Wall clock time and date at job start Mon Mar 30 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00238 * 2 1 4 4 C 1.53002 * 109.46821 * 293.95659 * 3 2 1 5 5 H 1.09003 * 115.54946 * 29.41495 * 4 3 2 6 6 C 1.52995 * 117.49926 * 243.74322 * 4 3 2 7 7 C 1.52997 * 117.49763 * 175.08159 * 4 3 2 8 8 H 1.09001 * 117.50097 * 0.02562 * 7 4 3 9 9 C 1.53001 * 117.50158 * 214.99981 * 7 4 3 10 10 C 1.53002 * 117.49602 * 128.62013 * 9 7 4 11 11 C 1.52998 * 60.00154 * 252.51511 * 10 9 7 12 12 C 1.46901 * 111.00237 * 123.95474 * 2 1 3 13 13 C 1.52997 * 109.47111 * 71.44254 * 12 2 1 14 14 C 1.50695 * 115.55222 * 54.74023 * 13 12 2 15 15 H 1.08003 * 119.99878 * 249.90597 * 14 13 12 16 16 C 1.37876 * 120.00437 * 69.90627 * 14 13 12 17 17 N 1.31516 * 119.99698 * 355.36679 * 16 14 13 18 18 Si 1.86797 * 120.00213 * 175.36241 * 16 14 13 19 19 H 1.48497 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47359 * 239.99980 * 18 16 14 21 21 H 1.48507 * 109.46757 * 120.00039 * 18 16 14 22 22 C 1.53007 * 117.51564 * 200.43915 * 13 12 2 23 23 C 1.53005 * 60.00002 * 107.47786 * 22 13 12 24 24 H 1.09004 * 109.46958 * 301.00387 * 1 2 3 25 25 H 1.08993 * 109.47511 * 61.00676 * 1 2 3 26 26 H 1.08999 * 109.46805 * 181.00740 * 1 2 3 27 27 H 1.08996 * 109.46718 * 53.95048 * 3 2 1 28 28 H 1.08992 * 109.47718 * 173.95665 * 3 2 1 29 29 H 1.08996 * 117.49953 * 359.97438 * 6 4 3 30 30 H 1.09004 * 117.49905 * 145.01890 * 6 4 3 31 31 H 1.09001 * 115.55567 * 274.33783 * 9 7 4 32 32 H 1.08997 * 117.50310 * 0.02562 * 10 9 7 33 33 H 1.09007 * 117.49529 * 145.02595 * 10 9 7 34 34 H 1.08997 * 117.49996 * 252.50906 * 11 10 9 35 35 H 1.08995 * 117.49747 * 107.49278 * 11 10 9 36 36 H 1.08992 * 109.47130 * 311.43434 * 12 2 1 37 37 H 1.09011 * 109.47012 * 191.44275 * 12 2 1 38 38 H 0.96997 * 119.99933 * 5.17408 * 17 16 14 39 39 H 1.08993 * 117.49761 * 214.96534 * 22 13 12 40 40 H 1.09005 * 117.49640 * 359.97438 * 22 13 12 41 41 H 1.09002 * 117.49891 * 252.51410 * 23 22 13 42 42 H 1.08998 * 117.49694 * 107.48431 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 1 0.7098 1.7139 -1.7881 6 6 2.7804 2.4749 -2.2383 7 6 1.9918 3.5368 -1.4678 8 1 2.4886 4.0213 -0.6273 9 6 1.0311 4.4209 -2.2656 10 6 0.5542 5.7179 -1.6088 11 6 -0.4077 4.5375 -1.7583 12 6 1.9955 -0.7660 1.1376 13 6 1.7497 -2.2581 0.9052 14 6 2.2848 -2.8109 -0.3905 15 1 1.6026 -3.1130 -1.1714 16 6 3.6453 -2.9311 -0.5792 17 7 4.4781 -2.4797 0.3331 18 14 4.3057 -3.7353 -2.1306 19 1 3.1712 -4.1548 -2.9920 20 1 5.1165 -4.9243 -1.7651 21 1 5.1543 -2.7651 -2.8681 22 6 1.7723 -3.1771 2.1283 23 6 0.4448 -2.8509 1.4410 24 1 -0.3633 0.5294 0.8809 25 1 -0.3634 0.4981 -0.8988 26 1 -0.3633 -1.0275 0.0181 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3445 0.1082 29 1 3.7957 2.2612 -1.9042 30 1 2.6146 2.4063 -3.3134 31 1 1.1866 4.4302 -3.3444 32 1 0.9252 5.9415 -0.6086 33 1 0.3962 6.5810 -2.2556 34 1 -1.1986 4.6241 -2.5034 35 1 -0.6698 3.9845 -0.8564 36 1 1.4908 -0.4525 2.0514 37 1 3.0661 -0.5847 1.2333 38 1 4.1366 -2.1307 1.1712 39 1 2.1742 -4.1816 1.9956 40 1 1.9628 -2.7188 3.0988 41 1 -0.2382 -2.1779 1.9592 42 1 -0.0265 -3.6408 0.8561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698249862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:33 Heat of formation + Delta-G solvation = 73.882850 kcal Electronic energy + Delta-G solvation = -18627.714471 eV Core-core repulsion = 15996.041357 eV Total energy + Delta-G solvation = -2631.673114 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.83322 -37.59161 -35.79274 -34.16182 -31.80334 -27.23611 -26.92022 -24.72137 -23.57457 -22.53914 -22.18443 -21.25048 -20.09741 -19.60397 -19.05927 -16.47052 -15.87823 -15.27303 -14.65661 -14.54396 -14.11918 -13.67642 -13.65097 -13.07020 -12.82706 -12.44103 -12.09751 -11.84765 -11.64915 -11.37949 -11.14297 -11.08736 -10.85680 -10.70045 -10.64793 -10.59825 -10.49901 -10.34747 -10.02194 -9.66603 -9.44996 -9.20310 -8.48698 -8.35786 -8.09588 -7.36445 -6.15835 -3.85213 3.52722 3.56365 3.60093 3.69731 4.09028 4.44284 4.64635 4.76848 4.86041 4.92822 5.14108 5.21609 5.28325 5.44151 5.51980 5.54342 5.56595 5.79144 5.80957 5.86817 5.90972 5.96333 6.03749 6.06907 6.10560 6.15719 6.20977 6.22907 6.37110 6.40149 6.43719 6.55400 6.59317 6.67945 6.82053 6.91146 7.28013 7.34607 7.89890 8.00608 8.45975 8.60487 9.05699 9.84784 11.22161 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.005917 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.789646 B = 4731.200985 C = 5485.475594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.506 5.506 3 C 0.087 3.913 4 C -0.125 4.125 5 H 0.107 0.893 6 C -0.162 4.162 7 C -0.134 4.134 8 H 0.100 0.900 9 C -0.118 4.118 10 C -0.180 4.180 11 C -0.178 4.178 12 C 0.097 3.903 13 C 0.038 3.962 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.028 3.972 17 N -0.916 5.916 18 Si 1.070 2.930 19 H -0.291 1.291 20 H -0.291 1.291 21 H -0.289 1.289 22 C -0.192 4.192 23 C -0.199 4.199 24 H 0.005 0.995 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H -0.001 1.001 37 H 0.074 0.926 38 H 0.270 0.730 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 12.120 -2.263 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.228 5.228 3 C -0.042 4.042 4 C -0.143 4.143 5 H 0.125 0.875 6 C -0.199 4.199 7 C -0.153 4.153 8 H 0.119 0.881 9 C -0.136 4.136 10 C -0.217 4.217 11 C -0.215 4.215 12 C -0.031 4.031 13 C 0.037 3.963 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.900 3.100 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.216 1.216 22 C -0.231 4.231 23 C -0.237 4.237 24 H 0.024 0.976 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.017 0.983 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.209 11.520 -3.513 13.122 hybrid contribution -1.749 0.768 1.643 2.520 sum -6.958 12.288 -1.870 14.244 Atomic orbital electron populations 1.22394 0.88874 1.02119 0.98464 1.61627 1.06308 1.10462 1.44439 1.21670 0.99878 0.89037 0.93567 1.22366 0.99880 0.93811 0.98252 0.87491 1.23086 0.97012 1.01849 0.97959 1.21885 1.01650 0.90281 1.01452 0.88149 1.21734 0.95051 0.98268 0.98525 1.22955 1.04578 0.92025 1.02125 1.22943 0.92896 1.02199 1.03433 1.21765 0.99183 0.94477 0.87658 1.19109 0.94352 0.88962 0.93904 1.21113 0.93599 1.43742 0.98894 0.93283 1.25576 0.93344 0.95419 1.03253 1.70699 1.37731 1.38835 1.08033 0.83532 0.75174 0.76202 0.75122 1.21733 1.21816 1.21552 1.22891 1.01230 1.02054 0.96892 1.22827 0.91133 1.04068 1.05622 0.97612 0.92544 0.90695 0.96108 0.90998 0.88643 0.89092 0.87911 0.88952 0.89114 0.89098 0.88718 0.98274 0.90736 0.91819 0.90011 0.91947 0.91851 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.13 60.06 0.55 1.10 16 2 N -0.51 -10.53 4.41 -242.92 -1.07 -11.60 16 3 C 0.09 1.55 5.23 -3.82 -0.02 1.53 16 4 C -0.12 -1.93 5.34 -90.62 -0.48 -2.41 16 5 H 0.11 1.71 6.39 -51.93 -0.33 1.37 16 6 C -0.16 -2.35 9.90 -26.70 -0.26 -2.62 16 7 C -0.13 -1.74 5.59 -90.58 -0.51 -2.25 16 8 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 9 C -0.12 -1.33 5.87 -90.62 -0.53 -1.86 16 10 C -0.18 -1.76 10.25 -26.73 -0.27 -2.04 16 11 C -0.18 -1.87 10.18 -26.73 -0.27 -2.14 16 12 C 0.10 2.21 4.65 -3.83 -0.02 2.19 16 13 C 0.04 0.92 0.66 -155.66 -0.10 0.82 16 14 C -0.54 -14.80 8.50 -34.44 -0.29 -15.09 16 15 H 0.05 1.40 7.82 -52.48 -0.41 0.99 16 16 C 0.03 0.79 5.44 -17.82 -0.10 0.69 16 17 N -0.92 -27.02 13.45 55.43 0.75 -26.27 16 18 Si 1.07 25.68 29.91 -169.99 -5.08 20.59 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 C -0.19 -4.44 9.71 -26.72 -0.26 -4.70 16 23 C -0.20 -4.34 8.33 -26.73 -0.22 -4.56 16 24 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 25 H 0.06 0.93 6.36 -51.93 -0.33 0.60 16 26 H 0.07 1.46 5.96 -51.93 -0.31 1.15 16 27 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 1.37 7.60 -51.93 -0.39 0.97 16 29 H 0.10 1.45 8.03 -51.93 -0.42 1.03 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.00 -0.02 8.01 -51.93 -0.42 -0.43 16 37 H 0.07 1.85 6.18 -51.92 -0.32 1.53 16 38 H 0.27 7.89 5.68 -40.82 -0.23 7.65 16 39 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.26 8.03 -51.93 -0.42 0.84 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -28.96 335.59 -10.60 -39.56 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.45 Total: 4.01 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -2.80 Total: -31.36 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.33 Total: -37.87 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.96 -10.60 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.441 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds