Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00014 * 2 1 4 4 C 1.53000 * 109.46956 * 282.62776 * 3 2 1 5 5 H 1.08996 * 110.67468 * 310.08412 * 4 3 2 6 6 C 1.54888 * 110.75580 * 186.84314 * 4 3 2 7 7 C 1.54267 * 104.19608 * 203.74346 * 6 4 3 8 8 H 1.08997 * 117.41165 * 163.58908 * 7 6 4 9 9 C 1.53005 * 118.20054 * 318.21992 * 7 6 4 10 10 C 1.53872 * 106.59891 * 23.61176 * 7 6 4 11 11 H 1.09003 * 121.32971 * 138.62313 * 10 7 6 12 12 C 1.54265 * 106.60016 * 0.02562 * 10 7 6 13 13 C 1.46896 * 110.99881 * 123.95457 * 2 1 3 14 14 C 1.52995 * 109.47431 * 76.25603 * 13 2 1 15 15 C 1.50702 * 115.54978 * 39.57728 * 14 13 2 16 16 H 1.08000 * 120.00149 * 269.59038 * 15 14 13 17 17 C 1.37879 * 119.99844 * 89.58428 * 15 14 13 18 18 N 1.31520 * 120.00177 * 3.42559 * 17 15 14 19 19 Si 1.86798 * 120.00033 * 183.42397 * 17 15 14 20 20 H 1.48506 * 109.47196 * 59.99848 * 19 17 15 21 21 H 1.48494 * 109.47330 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47030 * 300.00170 * 19 17 15 23 23 C 1.52995 * 117.49979 * 253.87082 * 14 13 2 24 24 C 1.52996 * 60.00225 * 252.50750 * 23 14 13 25 25 H 1.09002 * 109.47043 * 69.26640 * 1 2 3 26 26 H 1.08999 * 109.47477 * 189.27153 * 1 2 3 27 27 H 1.09005 * 109.47360 * 309.27292 * 1 2 3 28 28 H 1.09000 * 109.47032 * 42.62918 * 3 2 1 29 29 H 1.08995 * 109.47165 * 162.63031 * 3 2 1 30 30 H 1.08993 * 110.48906 * 322.42734 * 6 4 3 31 31 H 1.09000 * 110.48270 * 85.06738 * 6 4 3 32 32 H 1.08995 * 117.46023 * 201.21005 * 9 7 6 33 33 H 1.08998 * 117.45866 * 346.02009 * 9 7 6 34 34 H 1.08999 * 110.48325 * 217.71202 * 12 10 7 35 35 H 1.08993 * 110.48846 * 95.06649 * 12 10 7 36 36 H 1.09001 * 109.47140 * 196.25949 * 13 2 1 37 37 H 1.09002 * 109.47148 * 316.25181 * 13 2 1 38 38 H 0.96995 * 119.99780 * 185.01175 * 18 17 15 39 39 H 1.08999 * 117.50150 * 359.97438 * 23 14 13 40 40 H 1.09009 * 117.50005 * 145.02249 * 23 14 13 41 41 H 1.08998 * 117.50202 * 252.51307 * 24 23 14 42 42 H 1.08998 * 117.50082 * 107.48478 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8838 1.9606 -1.4076 5 1 2.2999 1.2751 -2.1458 6 6 2.5846 3.3398 -1.4826 7 6 1.8987 4.0487 -2.6687 8 1 2.0264 5.1281 -2.7500 9 6 1.6086 3.2319 -3.9295 10 6 0.5171 3.3918 -2.8340 11 1 -0.3715 3.9865 -3.0461 12 6 0.4113 2.3071 -1.7422 13 6 1.9954 -0.7660 1.1376 14 6 1.8582 -2.2627 0.8518 15 6 2.1540 -2.6838 -0.5646 16 1 1.3596 -2.7157 -1.2956 17 6 3.4388 -3.0282 -0.9274 18 7 4.3930 -3.0544 -0.0226 19 14 3.8244 -3.4577 -2.7040 20 1 3.5046 -2.2977 -3.5743 21 1 5.2660 -3.7901 -2.8313 22 1 3.0087 -4.6274 -3.1187 23 6 0.7679 -3.0285 1.6039 24 6 2.2388 -3.2335 1.9715 25 1 -0.3633 0.3638 -0.9611 26 1 -0.3634 -1.0142 0.1656 27 1 -0.3634 0.6505 0.7956 28 1 1.4198 1.9816 0.6960 29 1 3.0413 1.3592 0.3068 30 1 2.4262 3.8989 -0.5605 31 1 3.6501 3.2161 -1.6766 32 1 1.4633 3.7795 -4.8607 33 1 2.1006 2.2641 -4.0257 34 1 -0.1090 1.4294 -2.1257 35 1 -0.0982 2.6997 -0.8624 36 1 3.0466 -0.5193 1.2864 37 1 1.4325 -0.5146 2.0365 38 1 5.3097 -3.2253 -0.2894 39 1 0.1485 -2.4661 2.3025 40 1 0.2641 -3.8371 1.0741 41 1 2.7028 -4.1769 1.6836 42 1 2.5870 -2.8058 2.9116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704392317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = 42.926217 kcal Electronic energy + Delta-G solvation = -19052.321257 eV Core-core repulsion = 16419.305762 eV Total energy + Delta-G solvation = -2633.015494 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69468 -39.02023 -36.79330 -33.81186 -32.60329 -29.49671 -28.11847 -27.83580 -27.01507 -23.95029 -22.82784 -22.23418 -20.85904 -20.51337 -20.11953 -17.85791 -16.91745 -16.83661 -16.48975 -15.94397 -15.51597 -15.16093 -14.64706 -14.45130 -14.14449 -13.90936 -13.49067 -13.25917 -12.99618 -12.81993 -12.76525 -12.72768 -12.54550 -12.34131 -11.97153 -11.88569 -11.82325 -11.59324 -11.36222 -11.08015 -10.84981 -10.80673 -10.36055 -10.21887 -9.81191 -8.80466 -7.95555 -6.00098 1.43783 1.45316 1.51857 2.52118 2.80614 3.19432 3.33791 3.59485 3.61134 3.78212 3.99213 4.15401 4.26252 4.39672 4.41664 4.50368 4.57617 4.62161 4.64382 4.69475 4.74009 4.77147 4.84053 4.89591 4.95235 4.98064 5.01405 5.03600 5.13481 5.16120 5.23243 5.29604 5.33995 5.39968 5.50454 5.56804 5.70615 5.75269 5.91413 6.41643 6.58003 6.66977 7.01249 7.63148 9.12824 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.007210 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.118274 B = 3882.459713 C = 4670.657711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.531 5.531 3 C 0.070 3.930 4 C -0.086 4.086 5 H 0.055 0.945 6 C -0.090 4.090 7 C -0.161 4.161 8 H 0.124 0.876 9 C -0.166 4.166 10 C -0.169 4.169 11 H 0.125 0.875 12 C -0.087 4.087 13 C 0.116 3.884 14 C 0.025 3.975 15 C -0.455 4.455 16 H 0.044 0.956 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.936 3.064 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.194 4.194 24 C -0.157 4.157 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.017 0.983 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 13.839 -2.353 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.254 5.254 3 C -0.058 4.058 4 C -0.105 4.105 5 H 0.074 0.926 6 C -0.128 4.128 7 C -0.179 4.179 8 H 0.142 0.858 9 C -0.203 4.203 10 C -0.187 4.187 11 H 0.142 0.858 12 C -0.123 4.123 13 C -0.012 4.012 14 C 0.024 3.976 15 C -0.493 4.493 16 H 0.062 0.938 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.763 3.237 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.231 4.231 24 C -0.195 4.195 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.609 13.505 -2.738 15.283 hybrid contribution 0.475 -0.288 -0.086 0.562 sum -6.134 13.218 -2.824 14.843 Atomic orbital electron populations 1.22579 0.87332 1.00852 1.01102 1.61605 1.07864 1.12070 1.43882 1.22092 0.98941 0.88544 0.96255 1.22013 0.96593 0.95768 0.96170 0.92638 1.21939 0.98928 0.94373 0.97539 1.23170 0.99108 0.99083 0.96533 0.85840 1.23341 1.02201 1.01369 0.93341 1.23635 0.93452 1.01650 0.99945 0.85756 1.22116 0.95823 0.97196 0.97214 1.21430 0.96768 0.93800 0.89186 1.19005 0.97342 0.89143 0.92089 1.20322 0.93421 1.41518 0.94039 0.93788 1.25449 0.96787 0.95742 0.99428 1.70103 1.00235 1.51968 1.33423 0.85968 0.76517 0.78415 0.82753 1.20221 1.21667 1.20215 1.23064 0.91256 1.04282 1.04492 1.22327 0.96260 1.01996 0.98951 0.90282 0.92892 0.95674 0.94130 0.92981 0.89961 0.92149 0.86840 0.90723 0.91787 0.90410 0.94269 0.96534 0.93828 0.89601 0.91019 0.92338 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 8.81 127.69 1.13 2.11 16 2 N -0.53 -21.08 3.93 -922.47 -3.62 -24.71 16 3 C 0.07 2.32 4.69 86.30 0.41 2.73 16 4 C -0.09 -2.58 2.62 -9.49 -0.02 -2.61 16 5 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 6 C -0.09 -2.20 6.21 31.67 0.20 -2.00 16 7 C -0.16 -3.43 6.97 -10.07 -0.07 -3.50 16 8 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 9 C -0.17 -3.72 9.94 31.45 0.31 -3.41 16 10 C -0.17 -3.68 7.16 -9.22 -0.07 -3.74 16 11 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 12 C -0.09 -2.20 4.60 31.68 0.15 -2.05 16 13 C 0.12 5.13 5.08 86.30 0.44 5.57 16 14 C 0.03 1.23 1.24 -52.93 -0.07 1.16 16 15 C -0.45 -25.02 8.18 25.60 0.21 -24.81 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 17 C 0.02 1.33 5.42 84.65 0.46 1.79 16 18 N -0.92 -53.70 12.32 21.45 0.26 -53.44 16 19 Si 0.94 45.32 29.54 68.60 2.03 47.34 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 C -0.19 -8.37 9.28 30.59 0.28 -8.09 16 24 C -0.16 -7.59 8.99 30.59 0.27 -7.32 16 25 H 0.08 2.45 4.79 -2.39 -0.01 2.44 16 26 H 0.05 1.95 6.88 -2.39 -0.02 1.94 16 27 H 0.02 0.74 7.87 -2.38 -0.02 0.73 16 28 H 0.04 1.20 7.59 -2.39 -0.02 1.18 16 29 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 30 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.01 7.27 -2.39 -0.02 1.99 16 34 H 0.06 1.77 6.10 -2.39 -0.01 1.76 16 35 H 0.08 1.80 7.90 -2.39 -0.02 1.78 16 36 H 0.04 1.90 7.57 -2.39 -0.02 1.88 16 37 H 0.02 0.67 7.79 -2.39 -0.02 0.65 16 38 H 0.25 14.38 8.32 -92.71 -0.77 13.61 16 39 H 0.09 3.23 8.08 -2.39 -0.02 3.21 16 40 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.06 3.13 7.95 -2.39 -0.02 3.11 16 42 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -60.00 324.09 3.26 -56.74 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.96 Total: 18.23 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 3.62 Total: -44.17 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.36 Total: -78.14 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -60.00 3.26 -56.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704392317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.665 kcal (2) G-P(sol) polarization free energy of solvation -59.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds