1.08995 * 109.47538 * 64.07189 * 1 2 3 25 25 H 1.08999 * 109.47173 * 184.07211 * 1 2 3 26 26 H 1.08999 * 109.46868 * 304.06428 * 1 2 3 27 27 H 1.08997 * 109.47184 * 173.95600 * 3 2 1 28 28 H 1.08996 * 109.47033 * 53.95487 * 3 2 1 29 29 H 1.09007 * 117.49499 * 215.00287 * 6 4 3 30 30 H 1.08995 * 117.49988 * 0.02579 * 6 4 3 31 31 H 1.08997 * 115.55266 * 34.42143 * 9 7 4 32 32 H 1.09001 * 117.49926 * 0.02562 * 10 9 7 33 33 H 1.09006 * 117.49879 * 145.02569 * 10 9 7 34 34 H 1.08993 * 117.49722 * 214.98443 * 11 9 7 35 35 H 1.08997 * 117.49417 * 359.97438 * 11 9 7 36 36 H 1.09007 * 109.46934 * 192.33288 * 12 2 1 37 37 H 1.08994 * 109.47706 * 312.33417 * 12 2 1 38 38 H 0.96998 * 119.99836 * 185.00384 * 17 16 14 39 39 H 1.09000 * 117.49874 * 0.02562 * 22 13 12 40 40 H 1.08998 * 117.49661 * 145.01473 * 22 13 12 41 41 H 1.08998 * 117.50235 * 252.51655 * 23 22 13 42 42 H 1.09007 * 117.49936 * 107.48634 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 1 1.5339 1.3976 -2.1804 6 6 0.7036 3.2720 -1.2499 7 6 2.1901 3.4607 -1.5623 8 1 2.8174 3.8950 -0.7838 9 6 2.5694 3.8303 -2.9977 10 6 4.0556 4.0155 -3.3103 11 6 3.1301 5.2329 -3.2414 12 6 1.9954 -0.7660 1.1376 13 6 1.7696 -2.2597 0.8949 14 6 2.0021 -2.7311 -0.5174 15 1 1.1734 -2.8019 -1.2064 16 6 3.2726 -3.0722 -0.9300 17 7 4.2662 -3.0719 -0.0683 18 14 3.5831 -3.5347 -2.7131 19 1 2.3097 -3.4581 -3.4731 20 1 4.5699 -2.5952 -3.3036 21 1 4.1162 -4.9190 -2.7797 22 6 0.6612 -2.9458 1.6959 23 6 2.1287 -3.2219 2.0290 24 1 -0.3634 0.4493 -0.9242 25 1 -0.3633 -1.0251 0.0730 26 1 -0.3633 0.5756 0.8513 27 1 3.0797 1.3443 0.1082 28 1 1.5611 1.9273 0.8309 29 1 -0.0043 3.4112 -2.0670 30 1 0.3528 3.5826 -0.2657 31 1 1.9415 3.3970 -3.7763 32 1 4.7632 3.8737 -2.4934 33 1 4.4055 3.7045 -4.2948 34 1 2.8714 5.7221 -4.1804 35 1 3.2284 5.8923 -2.3792 36 1 3.0629 -0.5724 1.2431 37 1 1.4796 -0.4639 2.0490 38 1 5.1717 -3.2407 -0.3721 39 1 0.0926 -2.3330 2.3953 40 1 0.0997 -3.7384 1.2012 41 1 2.5328 -4.1960 1.7536 42 1 2.5259 -2.7907 2.9480 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698249482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:25 Heat of formation + Delta-G solvation = 76.451458 kcal Electronic energy + Delta-G solvation = -18505.988248 eV Core-core repulsion = 15874.426517 eV Total energy + Delta-G solvation = -2631.561731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.74518 -37.33699 -35.77590 -34.10150 -31.69870 -27.24111 -26.75216 -25.17233 -23.58073 -22.42372 -21.90607 -20.97633 -20.02366 -19.89544 -18.82706 -15.97058 -15.72964 -15.23765 -14.52263 -14.38468 -14.28425 -13.95247 -13.38484 -13.07670 -12.66532 -12.46927 -11.78162 -11.63605 -11.47804 -11.42581 -11.17742 -11.08911 -10.94113 -10.82147 -10.78178 -10.55597 -10.48319 -10.34533 -9.99403 -9.56714 -9.37633 -9.11878 -8.82300 -8.19414 -7.90665 -7.29901 -5.83231 -3.83413 3.40981 3.48811 3.53352 3.57322 4.26507 4.42000 4.58646 4.79605 4.89061 5.00623 5.18307 5.31181 5.39876 5.43982 5.46188 5.52025 5.60306 5.73870 5.86995 5.92871 5.94529 6.05843 6.09036 6.13044 6.17995 6.21602 6.33004 6.37350 6.39110 6.57053 6.63402 6.67576 6.71128 6.82009 7.04584 7.21169 7.52027 7.63784 8.00626 8.08551 8.13791 8.66099 9.12981 9.78542 11.26855 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.006366 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.212319 B = 4397.347379 C = 5357.166921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.507 5.507 3 C 0.087 3.913 4 C -0.122 4.122 5 H 0.114 0.886 6 C -0.178 4.178 7 C -0.125 4.125 8 H 0.099 0.901 9 C -0.117 4.117 10 C -0.177 4.177 11 C -0.182 4.182 12 C 0.104 3.896 13 C 0.050 3.950 14 C -0.451 4.451 15 H 0.056 0.944 16 C 0.070 3.930 17 N -0.890 5.890 18 Si 0.884 3.116 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.290 1.290 22 C -0.220 4.220 23 C -0.153 4.153 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.004 0.996 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.000 1.000 38 H 0.254 0.746 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 13.031 -2.050 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.229 5.229 3 C -0.042 4.042 4 C -0.141 4.141 5 H 0.132 0.868 6 C -0.215 4.215 7 C -0.143 4.143 8 H 0.118 0.882 9 C -0.135 4.135 10 C -0.214 4.214 11 C -0.219 4.219 12 C -0.023 4.023 13 C 0.049 3.951 14 C -0.489 4.489 15 H 0.074 0.926 16 C -0.131 4.131 17 N -0.528 5.528 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.217 1.217 22 C -0.257 4.257 23 C -0.191 4.191 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.022 0.978 27 H 0.091 0.909 28 H 0.037 0.963 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.555 12.696 -2.456 13.411 hybrid contribution 0.069 0.234 -0.196 0.313 sum -3.486 12.930 -2.652 13.652 Atomic orbital electron populations 1.22267 0.88614 1.01702 0.98561 1.61705 1.06553 1.10029 1.44616 1.21655 0.99895 0.89481 0.93120 1.22422 1.01881 0.89265 1.00507 0.86789 1.23105 0.92450 1.03697 1.02242 1.21794 0.96459 1.00905 0.95171 0.88239 1.21701 0.96569 0.99077 0.96122 1.22936 0.93308 1.02187 1.02956 1.22933 1.05080 0.91122 1.02749 1.21655 0.98420 0.94744 0.87509 1.18859 0.95253 0.88155 0.92798 1.20186 0.93383 1.41320 0.94033 0.92595 1.24848 0.96493 0.95257 0.96500 1.70016 0.99333 1.50716 1.32783 0.86667 0.78141 0.77528 0.86371 1.19918 1.21236 1.21666 1.23085 0.92147 1.04976 1.05506 1.22475 0.94846 1.02600 0.99135 0.92640 0.90910 0.97766 0.90919 0.96267 0.89185 0.89290 0.87939 0.88686 0.88914 0.89132 0.89002 0.91440 0.98170 0.93578 0.92312 0.90701 0.89715 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.19 60.06 0.55 1.23 16 2 N -0.51 -10.35 4.04 -242.93 -0.98 -11.33 16 3 C 0.09 1.51 5.23 -3.82 -0.02 1.49 16 4 C -0.12 -1.86 4.58 -90.62 -0.42 -2.27 16 5 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 6 C -0.18 -2.24 9.90 -26.69 -0.26 -2.50 16 7 C -0.12 -1.61 5.57 -90.58 -0.50 -2.11 16 8 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 9 C -0.12 -1.40 5.85 -90.61 -0.53 -1.92 16 10 C -0.18 -2.01 10.25 -26.69 -0.27 -2.28 16 11 C -0.18 -1.85 10.26 -26.69 -0.27 -2.12 16 12 C 0.10 2.33 5.05 -3.82 -0.02 2.31 16 13 C 0.05 1.23 1.01 -155.66 -0.16 1.07 16 14 C -0.45 -12.25 8.17 -34.44 -0.28 -12.53 16 15 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 16 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 17 N -0.89 -25.53 12.63 55.43 0.70 -24.83 16 18 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.22 -4.85 9.30 -26.73 -0.25 -5.10 16 23 C -0.15 -3.65 9.15 -26.73 -0.24 -3.90 16 24 H 0.05 0.93 7.42 -51.93 -0.39 0.54 16 25 H 0.07 1.43 6.82 -51.93 -0.35 1.08 16 26 H 0.00 0.07 8.09 -51.93 -0.42 -0.35 16 27 H 0.07 1.32 7.86 -51.93 -0.41 0.92 16 28 H 0.02 0.31 7.82 -51.93 -0.41 -0.09 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.63 7.80 -51.93 -0.41 1.22 16 37 H 0.00 0.01 7.85 -51.93 -0.41 -0.40 16 38 H 0.25 7.05 8.32 -40.82 -0.34 6.71 16 39 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 40 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.08 2.19 8.14 -51.93 -0.42 1.77 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -28.10 341.96 -10.75 -38.85 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.82 Total: 2.18 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.78 Total: -26.80 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.28 Total: -36.16 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.10 -10.75 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.300 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds