Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00238 * 2 1 4 4 C 1.53002 * 109.46821 * 293.95659 * 3 2 1 5 5 H 1.09003 * 115.54946 * 29.41495 * 4 3 2 6 6 C 1.52995 * 117.49926 * 243.74322 * 4 3 2 7 7 C 1.52997 * 117.49763 * 175.08159 * 4 3 2 8 8 H 1.09001 * 117.50097 * 0.02562 * 7 4 3 9 9 C 1.53001 * 117.50158 * 214.99981 * 7 4 3 10 10 C 1.53002 * 117.49602 * 128.62013 * 9 7 4 11 11 C 1.52998 * 60.00154 * 252.51511 * 10 9 7 12 12 C 1.46901 * 111.00237 * 123.95474 * 2 1 3 13 13 C 1.52997 * 109.47111 * 71.44254 * 12 2 1 14 14 C 1.50695 * 115.55222 * 54.74023 * 13 12 2 15 15 H 1.08003 * 119.99878 * 249.90597 * 14 13 12 16 16 C 1.37876 * 120.00437 * 69.90627 * 14 13 12 17 17 N 1.31516 * 119.99698 * 355.36679 * 16 14 13 18 18 Si 1.86797 * 120.00213 * 175.36241 * 16 14 13 19 19 H 1.48497 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47359 * 239.99980 * 18 16 14 21 21 H 1.48507 * 109.46757 * 120.00039 * 18 16 14 22 22 C 1.53007 * 117.51564 * 200.43915 * 13 12 2 23 23 C 1.53005 * 60.00002 * 107.47786 * 22 13 12 24 24 H 1.09004 * 109.46958 * 301.00387 * 1 2 3 25 25 H 1.08993 * 109.47511 * 61.00676 * 1 2 3 26 26 H 1.08999 * 109.46805 * 181.00740 * 1 2 3 27 27 H 1.08996 * 109.46718 * 53.95048 * 3 2 1 28 28 H 1.08992 * 109.47718 * 173.95665 * 3 2 1 29 29 H 1.08996 * 117.49953 * 359.97438 * 6 4 3 30 30 H 1.09004 * 117.49905 * 145.01890 * 6 4 3 31 31 H 1.09001 * 115.55567 * 274.33783 * 9 7 4 32 32 H 1.08997 * 117.50310 * 0.02562 * 10 9 7 33 33 H 1.09007 * 117.49529 * 145.02595 * 10 9 7 34 34 H 1.08997 * 117.49996 * 252.50906 * 11 10 9 35 35 H 1.08995 * 117.49747 * 107.49278 * 11 10 9 36 36 H 1.08992 * 109.47130 * 311.43434 * 12 2 1 37 37 H 1.09011 * 109.47012 * 191.44275 * 12 2 1 38 38 H 0.96997 * 119.99933 * 5.17408 * 17 16 14 39 39 H 1.08993 * 117.49761 * 214.96534 * 22 13 12 40 40 H 1.09005 * 117.49640 * 359.97438 * 22 13 12 41 41 H 1.09002 * 117.49891 * 252.51410 * 23 22 13 42 42 H 1.08998 * 117.49694 * 107.48431 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 1 0.7098 1.7139 -1.7881 6 6 2.7804 2.4749 -2.2383 7 6 1.9918 3.5368 -1.4678 8 1 2.4886 4.0213 -0.6273 9 6 1.0311 4.4209 -2.2656 10 6 0.5542 5.7179 -1.6088 11 6 -0.4077 4.5375 -1.7583 12 6 1.9955 -0.7660 1.1376 13 6 1.7497 -2.2581 0.9052 14 6 2.2848 -2.8109 -0.3905 15 1 1.6026 -3.1130 -1.1714 16 6 3.6453 -2.9311 -0.5792 17 7 4.4781 -2.4797 0.3331 18 14 4.3057 -3.7353 -2.1306 19 1 3.1712 -4.1548 -2.9920 20 1 5.1165 -4.9243 -1.7651 21 1 5.1543 -2.7651 -2.8681 22 6 1.7723 -3.1771 2.1283 23 6 0.4448 -2.8509 1.4410 24 1 -0.3633 0.5294 0.8809 25 1 -0.3634 0.4981 -0.8988 26 1 -0.3633 -1.0275 0.0181 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3445 0.1082 29 1 3.7957 2.2612 -1.9042 30 1 2.6146 2.4063 -3.3134 31 1 1.1866 4.4302 -3.3444 32 1 0.9252 5.9415 -0.6086 33 1 0.3962 6.5810 -2.2556 34 1 -1.1986 4.6241 -2.5034 35 1 -0.6698 3.9845 -0.8564 36 1 1.4908 -0.4525 2.0514 37 1 3.0661 -0.5847 1.2333 38 1 4.1366 -2.1307 1.1712 39 1 2.1742 -4.1816 1.9956 40 1 1.9628 -2.7188 3.0988 41 1 -0.2382 -2.1779 1.9592 42 1 -0.0265 -3.6408 0.8561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698249862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = 59.998935 kcal Electronic energy + Delta-G solvation = -18628.316523 eV Core-core repulsion = 15996.041357 eV Total energy + Delta-G solvation = -2632.275166 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07361 -39.14014 -37.12134 -35.48827 -33.91378 -28.75729 -28.46035 -26.84971 -24.63087 -23.78255 -23.19939 -23.06044 -21.29944 -21.11752 -20.61544 -18.46214 -16.97845 -16.33830 -16.25433 -16.05173 -15.62178 -15.53951 -15.12707 -14.49660 -14.30535 -14.02991 -13.91289 -13.25335 -12.81911 -12.65596 -12.60380 -12.55035 -12.45778 -12.29324 -12.18590 -12.02115 -11.90393 -11.74702 -11.47728 -11.22481 -10.70774 -10.45889 -10.41735 -10.29514 -10.10090 -8.94195 -8.37037 -6.06273 1.56714 1.64987 1.80383 2.58986 2.66010 3.03998 3.10113 3.35645 3.47229 3.71151 3.82293 3.99864 4.14248 4.17582 4.20641 4.29789 4.39706 4.47095 4.48225 4.52703 4.53863 4.58156 4.61464 4.77129 4.81029 4.81499 4.82761 4.94512 4.97123 5.04349 5.05625 5.14679 5.26399 5.28670 5.30537 5.41695 5.45395 5.51272 6.22123 6.35479 6.42072 6.49201 6.88300 7.69353 9.01820 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.005917 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.789646 B = 4731.200985 C = 5485.475594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.093 3.907 4 C -0.137 4.137 5 H 0.105 0.895 6 C -0.172 4.172 7 C -0.107 4.107 8 H 0.103 0.897 9 C -0.132 4.132 10 C -0.168 4.168 11 C -0.178 4.178 12 C 0.110 3.890 13 C 0.008 3.992 14 C -0.539 4.539 15 H 0.032 0.968 16 C -0.017 4.017 17 N -0.940 5.940 18 Si 1.108 2.892 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.195 4.195 23 C -0.173 4.173 24 H 0.021 0.979 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.012 0.988 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 13.439 -2.769 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C -0.035 4.035 4 C -0.155 4.155 5 H 0.123 0.877 6 C -0.209 4.209 7 C -0.125 4.125 8 H 0.121 0.879 9 C -0.151 4.151 10 C -0.205 4.205 11 C -0.215 4.215 12 C -0.018 4.018 13 C 0.008 3.992 14 C -0.577 4.577 15 H 0.051 0.949 16 C -0.215 4.215 17 N -0.579 5.579 18 Si 0.933 3.067 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.213 1.213 22 C -0.233 4.233 23 C -0.210 4.210 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.608 12.844 -4.014 14.991 hybrid contribution -1.365 0.367 1.820 2.304 sum -7.973 13.210 -2.194 15.585 Atomic orbital electron populations 1.22355 0.87233 1.01655 1.00047 1.61568 1.07949 1.11965 1.43788 1.21607 0.98482 0.87999 0.95446 1.22238 1.00058 0.95915 0.97318 0.87700 1.23121 0.96195 1.03125 0.98467 1.21886 1.00629 0.89128 1.00888 0.87875 1.21744 0.95301 0.99276 0.98729 1.23049 1.03170 0.91936 1.02329 1.22987 0.92706 1.02450 1.03361 1.21480 0.97609 0.93722 0.89023 1.19175 0.96754 0.90068 0.93250 1.21293 0.93420 1.43216 0.99795 0.94941 1.26686 0.94111 0.95587 1.05138 1.70792 1.38036 1.40642 1.08403 0.83027 0.75211 0.75737 0.72723 1.20408 1.21087 1.21262 1.22841 1.02355 1.00900 0.97198 1.22813 0.90440 1.03521 1.04217 0.96018 0.90883 0.92098 0.94970 0.93185 0.89916 0.88187 0.87261 0.88786 0.87393 0.87852 0.89513 0.97006 0.93716 0.92705 0.91785 0.90364 0.89268 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 9.13 127.69 1.17 2.39 16 2 N -0.53 -21.86 4.41 -922.47 -4.07 -25.93 16 3 C 0.09 3.29 5.23 86.30 0.45 3.74 16 4 C -0.14 -4.13 5.34 -10.80 -0.06 -4.18 16 5 H 0.11 3.21 6.39 -2.39 -0.02 3.20 16 6 C -0.17 -4.92 9.90 30.62 0.30 -4.61 16 7 C -0.11 -2.62 5.59 -10.77 -0.06 -2.68 16 8 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 9 C -0.13 -2.67 5.87 -10.79 -0.06 -2.73 16 10 C -0.17 -2.80 10.25 30.59 0.31 -2.48 16 11 C -0.18 -3.27 10.18 30.59 0.31 -2.96 16 12 C 0.11 5.01 4.65 86.30 0.40 5.41 16 13 C 0.01 0.41 0.66 -52.93 -0.04 0.37 16 14 C -0.54 -30.09 8.50 25.60 0.22 -29.87 16 15 H 0.03 1.87 7.82 -2.91 -0.02 1.85 16 16 C -0.02 -0.95 5.44 84.65 0.46 -0.49 16 17 N -0.94 -56.54 13.45 21.45 0.29 -56.25 16 18 Si 1.11 52.03 29.91 68.60 2.05 54.08 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 C -0.19 -8.91 9.71 30.60 0.30 -8.62 16 23 C -0.17 -7.27 8.33 30.60 0.25 -7.02 16 24 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.07 2.28 6.36 -2.39 -0.02 2.27 16 26 H 0.06 2.28 5.96 -2.39 -0.01 2.27 16 27 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.05 1.96 7.60 -2.39 -0.02 1.94 16 29 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 30 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.01 0.50 8.01 -2.39 -0.02 0.48 16 37 H 0.04 2.28 6.18 -2.38 -0.01 2.27 16 38 H 0.26 15.74 5.68 -92.71 -0.53 15.21 16 39 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 41 H 0.09 3.29 8.03 -2.39 -0.02 3.27 16 42 H 0.08 3.22 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -61.74 335.59 3.44 -58.30 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.20 Total: 23.54 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 3.96 Total: -53.74 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.78 Total: -82.18 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -61.74 3.44 -58.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698249862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.299 kcal (2) G-P(sol) polarization free energy of solvation -61.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds