Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00014 * 2 1 4 4 C 1.53000 * 109.46956 * 282.62776 * 3 2 1 5 5 H 1.08996 * 110.67468 * 310.08412 * 4 3 2 6 6 C 1.54888 * 110.75580 * 186.84314 * 4 3 2 7 7 C 1.54267 * 104.19608 * 203.74346 * 6 4 3 8 8 H 1.08997 * 117.41165 * 163.58908 * 7 6 4 9 9 C 1.53005 * 118.20054 * 318.21992 * 7 6 4 10 10 C 1.53872 * 106.59891 * 23.61176 * 7 6 4 11 11 H 1.09003 * 121.32971 * 138.62313 * 10 7 6 12 12 C 1.54265 * 106.60016 * 0.02562 * 10 7 6 13 13 C 1.46896 * 110.99881 * 123.95457 * 2 1 3 14 14 C 1.52995 * 109.47431 * 76.25603 * 13 2 1 15 15 C 1.50702 * 115.54978 * 39.57728 * 14 13 2 16 16 H 1.08000 * 120.00149 * 269.59038 * 15 14 13 17 17 C 1.37879 * 119.99844 * 89.58428 * 15 14 13 18 18 N 1.31520 * 120.00177 * 3.42559 * 17 15 14 19 19 Si 1.86798 * 120.00033 * 183.42397 * 17 15 14 20 20 H 1.48506 * 109.47196 * 59.99848 * 19 17 15 21 21 H 1.48494 * 109.47330 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47030 * 300.00170 * 19 17 15 23 23 C 1.52995 * 117.49979 * 253.87082 * 14 13 2 24 24 C 1.52996 * 60.00225 * 252.50750 * 23 14 13 25 25 H 1.09002 * 109.47043 * 69.26640 * 1 2 3 26 26 H 1.08999 * 109.47477 * 189.27153 * 1 2 3 27 27 H 1.09005 * 109.47360 * 309.27292 * 1 2 3 28 28 H 1.09000 * 109.47032 * 42.62918 * 3 2 1 29 29 H 1.08995 * 109.47165 * 162.63031 * 3 2 1 30 30 H 1.08993 * 110.48906 * 322.42734 * 6 4 3 31 31 H 1.09000 * 110.48270 * 85.06738 * 6 4 3 32 32 H 1.08995 * 117.46023 * 201.21005 * 9 7 6 33 33 H 1.08998 * 117.45866 * 346.02009 * 9 7 6 34 34 H 1.08999 * 110.48325 * 217.71202 * 12 10 7 35 35 H 1.08993 * 110.48846 * 95.06649 * 12 10 7 36 36 H 1.09001 * 109.47140 * 196.25949 * 13 2 1 37 37 H 1.09002 * 109.47148 * 316.25181 * 13 2 1 38 38 H 0.96995 * 119.99780 * 185.01175 * 18 17 15 39 39 H 1.08999 * 117.50150 * 359.97438 * 23 14 13 40 40 H 1.09009 * 117.50005 * 145.02249 * 23 14 13 41 41 H 1.08998 * 117.50202 * 252.51307 * 24 23 14 42 42 H 1.08998 * 117.50082 * 107.48478 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8838 1.9606 -1.4076 5 1 2.2999 1.2751 -2.1458 6 6 2.5846 3.3398 -1.4826 7 6 1.8987 4.0487 -2.6687 8 1 2.0264 5.1281 -2.7500 9 6 1.6086 3.2319 -3.9295 10 6 0.5171 3.3918 -2.8340 11 1 -0.3715 3.9865 -3.0461 12 6 0.4113 2.3071 -1.7422 13 6 1.9954 -0.7660 1.1376 14 6 1.8582 -2.2627 0.8518 15 6 2.1540 -2.6838 -0.5646 16 1 1.3596 -2.7157 -1.2956 17 6 3.4388 -3.0282 -0.9274 18 7 4.3930 -3.0544 -0.0226 19 14 3.8244 -3.4577 -2.7040 20 1 3.5046 -2.2977 -3.5743 21 1 5.2660 -3.7901 -2.8313 22 1 3.0087 -4.6274 -3.1187 23 6 0.7679 -3.0285 1.6039 24 6 2.2388 -3.2335 1.9715 25 1 -0.3633 0.3638 -0.9611 26 1 -0.3634 -1.0142 0.1656 27 1 -0.3634 0.6505 0.7956 28 1 1.4198 1.9816 0.6960 29 1 3.0413 1.3592 0.3068 30 1 2.4262 3.8989 -0.5605 31 1 3.6501 3.2161 -1.6766 32 1 1.4633 3.7795 -4.8607 33 1 2.1006 2.2641 -4.0257 34 1 -0.1090 1.4294 -2.1257 35 1 -0.0982 2.6997 -0.8624 36 1 3.0466 -0.5193 1.2864 37 1 1.4325 -0.5146 2.0365 38 1 5.3097 -3.2253 -0.2894 39 1 0.1485 -2.4661 2.3025 40 1 0.2641 -3.8371 1.0741 41 1 2.7028 -4.1769 1.6836 42 1 2.5870 -2.8058 2.9116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704392317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = 56.275962 kcal Electronic energy + Delta-G solvation = -19051.742368 eV Core-core repulsion = 16419.305762 eV Total energy + Delta-G solvation = -2632.436606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59507 -37.34882 -35.17934 -31.72255 -31.34667 -28.35388 -26.64859 -26.32997 -25.06715 -22.70585 -20.97311 -20.84391 -19.55243 -19.15600 -18.74618 -15.98020 -15.71416 -15.54470 -14.47686 -14.28843 -13.83510 -13.76500 -13.42390 -12.95641 -12.80666 -12.52841 -11.97506 -11.76213 -11.47614 -11.45157 -11.25973 -10.88453 -10.77807 -10.60435 -10.54120 -10.37929 -10.26829 -10.12559 -9.97260 -9.88259 -9.36418 -9.25298 -8.82062 -8.17562 -7.89738 -7.28538 -5.82298 -3.83057 3.42911 3.46855 3.51011 3.75684 4.56182 4.60030 4.62976 4.86295 5.02759 5.22004 5.34871 5.41832 5.51749 5.58087 5.70104 5.73523 5.83342 5.91665 5.96118 5.99529 6.03969 6.09418 6.15979 6.20418 6.27883 6.30983 6.39088 6.40483 6.50616 6.57570 6.67480 6.73858 6.80773 6.83776 7.03363 7.23584 7.53612 7.67748 8.01318 8.08820 8.14093 8.67772 9.13527 9.78417 11.27072 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.007210 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.118274 B = 3882.459713 C = 4670.657711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.507 5.507 3 C 0.066 3.934 4 C -0.087 4.087 5 H 0.089 0.911 6 C -0.092 4.092 7 C -0.166 4.166 8 H 0.102 0.898 9 C -0.158 4.158 10 C -0.170 4.170 11 H 0.104 0.896 12 C -0.090 4.090 13 C 0.104 3.896 14 C 0.049 3.951 15 C -0.451 4.451 16 H 0.055 0.945 17 C 0.068 3.932 18 N -0.891 5.891 19 Si 0.884 3.116 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.221 4.221 24 C -0.149 4.149 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.005 0.995 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.001 0.999 38 H 0.255 0.745 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 11.990 -2.051 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.230 5.230 3 C -0.063 4.063 4 C -0.106 4.106 5 H 0.107 0.893 6 C -0.130 4.130 7 C -0.184 4.184 8 H 0.120 0.880 9 C -0.195 4.195 10 C -0.188 4.188 11 H 0.122 0.878 12 C -0.127 4.127 13 C -0.024 4.024 14 C 0.048 3.952 15 C -0.489 4.489 16 H 0.074 0.926 17 C -0.132 4.132 18 N -0.530 5.530 19 Si 0.713 3.287 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.258 4.258 24 C -0.187 4.187 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.167 11.656 -2.428 12.979 hybrid contribution 0.056 0.313 -0.189 0.370 sum -5.112 11.969 -2.617 13.275 Atomic orbital electron populations 1.22604 0.88850 1.01340 0.99592 1.61678 1.06316 1.10410 1.44560 1.22090 0.99747 0.89700 0.94717 1.22133 0.94890 0.95262 0.98323 0.89269 1.21956 0.99354 0.95569 0.96126 1.23115 0.99729 0.98163 0.97422 0.88032 1.23282 1.02070 1.01942 0.92180 1.23592 0.92581 1.02072 1.00537 0.87830 1.22184 0.97402 0.96992 0.96142 1.21708 0.97909 0.95049 0.87741 1.18862 0.95522 0.87610 0.93182 1.20125 0.93777 1.42207 0.92771 0.92642 1.24863 0.96674 0.95321 0.96377 1.69998 1.00236 1.50639 1.32116 0.86801 0.76803 0.78704 0.86436 1.20268 1.21759 1.20686 1.23108 0.92180 1.05178 1.05380 1.22445 0.94598 1.03171 0.98502 0.91605 0.91255 0.97654 0.96049 0.91410 0.91358 0.91567 0.88901 0.88507 0.90587 0.91572 0.91676 0.98086 0.93483 0.92404 0.90742 0.89529 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.81 60.06 0.53 0.96 16 2 N -0.51 -10.19 3.93 -242.92 -0.95 -11.14 16 3 C 0.07 1.12 4.69 -3.82 -0.02 1.11 16 4 C -0.09 -1.33 2.62 -88.61 -0.23 -1.56 16 5 H 0.09 1.59 7.42 -51.93 -0.39 1.20 16 6 C -0.09 -1.20 6.21 -25.07 -0.16 -1.36 16 7 C -0.17 -1.99 6.97 -89.50 -0.62 -2.61 16 8 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 9 C -0.16 -1.91 9.94 -25.42 -0.25 -2.16 16 10 C -0.17 -2.08 7.16 -88.19 -0.63 -2.71 16 11 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 12 C -0.09 -1.23 4.60 -25.05 -0.12 -1.35 16 13 C 0.10 2.30 5.08 -3.83 -0.02 2.28 16 14 C 0.05 1.20 1.24 -155.66 -0.19 1.01 16 15 C -0.45 -12.25 8.18 -34.44 -0.28 -12.53 16 16 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 17 C 0.07 1.89 5.42 -17.82 -0.10 1.79 16 18 N -0.89 -25.53 12.32 55.43 0.68 -24.85 16 19 Si 0.88 21.73 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 C -0.22 -4.91 9.28 -26.74 -0.25 -5.16 16 24 C -0.15 -3.59 8.99 -26.73 -0.24 -3.83 16 25 H 0.07 1.07 4.79 -51.93 -0.25 0.82 16 26 H 0.07 1.33 6.88 -51.93 -0.36 0.97 16 27 H 0.01 0.08 7.87 -51.93 -0.41 -0.32 16 28 H 0.02 0.34 7.59 -51.93 -0.39 -0.05 16 29 H 0.07 1.20 7.56 -51.93 -0.39 0.81 16 30 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.30 7.27 -51.93 -0.38 0.93 16 34 H 0.08 1.10 6.10 -51.93 -0.32 0.79 16 35 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 36 H 0.06 1.55 7.57 -51.93 -0.39 1.16 16 37 H 0.00 0.02 7.79 -51.93 -0.40 -0.38 16 38 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 39 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 40 H 0.07 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.09 2.26 7.95 -51.93 -0.41 1.85 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -28.01 324.09 -10.41 -38.42 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.42 Total: 2.10 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.58 Total: -26.12 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.27 Total: -35.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.01 -10.41 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704392317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.697 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds