Wall clock time and date at job start Mon Mar 30 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00125 * 2 1 4 4 C 1.53003 * 109.46980 * 293.95477 * 3 2 1 5 5 H 1.08997 * 115.55101 * 330.58624 * 4 3 2 6 6 C 1.53001 * 117.49605 * 116.25199 * 4 3 2 7 7 C 1.53003 * 117.50038 * 184.90906 * 4 3 2 8 8 H 1.08999 * 117.49699 * 0.02562 * 7 4 3 9 9 C 1.53000 * 117.49576 * 144.99749 * 7 4 3 10 10 C 1.53002 * 117.49775 * 248.74775 * 9 7 4 11 11 C 1.53007 * 117.49705 * 180.09217 * 9 7 4 12 12 C 1.46898 * 111.00013 * 123.95405 * 2 1 3 13 13 C 1.53007 * 109.47240 * 72.33949 * 12 2 1 14 14 C 1.50695 * 115.54879 * 40.05110 * 13 12 2 15 15 H 1.08003 * 120.00249 * 265.39605 * 14 13 12 16 16 C 1.37873 * 120.00103 * 85.39807 * 14 13 12 17 17 N 1.31518 * 120.00129 * 4.53585 * 16 14 13 18 18 Si 1.86808 * 120.00263 * 184.53521 * 16 14 13 19 19 H 1.48495 * 109.46672 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47089 * 119.99855 * 18 16 14 21 21 H 1.48492 * 109.47069 * 240.00232 * 18 16 14 22 22 C 1.53000 * 117.49558 * 254.34223 * 13 12 2 23 23 C 1.52995 * 60.00227 * 252.50943 * 22 13 12 24 24 H 1.08995 * 109.47538 * 64.07189 * 1 2 3 25 25 H 1.08999 * 109.47173 * 184.07211 * 1 2 3 26 26 H 1.08999 * 109.46868 * 304.06428 * 1 2 3 27 27 H 1.08997 * 109.47184 * 173.95600 * 3 2 1 28 28 H 1.08996 * 109.47033 * 53.95487 * 3 2 1 29 29 H 1.09007 * 117.49499 * 215.00287 * 6 4 3 30 30 H 1.08995 * 117.49988 * 0.02579 * 6 4 3 31 31 H 1.08997 * 115.55266 * 34.42143 * 9 7 4 32 32 H 1.09001 * 117.49926 * 0.02562 * 10 9 7 33 33 H 1.09006 * 117.49879 * 145.02569 * 10 9 7 34 34 H 1.08993 * 117.49722 * 214.98443 * 11 9 7 35 35 H 1.08997 * 117.49417 * 359.97438 * 11 9 7 36 36 H 1.09007 * 109.46934 * 192.33288 * 12 2 1 37 37 H 1.08994 * 109.47706 * 312.33417 * 12 2 1 38 38 H 0.96998 * 119.99836 * 185.00384 * 17 16 14 39 39 H 1.09000 * 117.49874 * 0.02562 * 22 13 12 40 40 H 1.08998 * 117.49661 * 145.01473 * 22 13 12 41 41 H 1.08998 * 117.50235 * 252.51655 * 23 22 13 42 42 H 1.09007 * 117.49936 * 107.48634 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 1 1.5339 1.3976 -2.1804 6 6 0.7036 3.2720 -1.2499 7 6 2.1901 3.4607 -1.5623 8 1 2.8174 3.8950 -0.7838 9 6 2.5694 3.8303 -2.9977 10 6 4.0556 4.0155 -3.3103 11 6 3.1301 5.2329 -3.2414 12 6 1.9954 -0.7660 1.1376 13 6 1.7696 -2.2597 0.8949 14 6 2.0021 -2.7311 -0.5174 15 1 1.1734 -2.8019 -1.2064 16 6 3.2726 -3.0722 -0.9300 17 7 4.2662 -3.0719 -0.0683 18 14 3.5831 -3.5347 -2.7131 19 1 2.3097 -3.4581 -3.4731 20 1 4.5699 -2.5952 -3.3036 21 1 4.1162 -4.9190 -2.7797 22 6 0.6612 -2.9458 1.6959 23 6 2.1287 -3.2219 2.0290 24 1 -0.3634 0.4493 -0.9242 25 1 -0.3633 -1.0251 0.0730 26 1 -0.3633 0.5756 0.8513 27 1 3.0797 1.3443 0.1082 28 1 1.5611 1.9273 0.8309 29 1 -0.0043 3.4112 -2.0670 30 1 0.3528 3.5826 -0.2657 31 1 1.9415 3.3970 -3.7763 32 1 4.7632 3.8737 -2.4934 33 1 4.4055 3.7045 -4.2948 34 1 2.8714 5.7221 -4.1804 35 1 3.2284 5.8923 -2.3792 36 1 3.0629 -0.5724 1.2431 37 1 1.4796 -0.4639 2.0490 38 1 5.1717 -3.2407 -0.3721 39 1 0.0926 -2.3330 2.3953 40 1 0.0997 -3.7384 1.2012 41 1 2.5328 -4.1960 1.7536 42 1 2.5259 -2.7907 2.9480 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698249482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:24 Heat of formation + Delta-G solvation = 63.660976 kcal Electronic energy + Delta-G solvation = -18506.542885 eV Core-core repulsion = 15874.426517 eV Total energy + Delta-G solvation = -2632.116368 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91852 -38.88679 -37.10649 -35.45402 -33.80705 -28.70598 -28.33379 -27.23103 -24.58341 -23.53417 -23.08660 -22.83361 -21.18803 -21.02268 -20.72214 -17.87678 -16.86350 -16.60440 -16.28472 -15.96296 -15.71581 -15.51489 -14.78890 -14.53037 -14.08471 -13.85214 -13.45632 -13.13610 -12.99866 -12.80901 -12.61548 -12.44238 -12.38849 -12.32410 -12.24380 -12.05530 -12.03989 -11.88228 -11.45572 -11.18935 -10.85070 -10.61417 -10.28173 -10.15458 -9.81708 -8.83600 -7.96135 -5.99934 1.42340 1.45643 1.55181 2.52641 2.60136 3.16021 3.28463 3.35138 3.57574 3.67035 3.93757 4.02539 4.17606 4.29690 4.35702 4.38579 4.43445 4.49578 4.52421 4.59302 4.70256 4.74895 4.78795 4.80669 4.88948 4.95887 5.00762 5.02717 5.04934 5.14527 5.24720 5.27113 5.28258 5.33251 5.36067 5.45685 5.69336 5.72723 5.92139 6.40420 6.56189 6.65765 7.01413 7.63724 9.13383 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.006366 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.212319 B = 4397.347379 C = 5357.166921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.531 5.531 3 C 0.093 3.907 4 C -0.144 4.144 5 H 0.092 0.908 6 C -0.156 4.156 7 C -0.115 4.115 8 H 0.103 0.897 9 C -0.134 4.134 10 C -0.189 4.189 11 C -0.161 4.161 12 C 0.117 3.883 13 C 0.025 3.975 14 C -0.453 4.453 15 H 0.044 0.956 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.288 1.288 22 C -0.192 4.192 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 14.812 -2.372 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.254 5.254 3 C -0.035 4.035 4 C -0.162 4.162 5 H 0.110 0.890 6 C -0.193 4.193 7 C -0.134 4.134 8 H 0.121 0.879 9 C -0.152 4.152 10 C -0.226 4.226 11 C -0.198 4.198 12 C -0.011 4.011 13 C 0.025 3.975 14 C -0.491 4.491 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.557 5.557 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.215 1.215 22 C -0.229 4.229 23 C -0.199 4.199 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.838 14.480 -2.785 15.519 hybrid contribution 0.439 -0.317 -0.095 0.550 sum -4.399 14.163 -2.880 15.107 Atomic orbital electron populations 1.22197 0.87162 1.01045 0.99999 1.61615 1.08023 1.11772 1.43981 1.21590 0.98670 0.88277 0.94923 1.22179 1.05435 0.90072 0.98562 0.89022 1.23157 0.92334 1.00542 1.03248 1.21838 0.97047 0.98535 0.95939 0.87907 1.21734 0.96938 1.01032 0.95494 1.22999 0.92981 1.03573 1.03016 1.23007 1.02757 0.90215 1.03782 1.21377 0.97036 0.93705 0.88985 1.18987 0.97283 0.89497 0.91762 1.20363 0.92913 1.40574 0.95285 0.93766 1.25437 0.96567 0.95748 0.99551 1.70114 0.99424 1.52110 1.34077 0.85838 0.77897 0.77084 0.82736 1.19506 1.21346 1.21484 1.23048 0.91113 1.04216 1.04492 1.22368 0.96671 1.01324 0.99521 0.91372 0.92614 0.95947 0.92910 0.94771 0.87994 0.88175 0.88126 0.89299 0.88514 0.87553 0.88168 0.94218 0.96631 0.93839 0.89555 0.90816 0.92390 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 9.19 127.69 1.17 2.71 16 2 N -0.53 -21.44 4.04 -922.48 -3.73 -25.17 16 3 C 0.09 3.18 5.23 86.31 0.45 3.63 16 4 C -0.14 -4.23 4.58 -10.79 -0.05 -4.28 16 5 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 6 C -0.16 -3.51 9.90 30.62 0.30 -3.21 16 7 C -0.11 -2.77 5.57 -10.77 -0.06 -2.83 16 8 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 9 C -0.13 -2.99 5.85 -10.79 -0.06 -3.05 16 10 C -0.19 -4.04 10.25 30.62 0.31 -3.73 16 11 C -0.16 -2.86 10.26 30.62 0.31 -2.55 16 12 C 0.12 5.21 5.05 86.31 0.44 5.65 16 13 C 0.03 1.25 1.01 -52.93 -0.05 1.19 16 14 C -0.45 -24.83 8.17 25.60 0.21 -24.62 16 15 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 16 C 0.02 1.39 5.43 84.65 0.46 1.85 16 17 N -0.92 -53.72 12.63 21.45 0.27 -53.45 16 18 Si 0.94 45.36 29.54 68.60 2.03 47.39 16 19 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 22 C -0.19 -8.19 9.30 30.59 0.28 -7.91 16 23 C -0.16 -7.70 9.15 30.59 0.28 -7.42 16 24 H 0.07 2.16 7.42 -2.39 -0.02 2.15 16 25 H 0.05 2.11 6.82 -2.39 -0.02 2.09 16 26 H 0.02 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.05 1.96 7.86 -2.39 -0.02 1.94 16 28 H 0.03 1.05 7.82 -2.39 -0.02 1.03 16 29 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.10 2.06 8.03 -2.39 -0.02 2.04 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.95 7.80 -2.38 -0.02 1.93 16 37 H 0.02 0.64 7.85 -2.39 -0.02 0.62 16 38 H 0.25 14.31 8.32 -92.71 -0.77 13.53 16 39 H 0.09 3.22 8.09 -2.39 -0.02 3.20 16 40 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -59.86 341.96 3.51 -56.35 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.95 Total: 19.46 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 4.00 Total: -44.58 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.46 Total: -78.61 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -59.86 3.51 -56.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.008 kcal (2) G-P(sol) polarization free energy of solvation -59.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds