Wall clock time and date at job start Mon Mar 30 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52996 * 109.47343 * 240.00063 * 2 1 3 5 5 C 1.50703 * 109.46946 * 59.99764 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99899 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47418 * 89.99714 * 9 7 5 11 11 H 1.48498 * 109.47091 * 209.99774 * 9 7 5 12 12 H 1.48498 * 109.46997 * 329.99585 * 9 7 5 13 13 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 14 14 N 1.46906 * 109.47053 * 300.00316 * 13 2 1 15 15 C 1.46895 * 110.99789 * 179.97438 * 14 13 2 16 16 C 1.52998 * 117.49768 * 223.61483 * 15 14 13 17 17 C 1.52995 * 138.58585 * 121.61377 * 16 15 14 18 18 C 1.52991 * 138.58387 * 23.41361 * 16 15 14 19 19 C 1.52987 * 60.00324 * 252.51552 * 16 15 14 20 20 C 1.52992 * 138.59484 * 130.89284 * 19 16 15 21 21 C 1.52991 * 138.59023 * 229.11603 * 19 16 15 22 22 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 23 23 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 24 24 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 27 27 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 28 28 H 1.09001 * 109.47372 * 179.97438 * 4 2 1 29 29 H 1.08996 * 109.47261 * 300.00175 * 4 2 1 30 30 H 0.97007 * 119.99539 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47056 * 179.97438 * 13 2 1 32 32 H 1.09004 * 109.47006 * 60.00102 * 13 2 1 33 33 H 1.00902 * 111.00068 * 56.04103 * 14 13 2 34 34 H 1.08998 * 115.55518 * 9.33037 * 15 14 13 35 35 H 1.09001 * 117.49855 * 336.60609 * 17 16 15 36 36 H 1.09005 * 117.49999 * 121.62095 * 17 16 15 37 37 H 1.08999 * 117.50027 * 238.37326 * 18 16 15 38 38 H 1.08999 * 117.50018 * 23.37489 * 18 16 15 39 39 H 1.09004 * 117.50008 * 238.39130 * 20 19 16 40 40 H 1.08997 * 117.49940 * 23.40049 * 20 19 16 41 41 H 1.09001 * 117.50295 * 336.58423 * 21 19 16 42 42 H 1.09003 * 117.50109 * 121.58683 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6265 -1.5514 -3.8526 9 14 1.2483 0.3988 -5.2572 10 1 2.2271 1.4399 -5.6614 11 1 1.0825 -0.5802 -6.3613 12 1 -0.0595 1.0372 -4.9612 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0210 -0.6952 3.6703 16 6 1.0111 -0.8888 4.8032 17 6 0.4034 -2.0342 5.6153 18 6 -0.5053 -0.9765 4.9859 19 6 2.1252 0.1505 4.9410 20 6 2.2802 1.6219 5.3305 21 6 3.1890 0.5642 5.9598 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 -0.7208 -1.2494 29 1 1.6768 -1.7488 -1.2493 30 1 2.8609 -1.8827 -4.7337 31 1 3.1300 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2492 33 1 0.5439 0.0413 2.4402 34 1 2.7676 -1.4755 3.5224 35 1 0.4067 -3.0271 5.1656 36 1 0.5324 -2.0077 6.6974 37 1 -0.9744 -0.2541 5.6539 38 1 -1.1000 -1.2732 4.1220 39 1 2.7235 2.2933 4.5950 40 1 1.5062 2.0599 5.9606 41 1 3.0129 0.3063 7.0042 42 1 4.2303 0.5392 5.6386 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715285385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:17 Heat of formation + Delta-G solvation = 75.670962 kcal Electronic energy + Delta-G solvation = -18276.892714 eV Core-core repulsion = 15645.297139 eV Total energy + Delta-G solvation = -2631.595575 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.06292 -37.19312 -35.10170 -33.61952 -32.05416 -28.94566 -26.84493 -26.32106 -24.90391 -22.75893 -22.24836 -22.15963 -19.98765 -18.34759 -17.79720 -16.23832 -15.63600 -15.39225 -14.93243 -14.85059 -14.34638 -14.18465 -13.46013 -12.98605 -12.68146 -12.25841 -11.98864 -11.82276 -11.66477 -11.52573 -11.14662 -11.05602 -10.91379 -10.81831 -10.72496 -10.50902 -10.36767 -10.16996 -10.05993 -9.68406 -9.66082 -9.53473 -8.99578 -8.80544 -8.30629 -7.93785 -5.95228 -3.95264 3.25864 3.34282 3.40798 3.43557 3.59397 4.07428 4.16191 4.22825 4.49789 4.72108 4.99493 5.17491 5.35561 5.40661 5.43316 5.48442 5.57209 5.58306 5.67220 5.68940 5.76504 5.79251 5.81395 5.94886 5.99467 6.00411 6.14733 6.26328 6.34091 6.51403 6.67088 6.80388 6.84179 7.21654 7.25226 7.26964 7.41239 7.66795 7.71989 7.86624 8.05059 8.49461 9.10034 9.67492 11.16474 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036629 B = 0.004291 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.228831 B = 6523.241387 C = 6723.621445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.069 3.931 14 N -0.652 5.652 15 C 0.134 3.866 16 C -0.203 4.203 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.166 4.166 20 C -0.123 4.123 21 C -0.136 4.136 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.344 0.656 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 1.918 18.483 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.282 5.282 15 C 0.022 3.978 16 C -0.205 4.205 17 C -0.171 4.171 18 C -0.167 4.167 19 C -0.168 4.168 20 C -0.160 4.160 21 C -0.173 4.173 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.166 0.834 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.259 2.273 18.296 18.574 hybrid contribution -0.827 -0.429 -0.856 1.265 sum -3.085 1.844 17.440 17.806 Atomic orbital electron populations 1.21776 0.96088 1.00387 1.00426 1.20634 0.94726 0.96159 0.94324 1.21603 0.99812 0.95783 1.00178 1.19124 0.96139 0.94983 0.90129 1.21238 1.30807 1.11854 0.90604 0.92294 1.25013 0.95422 0.95096 0.99042 1.69970 1.37325 1.23198 1.23271 0.86664 0.79237 0.79428 0.83096 1.20773 1.21399 1.19943 1.22211 0.99852 0.94830 0.89006 1.60220 1.16545 1.51534 0.99876 1.21985 0.96389 0.94959 0.84429 1.22003 0.92841 1.00783 1.04912 1.22652 1.02177 0.93689 0.98554 1.22593 0.90242 1.01303 1.02566 1.21513 0.99250 0.95744 1.00274 1.22552 1.01335 0.90090 1.02038 1.22679 0.95489 1.02452 0.96640 0.94874 0.91638 0.94070 0.94133 0.92659 0.93918 0.96645 0.96885 0.93177 0.91376 0.95601 0.83428 0.87393 0.88618 0.88962 0.88849 0.88520 0.88096 0.89321 0.89121 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.26 16 3 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.89 7.65 -34.44 -0.26 -14.16 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.07 1.21 4.50 -3.82 -0.02 1.20 16 14 N -0.65 -9.92 5.99 -106.73 -0.64 -10.56 16 15 C 0.13 1.84 6.31 -67.72 -0.43 1.41 16 16 C -0.20 -2.49 5.35 -154.52 -0.83 -3.31 16 17 C -0.13 -1.36 10.53 -26.74 -0.28 -1.64 16 18 C -0.13 -1.38 10.53 -26.74 -0.28 -1.66 16 19 C -0.17 -2.09 5.60 -154.52 -0.87 -2.96 16 20 C -0.12 -1.39 10.53 -26.74 -0.28 -1.67 16 21 C -0.14 -1.42 10.53 -26.74 -0.28 -1.70 16 22 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 23 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 27 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.34 5.15 6.60 -39.29 -0.26 4.89 16 34 H 0.11 1.48 7.90 -51.93 -0.41 1.07 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -29.06 337.61 -10.52 -39.58 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.44 Total: 3.11 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.24 Total: -27.66 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.10 Total: -36.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.06 -10.52 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715285385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.249 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds