Wall clock time and date at job start Mon Mar 30 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99712 * 2 1 4 4 C 1.52995 * 109.47338 * 66.04582 * 3 2 1 5 5 H 1.08996 * 115.54982 * 330.58544 * 4 3 2 6 6 C 1.53010 * 117.49726 * 116.25135 * 4 3 2 7 7 C 1.53000 * 117.50210 * 184.90852 * 4 3 2 8 8 H 1.08992 * 117.49966 * 144.99855 * 7 4 3 9 9 C 1.53007 * 117.49729 * 359.97438 * 7 4 3 10 10 C 1.52998 * 117.50153 * 128.62121 * 9 7 4 11 11 C 1.53002 * 117.49959 * 59.99467 * 9 7 4 12 12 C 1.46900 * 110.99877 * 236.04814 * 2 1 3 13 13 C 1.53001 * 109.46738 * 285.56523 * 12 2 1 14 14 C 1.50700 * 115.54757 * 147.99743 * 13 12 2 15 15 H 1.08004 * 119.99996 * 114.54281 * 14 13 12 16 16 C 1.37878 * 119.99804 * 294.54327 * 14 13 12 17 17 N 1.31506 * 120.00215 * 4.97255 * 16 14 13 18 18 Si 1.86803 * 119.99892 * 184.97593 * 16 14 13 19 19 H 1.48504 * 109.47241 * 59.99603 * 18 16 14 20 20 H 1.48501 * 109.47187 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47163 * 300.00201 * 18 16 14 22 22 C 1.53000 * 117.50115 * 2.28429 * 13 12 2 23 23 C 1.53003 * 60.00161 * 252.51303 * 22 13 12 24 24 H 1.08996 * 109.46891 * 52.28290 * 1 2 3 25 25 H 1.08998 * 109.47009 * 172.28123 * 1 2 3 26 26 H 1.08994 * 109.46792 * 292.28567 * 1 2 3 27 27 H 1.08999 * 109.47400 * 306.04389 * 3 2 1 28 28 H 1.09002 * 109.46817 * 186.04503 * 3 2 1 29 29 H 1.08999 * 117.49592 * 215.00320 * 6 4 3 30 30 H 1.09001 * 117.49770 * 359.97438 * 6 4 3 31 31 H 1.08999 * 115.54962 * 274.33003 * 9 7 4 32 32 H 1.09003 * 117.49301 * 359.97438 * 10 9 7 33 33 H 1.08988 * 117.50065 * 145.02122 * 10 9 7 34 34 H 1.08996 * 117.50052 * 214.98454 * 11 9 7 35 35 H 1.09005 * 117.49662 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.47286 * 45.56327 * 12 2 1 37 37 H 1.08996 * 109.46804 * 165.56765 * 12 2 1 38 38 H 0.96996 * 120.00400 * 185.00416 * 17 16 14 39 39 H 1.09001 * 117.49645 * 0.02562 * 22 13 12 40 40 H 1.09003 * 117.49698 * 145.01831 * 22 13 12 41 41 H 1.08994 * 117.49520 * 252.51380 * 23 22 13 42 42 H 1.08989 * 117.49751 * 107.49119 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 1 0.7099 1.7140 1.7881 6 6 2.7806 2.4749 2.2382 7 6 1.9919 3.5369 1.4679 8 1 1.3075 4.1666 2.0361 9 6 2.6894 4.2169 0.2880 10 6 2.0923 5.5287 -0.2252 11 6 1.9467 4.2479 -1.0494 12 6 1.9955 -0.7659 -1.1376 13 6 1.8168 -2.2620 -0.8715 14 6 1.5787 -3.1151 -2.0907 15 1 2.3114 -3.8518 -2.3858 16 6 0.4256 -2.9552 -2.8294 17 7 -0.4199 -1.9939 -2.5289 18 14 0.0643 -4.1043 -4.2573 19 1 -0.0191 -5.5010 -3.7598 20 1 -1.2275 -3.7245 -4.8836 21 1 1.1519 -4.0012 -5.2631 22 6 1.1143 -2.6700 0.4251 23 6 2.6228 -2.8768 0.2746 24 1 -0.3633 0.6287 -0.8129 25 1 -0.3633 -1.0183 -0.1380 26 1 -0.3633 0.3897 0.9509 27 1 1.5611 1.9274 -0.8309 28 1 3.0798 1.3444 -0.1082 29 1 2.6149 2.4061 3.3133 30 1 3.7958 2.2604 1.9045 31 1 3.7740 4.1119 0.2589 32 1 1.2022 5.9071 0.2776 33 1 2.7839 6.2871 -0.5917 34 1 2.5427 4.1637 -1.9581 35 1 0.9614 3.7834 -1.0887 36 1 1.4540 -0.4907 -2.0427 37 1 3.0548 -0.5437 -1.2662 38 1 -1.2646 -1.9258 -3.0007 39 1 0.7790 -1.8725 1.0882 40 1 0.4795 -3.5556 0.3963 41 1 2.9804 -3.8985 0.1468 42 1 3.2802 -2.2156 0.8389 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698249859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:27 Heat of formation + Delta-G solvation = 70.890878 kcal Electronic energy + Delta-G solvation = -18839.424460 eV Core-core repulsion = 16207.621605 eV Total energy + Delta-G solvation = -2631.802855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18775 -39.00533 -36.62762 -35.31174 -33.97082 -28.73877 -28.42003 -27.27661 -24.62654 -23.77677 -23.05888 -22.72826 -21.78340 -20.48783 -19.98719 -17.97874 -16.93322 -16.63323 -16.45048 -16.05942 -15.60256 -15.52225 -14.91076 -14.53359 -14.04217 -13.80531 -13.29714 -13.17008 -12.98703 -12.78565 -12.59956 -12.43293 -12.30975 -12.29403 -12.14539 -11.99281 -11.73337 -11.58767 -11.53096 -11.15444 -10.69438 -10.59675 -10.38831 -10.28129 -9.79390 -8.94257 -8.04137 -6.15674 1.43231 1.44113 1.51000 2.45008 2.70047 3.06744 3.16447 3.39184 3.64370 3.66552 3.99677 4.02388 4.18829 4.22528 4.41697 4.46415 4.56974 4.58850 4.66969 4.71513 4.79297 4.82127 4.84381 4.90601 4.94640 5.00281 5.04627 5.10803 5.15244 5.26333 5.30577 5.32160 5.37946 5.39694 5.46425 5.55847 5.72503 5.78484 5.89153 6.28383 6.52178 6.62818 6.91121 7.49690 8.99682 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.005540 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.410007 B = 5052.888683 C = 5597.533436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.534 5.534 3 C 0.091 3.909 4 C -0.146 4.146 5 H 0.098 0.902 6 C -0.159 4.159 7 C -0.115 4.115 8 H 0.114 0.886 9 C -0.126 4.126 10 C -0.162 4.162 11 C -0.189 4.189 12 C 0.115 3.885 13 C 0.025 3.975 14 C -0.517 4.517 15 H 0.047 0.953 16 C 0.033 3.967 17 N -0.892 5.892 18 Si 0.945 3.055 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.168 4.168 23 C -0.186 4.186 24 H -0.001 1.001 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.043 0.957 38 H 0.258 0.742 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 12.777 6.743 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.257 5.257 3 C -0.037 4.037 4 C -0.165 4.165 5 H 0.117 0.883 6 C -0.196 4.196 7 C -0.134 4.134 8 H 0.132 0.868 9 C -0.144 4.144 10 C -0.199 4.199 11 C -0.226 4.226 12 C -0.013 4.013 13 C 0.024 3.976 14 C -0.555 4.555 15 H 0.065 0.935 16 C -0.168 4.168 17 N -0.529 5.529 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.206 4.206 23 C -0.224 4.224 24 H 0.017 0.983 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.765 12.673 7.059 14.987 hybrid contribution -0.738 -0.559 -1.714 1.948 sum 3.027 12.114 5.345 13.582 Atomic orbital electron populations 1.22272 0.87627 1.02429 0.97925 1.62040 1.07911 1.12633 1.43149 1.21666 0.98725 0.87883 0.95410 1.22238 1.00217 0.96255 0.97778 0.88350 1.23121 0.96240 1.02066 0.98140 1.21905 1.02509 0.90246 0.98699 0.86847 1.21724 0.98377 1.00821 0.93483 1.23052 1.03240 0.90617 1.03015 1.22933 1.01817 1.02734 0.95139 1.21316 0.95924 0.93152 0.90914 1.18955 0.99451 0.91433 0.87735 1.20799 1.05074 1.19320 1.10327 0.93516 1.25545 0.96404 0.96020 0.98875 1.70046 1.09106 1.30793 1.42938 0.85836 0.77257 0.79686 0.80096 1.20210 1.21000 1.20029 1.22730 0.93098 1.00904 1.03833 1.22792 0.94110 1.00062 1.05390 0.98257 0.90765 0.92028 0.95258 0.91945 0.87771 0.88895 0.87547 0.88286 0.87546 0.89045 0.90207 0.95909 0.93816 0.93301 0.88824 0.93450 0.91421 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.88 7.97 127.69 1.02 2.90 16 2 N -0.53 -21.37 3.75 -922.46 -3.46 -24.83 16 3 C 0.09 3.03 4.17 86.30 0.36 3.39 16 4 C -0.15 -4.01 5.68 -10.79 -0.06 -4.07 16 5 H 0.10 2.84 6.48 -2.39 -0.02 2.82 16 6 C -0.16 -3.58 9.90 30.62 0.30 -3.28 16 7 C -0.12 -2.53 5.87 -10.77 -0.06 -2.59 16 8 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 9 C -0.13 -2.67 5.25 -10.79 -0.06 -2.72 16 10 C -0.16 -2.95 10.25 30.60 0.31 -2.64 16 11 C -0.19 -4.35 8.44 30.60 0.26 -4.09 16 12 C 0.11 5.37 4.89 86.30 0.42 5.79 16 13 C 0.03 1.25 1.69 -52.93 -0.09 1.16 16 14 C -0.52 -28.56 8.80 25.60 0.23 -28.33 16 15 H 0.05 2.60 7.82 -2.91 -0.02 2.57 16 16 C 0.03 1.77 5.33 84.66 0.45 2.23 16 17 N -0.89 -49.13 11.42 21.45 0.24 -48.88 16 18 Si 0.94 43.29 29.54 68.60 2.03 45.31 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 C -0.17 -7.92 8.07 30.60 0.25 -7.67 16 23 C -0.19 -8.32 9.94 30.60 0.30 -8.02 16 24 H 0.00 -0.05 8.03 -2.39 -0.02 -0.07 16 25 H 0.07 3.52 5.04 -2.39 -0.01 3.51 16 26 H 0.06 2.19 6.59 -2.39 -0.02 2.18 16 27 H 0.03 1.03 5.53 -2.39 -0.01 1.01 16 28 H 0.06 2.06 7.57 -2.39 -0.02 2.04 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.10 8.03 -2.39 -0.02 2.08 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.11 7.30 -2.38 -0.02 2.10 16 36 H 0.02 1.21 6.80 -2.39 -0.02 1.19 16 37 H 0.04 1.96 7.76 -2.39 -0.02 1.94 16 38 H 0.26 13.75 8.32 -92.71 -0.77 12.98 16 39 H 0.09 4.21 5.59 -2.39 -0.01 4.20 16 40 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -56.40 326.46 3.42 -52.98 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.97 Total: 23.37 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 3.63 Total: -47.95 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -3.22 Total: -73.71 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -56.40 3.42 -52.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.874 kcal (2) G-P(sol) polarization free energy of solvation -56.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds