Wall clock time and date at job start Mon Mar 30 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99761 * 2 1 4 4 C 1.52989 * 109.47088 * 66.04885 * 3 2 1 5 5 H 1.09004 * 115.56640 * 29.29739 * 4 3 2 6 6 C 1.53008 * 117.49861 * 243.60180 * 4 3 2 7 7 C 1.52997 * 60.00110 * 252.50878 * 6 4 3 8 8 H 1.08995 * 117.50404 * 252.50320 * 7 6 4 9 9 C 1.53006 * 117.49372 * 107.51034 * 7 6 4 10 10 C 1.53001 * 117.49458 * 180.13808 * 9 7 6 11 11 C 1.53000 * 117.49513 * 111.47945 * 9 7 6 12 12 C 1.46902 * 110.99642 * 236.04890 * 2 1 3 13 13 C 1.53001 * 109.46737 * 285.53572 * 12 2 1 14 14 C 1.50707 * 115.54779 * 147.98109 * 13 12 2 15 15 H 1.08003 * 119.99943 * 114.54171 * 14 13 12 16 16 C 1.37878 * 119.99972 * 294.54454 * 14 13 12 17 17 N 1.31514 * 119.99963 * 4.74927 * 16 14 13 18 18 Si 1.86800 * 119.99951 * 184.75542 * 16 14 13 19 19 H 1.48499 * 109.47142 * 59.99788 * 18 16 14 20 20 H 1.48497 * 109.46919 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46789 * 299.99809 * 18 16 14 22 22 C 1.52994 * 117.50303 * 2.27344 * 13 12 2 23 23 C 1.52997 * 117.49923 * 293.64787 * 13 12 2 24 24 H 1.09001 * 109.47100 * 52.44250 * 1 2 3 25 25 H 1.09000 * 109.47271 * 172.44192 * 1 2 3 26 26 H 1.09003 * 109.46850 * 292.44705 * 1 2 3 27 27 H 1.08999 * 109.47043 * 306.04593 * 3 2 1 28 28 H 1.09006 * 109.46811 * 186.04715 * 3 2 1 29 29 H 1.09002 * 117.49435 * 145.02012 * 6 4 3 30 30 H 1.08993 * 117.49491 * 0.02562 * 6 4 3 31 31 H 1.08998 * 115.54943 * 325.80582 * 9 7 6 32 32 H 1.08999 * 117.50203 * 0.02562 * 10 9 7 33 33 H 1.09005 * 117.49921 * 145.02544 * 10 9 7 34 34 H 1.09002 * 117.49738 * 214.97339 * 11 9 7 35 35 H 1.08998 * 117.50433 * 359.97438 * 11 9 7 36 36 H 1.09001 * 109.47234 * 45.53710 * 12 2 1 37 37 H 1.09004 * 109.46876 * 165.54328 * 12 2 1 38 38 H 0.96994 * 119.99794 * 185.01004 * 17 16 14 39 39 H 1.09000 * 117.49495 * 359.97438 * 22 13 12 40 40 H 1.09002 * 117.50154 * 145.01558 * 22 13 12 41 41 H 1.09008 * 117.49883 * 214.98046 * 23 13 12 42 42 H 1.08995 * 117.50287 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3182 5 1 1.5321 1.3975 2.1801 6 6 0.7063 3.2741 1.2496 7 6 2.1922 3.4597 1.5633 8 1 2.4617 3.7224 2.5862 9 6 3.0739 4.0692 0.4714 10 6 4.5605 4.2519 0.7839 11 6 3.6364 5.4705 0.7180 12 6 1.9954 -0.7659 -1.1377 13 6 1.8174 -2.2620 -0.8712 14 6 1.5789 -3.1155 -2.0902 15 1 2.3116 -3.8519 -2.3856 16 6 0.4253 -2.9561 -2.8283 17 7 -0.4225 -1.9976 -2.5247 18 14 0.0665 -4.1015 -4.2596 19 1 -0.0135 -5.5000 -3.7664 20 1 -1.2262 -3.7229 -4.8846 21 1 1.1538 -3.9927 -5.2652 22 6 1.1157 -2.6701 0.4257 23 6 2.6241 -2.8764 0.2744 24 1 -0.3633 0.6264 -0.8147 25 1 -0.3634 -1.0187 -0.1352 26 1 -0.3633 0.3924 0.9498 27 1 1.5611 1.9273 -0.8309 28 1 3.0798 1.3444 -0.1083 29 1 -0.0018 3.4145 2.0663 30 1 0.3567 3.5855 0.2653 31 1 2.8030 3.8084 -0.5517 32 1 4.9104 3.9374 1.7672 33 1 5.2676 4.1117 -0.0337 34 1 3.7361 6.1315 -0.1430 35 1 3.3781 5.9584 1.6578 36 1 1.4536 -0.4910 -2.0426 37 1 3.0547 -0.5434 -1.2665 38 1 -1.2675 -1.9302 -2.9962 39 1 0.7812 -1.8727 1.0893 40 1 0.4811 -3.5559 0.3974 41 1 2.9820 -3.8981 0.1467 42 1 3.2814 -2.2148 0.8386 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698249861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:29 Heat of formation + Delta-G solvation = 67.903533 kcal Electronic energy + Delta-G solvation = -18661.036242 eV Core-core repulsion = 16029.103846 eV Total energy + Delta-G solvation = -2631.932396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10997 -38.98783 -36.80465 -35.27541 -33.96995 -28.69077 -28.43388 -27.24219 -24.64852 -23.57662 -23.07994 -22.73348 -21.98998 -20.50640 -19.94784 -17.97947 -17.05436 -16.66997 -16.37728 -16.15061 -15.54573 -15.26700 -14.93754 -14.55136 -14.03848 -13.77788 -13.23281 -13.16461 -13.01761 -12.79365 -12.66266 -12.46953 -12.35088 -12.26724 -12.13233 -12.08309 -11.91327 -11.72933 -11.40681 -11.16028 -10.70834 -10.57352 -10.41340 -10.19491 -9.79501 -9.01720 -8.04469 -6.16115 1.43176 1.43986 1.50932 2.44850 2.61366 3.11717 3.29708 3.33893 3.60436 3.65673 3.94665 4.03656 4.16513 4.36710 4.40459 4.42570 4.48762 4.54157 4.63659 4.69213 4.79427 4.82763 4.83211 4.90204 4.93351 4.97828 5.06040 5.10868 5.15959 5.25584 5.30554 5.31400 5.38938 5.41572 5.45865 5.54382 5.71588 5.78496 5.88625 6.27373 6.50812 6.61431 6.90771 7.49397 8.99458 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.004913 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.463028 B = 5697.964165 C = 5783.595097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.533 5.533 3 C 0.094 3.906 4 C -0.141 4.141 5 H 0.106 0.894 6 C -0.172 4.172 7 C -0.104 4.104 8 H 0.116 0.884 9 C -0.139 4.139 10 C -0.176 4.176 11 C -0.167 4.167 12 C 0.112 3.888 13 C 0.024 3.976 14 C -0.518 4.518 15 H 0.047 0.953 16 C 0.033 3.967 17 N -0.892 5.892 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.168 4.168 23 C -0.186 4.186 24 H -0.003 1.003 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.022 0.978 37 H 0.045 0.955 38 H 0.258 0.742 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 12.815 7.502 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.256 5.256 3 C -0.034 4.034 4 C -0.159 4.159 5 H 0.124 0.876 6 C -0.209 4.209 7 C -0.122 4.122 8 H 0.134 0.866 9 C -0.158 4.158 10 C -0.213 4.213 11 C -0.204 4.204 12 C -0.015 4.015 13 C 0.024 3.976 14 C -0.556 4.556 15 H 0.065 0.935 16 C -0.169 4.169 17 N -0.530 5.530 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.205 4.205 23 C -0.223 4.223 24 H 0.016 0.984 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.523 12.712 7.817 15.593 hybrid contribution -0.755 -0.498 -1.785 2.001 sum 3.768 12.214 6.031 14.134 Atomic orbital electron populations 1.22218 0.87374 1.02241 0.98000 1.62070 1.08124 1.12315 1.43119 1.21585 0.98999 0.88115 0.94683 1.22207 1.04946 0.90118 0.98665 0.87606 1.23122 0.93055 1.01821 1.02886 1.21841 0.94237 0.97441 0.98703 0.86585 1.21682 0.95529 1.00457 0.98089 1.22998 0.92244 1.02615 1.03462 1.23012 1.03253 0.90314 1.03833 1.21347 0.96034 0.93236 0.90917 1.18947 0.99539 0.91370 0.87785 1.20809 1.05050 1.19338 1.10359 0.93475 1.25551 0.96383 0.96015 0.98905 1.70052 1.09011 1.30962 1.42930 0.85829 0.77252 0.79674 0.80089 1.20174 1.21006 1.20018 1.22731 0.93117 1.00923 1.03774 1.22800 0.94103 1.00091 1.05331 0.98411 0.90878 0.91966 0.96783 0.91348 0.87621 0.89882 0.89350 0.88205 0.88686 0.88284 0.87827 0.95951 0.93653 0.93300 0.88795 0.93424 0.91393 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.06 7.98 127.69 1.02 3.08 16 2 N -0.53 -21.36 3.75 -922.44 -3.46 -24.82 16 3 C 0.09 3.16 4.03 86.30 0.35 3.51 16 4 C -0.14 -3.85 4.93 -10.79 -0.05 -3.90 16 5 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 6 C -0.17 -4.06 9.90 30.60 0.30 -3.76 16 7 C -0.10 -2.29 5.85 -10.79 -0.06 -2.35 16 8 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 9 C -0.14 -3.01 5.09 -10.79 -0.05 -3.06 16 10 C -0.18 -3.29 10.25 30.62 0.31 -2.97 16 11 C -0.17 -2.85 10.25 30.62 0.31 -2.54 16 12 C 0.11 5.27 4.89 86.30 0.42 5.70 16 13 C 0.02 1.22 1.69 -52.93 -0.09 1.13 16 14 C -0.52 -28.60 8.80 25.60 0.23 -28.37 16 15 H 0.05 2.62 7.82 -2.91 -0.02 2.59 16 16 C 0.03 1.77 5.33 84.65 0.45 2.22 16 17 N -0.89 -49.29 11.43 21.45 0.25 -49.04 16 18 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.17 -7.89 8.07 30.59 0.25 -7.64 16 23 C -0.19 -8.28 9.94 30.59 0.30 -7.98 16 24 H 0.00 -0.12 8.03 -2.39 -0.02 -0.14 16 25 H 0.07 3.47 5.04 -2.39 -0.01 3.46 16 26 H 0.06 2.23 7.53 -2.39 -0.02 2.22 16 27 H 0.01 0.50 7.52 -2.39 -0.02 0.48 16 28 H 0.07 2.27 7.72 -2.38 -0.02 2.25 16 29 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 31 H 0.09 2.18 7.35 -2.39 -0.02 2.17 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.70 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.02 1.19 6.80 -2.39 -0.02 1.17 16 37 H 0.05 2.03 7.76 -2.39 -0.02 2.01 16 38 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 39 H 0.09 4.20 5.60 -2.39 -0.01 4.19 16 40 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 41 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 42 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -56.47 332.00 3.46 -53.01 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.96 Total: 22.46 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 3.69 Total: -46.94 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -3.21 Total: -73.86 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -56.47 3.46 -53.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.915 kcal (2) G-P(sol) polarization free energy of solvation -56.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds