Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99761 * 2 1 4 4 C 1.52989 * 109.47088 * 66.04885 * 3 2 1 5 5 H 1.09004 * 115.56640 * 29.29739 * 4 3 2 6 6 C 1.53008 * 117.49861 * 243.60180 * 4 3 2 7 7 C 1.52997 * 60.00110 * 252.50878 * 6 4 3 8 8 H 1.08995 * 117.50404 * 252.50320 * 7 6 4 9 9 C 1.53006 * 117.49372 * 107.51034 * 7 6 4 10 10 C 1.53001 * 117.49458 * 180.13808 * 9 7 6 11 11 C 1.53000 * 117.49513 * 111.47945 * 9 7 6 12 12 C 1.46902 * 110.99642 * 236.04890 * 2 1 3 13 13 C 1.53001 * 109.46737 * 285.53572 * 12 2 1 14 14 C 1.50707 * 115.54779 * 147.98109 * 13 12 2 15 15 H 1.08003 * 119.99943 * 114.54171 * 14 13 12 16 16 C 1.37878 * 119.99972 * 294.54454 * 14 13 12 17 17 N 1.31514 * 119.99963 * 4.74927 * 16 14 13 18 18 Si 1.86800 * 119.99951 * 184.75542 * 16 14 13 19 19 H 1.48499 * 109.47142 * 59.99788 * 18 16 14 20 20 H 1.48497 * 109.46919 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46789 * 299.99809 * 18 16 14 22 22 C 1.52994 * 117.50303 * 2.27344 * 13 12 2 23 23 C 1.52997 * 117.49923 * 293.64787 * 13 12 2 24 24 H 1.09001 * 109.47100 * 52.44250 * 1 2 3 25 25 H 1.09000 * 109.47271 * 172.44192 * 1 2 3 26 26 H 1.09003 * 109.46850 * 292.44705 * 1 2 3 27 27 H 1.08999 * 109.47043 * 306.04593 * 3 2 1 28 28 H 1.09006 * 109.46811 * 186.04715 * 3 2 1 29 29 H 1.09002 * 117.49435 * 145.02012 * 6 4 3 30 30 H 1.08993 * 117.49491 * 0.02562 * 6 4 3 31 31 H 1.08998 * 115.54943 * 325.80582 * 9 7 6 32 32 H 1.08999 * 117.50203 * 0.02562 * 10 9 7 33 33 H 1.09005 * 117.49921 * 145.02544 * 10 9 7 34 34 H 1.09002 * 117.49738 * 214.97339 * 11 9 7 35 35 H 1.08998 * 117.50433 * 359.97438 * 11 9 7 36 36 H 1.09001 * 109.47234 * 45.53710 * 12 2 1 37 37 H 1.09004 * 109.46876 * 165.54328 * 12 2 1 38 38 H 0.96994 * 119.99794 * 185.01004 * 17 16 14 39 39 H 1.09000 * 117.49495 * 359.97438 * 22 13 12 40 40 H 1.09002 * 117.50154 * 145.01558 * 22 13 12 41 41 H 1.09008 * 117.49883 * 214.98046 * 23 13 12 42 42 H 1.08995 * 117.50287 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3182 5 1 1.5321 1.3975 2.1801 6 6 0.7063 3.2741 1.2496 7 6 2.1922 3.4597 1.5633 8 1 2.4617 3.7224 2.5862 9 6 3.0739 4.0692 0.4714 10 6 4.5605 4.2519 0.7839 11 6 3.6364 5.4705 0.7180 12 6 1.9954 -0.7659 -1.1377 13 6 1.8174 -2.2620 -0.8712 14 6 1.5789 -3.1155 -2.0902 15 1 2.3116 -3.8519 -2.3856 16 6 0.4253 -2.9561 -2.8283 17 7 -0.4225 -1.9976 -2.5247 18 14 0.0665 -4.1015 -4.2596 19 1 -0.0135 -5.5000 -3.7664 20 1 -1.2262 -3.7229 -4.8846 21 1 1.1538 -3.9927 -5.2652 22 6 1.1157 -2.6701 0.4257 23 6 2.6241 -2.8764 0.2744 24 1 -0.3633 0.6264 -0.8147 25 1 -0.3634 -1.0187 -0.1352 26 1 -0.3633 0.3924 0.9498 27 1 1.5611 1.9273 -0.8309 28 1 3.0798 1.3444 -0.1083 29 1 -0.0018 3.4145 2.0663 30 1 0.3567 3.5855 0.2653 31 1 2.8030 3.8084 -0.5517 32 1 4.9104 3.9374 1.7672 33 1 5.2676 4.1117 -0.0337 34 1 3.7361 6.1315 -0.1430 35 1 3.3781 5.9584 1.6578 36 1 1.4536 -0.4910 -2.0426 37 1 3.0547 -0.5434 -1.2665 38 1 -1.2675 -1.9302 -2.9962 39 1 0.7812 -1.8727 1.0893 40 1 0.4811 -3.5559 0.3974 41 1 2.9820 -3.8981 0.1467 42 1 3.2814 -2.2148 0.8386 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698249861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = 79.281590 kcal Electronic energy + Delta-G solvation = -18660.542853 eV Core-core repulsion = 16029.103846 eV Total energy + Delta-G solvation = -2631.439007 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.91340 -37.42123 -35.58963 -33.80947 -31.92561 -26.98155 -26.85272 -25.24396 -23.71080 -22.44904 -21.84767 -20.92132 -20.82447 -18.84367 -18.57916 -16.02391 -15.95538 -15.30033 -14.72747 -14.40281 -14.20330 -13.72162 -13.52977 -13.07128 -12.73634 -12.15646 -11.68851 -11.65183 -11.39394 -11.28032 -11.22229 -11.01990 -10.91175 -10.89237 -10.67479 -10.50048 -10.48803 -10.24082 -9.87859 -9.54869 -9.34430 -9.15919 -8.68715 -8.43431 -7.87800 -7.31436 -5.99881 -4.04938 3.31731 3.36599 3.39712 3.54828 4.24007 4.41955 4.51933 4.69321 4.89225 4.97259 5.21495 5.26987 5.30141 5.38597 5.50243 5.57466 5.57653 5.76909 5.82690 5.95685 6.04472 6.06043 6.15028 6.18486 6.29718 6.34379 6.47493 6.55803 6.58730 6.64844 6.75394 6.94337 6.97917 7.19736 7.33037 7.38031 7.63522 7.67974 7.89865 8.08332 8.18591 8.59400 8.96479 9.58682 11.06491 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.004913 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.463028 B = 5697.964165 C = 5783.595097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.537 5.537 3 C 0.088 3.912 4 C -0.124 4.124 5 H 0.109 0.891 6 C -0.176 4.176 7 C -0.125 4.125 8 H 0.099 0.901 9 C -0.117 4.117 10 C -0.177 4.177 11 C -0.182 4.182 12 C 0.100 3.900 13 C 0.051 3.949 14 C -0.492 4.492 15 H 0.057 0.943 16 C 0.072 3.928 17 N -0.878 5.878 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.175 4.175 23 C -0.204 4.204 24 H 0.013 0.987 25 H 0.101 0.899 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.259 0.741 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 11.695 6.468 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.261 5.261 3 C -0.041 4.041 4 C -0.142 4.142 5 H 0.127 0.873 6 C -0.213 4.213 7 C -0.144 4.144 8 H 0.117 0.883 9 C -0.135 4.135 10 C -0.214 4.214 11 C -0.219 4.219 12 C -0.027 4.027 13 C 0.050 3.950 14 C -0.530 4.530 15 H 0.075 0.925 16 C -0.131 4.131 17 N -0.515 5.515 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.212 4.212 23 C -0.242 4.242 24 H 0.032 0.968 25 H 0.119 0.881 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.966 11.586 6.776 13.996 hybrid contribution -0.610 -0.180 -1.460 1.592 sum 3.356 11.406 5.316 13.024 Atomic orbital electron populations 1.22415 0.87101 1.04294 0.97403 1.62081 1.08500 1.10523 1.44954 1.21614 0.99272 0.89949 0.93257 1.22393 1.02196 0.89180 1.00472 0.87254 1.23078 0.92180 1.03411 1.02648 1.21792 0.94719 1.00099 0.97761 0.88288 1.21702 0.94499 0.98373 0.98955 1.22922 0.93054 1.02362 1.03047 1.22933 1.04948 0.91069 1.02961 1.21638 0.96247 0.93554 0.91311 1.18845 0.97694 0.90602 0.87864 1.20553 1.04765 1.18748 1.08957 0.92489 1.24933 0.96516 0.94777 0.96840 1.69937 1.09036 1.30280 1.42268 0.86736 0.77442 0.81464 0.82777 1.20356 1.21374 1.20330 1.22857 0.92640 1.01461 1.04290 1.22800 0.94530 0.99897 1.06936 0.96844 0.88065 0.94391 0.95791 0.91373 0.89205 0.89090 0.87770 0.88839 0.88905 0.89090 0.89029 0.92502 0.94137 0.93116 0.89694 0.91752 0.91538 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 7.98 60.07 0.48 1.22 16 2 N -0.54 -10.81 3.75 -242.91 -0.91 -11.72 16 3 C 0.09 1.49 4.03 -3.83 -0.02 1.47 16 4 C -0.12 -1.79 4.93 -90.62 -0.45 -2.24 16 5 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 6 C -0.18 -2.25 9.90 -26.73 -0.26 -2.51 16 7 C -0.13 -1.52 5.85 -90.62 -0.53 -2.05 16 8 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 9 C -0.12 -1.37 5.09 -90.62 -0.46 -1.83 16 10 C -0.18 -1.85 10.25 -26.69 -0.27 -2.12 16 11 C -0.18 -1.80 10.25 -26.69 -0.27 -2.07 16 12 C 0.10 2.30 4.89 -3.82 -0.02 2.29 16 13 C 0.05 1.26 1.69 -155.66 -0.26 1.00 16 14 C -0.49 -13.40 8.80 -34.44 -0.30 -13.70 16 15 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 16 C 0.07 1.93 5.33 -17.82 -0.09 1.84 16 17 N -0.88 -23.82 11.43 55.43 0.63 -23.19 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.17 -4.11 8.07 -26.73 -0.22 -4.33 16 23 C -0.20 -4.64 9.94 -26.73 -0.27 -4.90 16 24 H 0.01 0.28 8.03 -51.93 -0.42 -0.14 16 25 H 0.10 2.38 5.04 -51.93 -0.26 2.12 16 26 H 0.04 0.70 7.53 -51.93 -0.39 0.31 16 27 H 0.02 0.42 7.52 -51.93 -0.39 0.03 16 28 H 0.07 1.15 7.72 -51.93 -0.40 0.75 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 31 H 0.10 1.31 7.35 -51.93 -0.38 0.93 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.47 6.80 -51.93 -0.35 1.12 16 37 H 0.04 0.90 7.76 -51.93 -0.40 0.50 16 38 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 39 H 0.08 1.92 5.60 -51.93 -0.29 1.63 16 40 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.49 8.14 -51.92 -0.42 1.06 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -26.57 332.00 -10.72 -37.29 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.48 Total: 4.66 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.95 Total: -27.94 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.28 Total: -34.91 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.57 -10.72 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.572 kcal (2) G-P(sol) polarization free energy of solvation -26.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds