Wall clock time and date at job start Mon Mar 30 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 115.56504 * 2 1 4 4 C 1.53079 * 117.51280 * 214.29519 * 2 1 3 5 5 C 1.53001 * 59.98458 * 252.52117 * 4 2 1 6 6 H 1.08994 * 117.50237 * 252.49860 * 5 4 2 7 7 C 1.53007 * 117.49507 * 107.49663 * 5 4 2 8 8 H 1.08990 * 115.54683 * 16.83967 * 7 5 4 9 9 C 1.53004 * 117.49450 * 162.50499 * 7 5 4 10 10 C 1.53004 * 117.51684 * 231.13506 * 7 5 4 11 11 H 1.09002 * 117.49845 * 0.02562 * 10 7 5 12 12 C 1.52994 * 117.49651 * 145.03366 * 10 7 5 13 13 N 1.46894 * 109.47080 * 185.00020 * 12 10 7 14 14 C 1.46902 * 111.00351 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47649 * 174.70858 * 14 13 12 16 16 C 1.50707 * 115.54893 * 39.57468 * 15 14 13 17 17 H 1.08003 * 119.99985 * 265.27509 * 16 15 14 18 18 C 1.37875 * 119.99844 * 85.27231 * 16 15 14 19 19 N 1.31511 * 120.00367 * 353.36805 * 18 16 15 20 20 Si 1.86797 * 119.99605 * 173.36930 * 18 16 15 21 21 H 1.48501 * 109.47539 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47249 * 119.99942 * 20 18 16 23 23 H 1.48502 * 109.47312 * 240.00019 * 20 18 16 24 24 C 1.52996 * 117.50013 * 253.86916 * 15 14 13 25 25 C 1.52998 * 117.50346 * 185.24126 * 15 14 13 26 26 H 1.08997 * 109.47356 * 274.31720 * 1 2 3 27 27 H 1.09005 * 109.46899 * 34.30986 * 1 2 3 28 28 H 1.08991 * 109.47706 * 154.30943 * 1 2 3 29 29 H 1.09004 * 117.49283 * 145.03656 * 4 2 1 30 30 H 1.08994 * 117.50778 * 359.97438 * 4 2 1 31 31 H 1.08995 * 117.50020 * 215.00120 * 9 7 5 32 32 H 1.08996 * 117.49885 * 0.02562 * 9 7 5 33 33 H 1.09006 * 109.47272 * 304.99972 * 12 10 7 34 34 H 1.09001 * 109.47327 * 64.99661 * 12 10 7 35 35 H 1.00900 * 111.00515 * 56.04256 * 13 12 10 36 36 H 1.09005 * 109.47273 * 294.71169 * 14 13 12 37 37 H 1.09000 * 109.47090 * 54.70661 * 14 13 12 38 38 H 0.97001 * 120.00362 * 185.04734 * 19 18 16 39 39 H 1.08997 * 117.49950 * 359.97438 * 24 15 14 40 40 H 1.09002 * 117.49893 * 145.02123 * 24 15 14 41 41 H 1.09000 * 117.50278 * 214.97921 * 25 15 14 42 42 H 1.09007 * 117.49521 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1712 -0.8751 1.2686 7 6 1.3587 -2.1562 1.4715 8 1 1.0258 -2.9902 0.8538 9 6 1.6506 -2.4414 2.9461 10 6 0.4009 -1.6511 2.5525 11 1 0.3957 -0.5811 2.7603 12 6 -0.9508 -2.3556 2.6838 13 7 -1.7707 -1.6594 3.6842 14 6 -3.0794 -2.3091 3.8369 15 6 -3.8513 -1.6398 4.9757 16 6 -3.7202 -0.1406 5.0568 17 1 -2.9788 0.3024 5.7053 18 6 -4.5468 0.6653 4.3029 19 7 -5.3587 0.1298 3.4178 20 14 -4.5131 2.5181 4.5389 21 1 -3.5202 2.8657 5.5869 22 1 -4.1335 3.1730 3.2614 23 1 -5.8586 2.9885 4.9556 24 6 -3.9787 -2.4103 6.2914 25 6 -5.1944 -2.2540 5.3755 26 1 -0.3634 0.0774 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9260 -0.4455 29 1 3.1723 -0.8757 -1.2680 30 1 1.6122 -1.8597 -1.2678 31 1 1.5096 -3.4631 3.2985 32 1 2.4676 -1.8914 3.4129 33 1 -1.4626 -2.3421 1.7214 34 1 -0.7938 -3.3877 2.9972 35 1 -1.8769 -0.6839 3.4493 36 1 -3.6436 -2.2122 2.9094 37 1 -2.9362 -3.3650 4.0664 38 1 -5.8865 0.6995 2.8366 39 1 -3.5129 -3.3943 6.3455 40 1 -3.9676 -1.8330 7.2159 41 1 -5.9830 -1.5739 5.6976 42 1 -5.5278 -3.1353 4.8274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716578848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:59 Heat of formation + Delta-G solvation = 61.320517 kcal Electronic energy + Delta-G solvation = -18362.206123 eV Core-core repulsion = 15729.988266 eV Total energy + Delta-G solvation = -2632.217857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.06006 -36.94770 -35.82334 -33.34377 -31.88375 -28.62999 -26.88858 -25.27852 -23.51577 -22.79008 -21.34346 -20.96539 -20.43289 -19.15180 -18.85671 -15.90075 -15.75401 -15.12010 -14.77089 -14.58193 -14.12953 -13.67378 -13.40011 -13.19604 -12.72494 -12.49541 -12.23555 -11.88760 -11.54882 -11.45573 -11.29467 -11.21961 -10.96993 -10.84189 -10.74263 -10.43005 -10.38223 -10.35452 -10.07843 -9.50003 -9.39281 -9.19031 -8.75115 -8.40351 -8.00999 -7.29441 -5.99172 -4.03300 3.28847 3.38349 3.43042 3.62133 4.06717 4.42765 4.51933 4.81034 4.91268 4.99697 5.16350 5.28661 5.31922 5.37470 5.43513 5.50934 5.71791 5.75957 5.77453 5.87886 5.98782 5.99362 6.02599 6.14450 6.16211 6.21459 6.26656 6.32126 6.43965 6.47175 6.62275 6.63979 6.82335 6.86714 7.01288 7.18497 7.49341 7.56873 7.92744 8.15487 8.47047 8.58735 9.00209 9.60759 11.09003 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.005839 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.964883 B = 4793.943953 C = 5677.907360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.147 4.147 3 H 0.099 0.901 4 C -0.177 4.177 5 C -0.118 4.118 6 H 0.101 0.899 7 C -0.127 4.127 8 H 0.100 0.900 9 C -0.168 4.168 10 C -0.124 4.124 11 H 0.107 0.893 12 C 0.087 3.913 13 N -0.672 5.672 14 C 0.108 3.892 15 C 0.051 3.949 16 C -0.480 4.480 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.885 3.115 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.207 4.207 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.021 0.979 34 H 0.060 0.940 35 H 0.353 0.647 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.258 0.742 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.034 -3.203 -6.348 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 H 0.117 0.883 4 C -0.214 4.214 5 C -0.136 4.136 6 H 0.119 0.881 7 C -0.145 4.145 8 H 0.118 0.882 9 C -0.205 4.205 10 C -0.143 4.143 11 H 0.125 0.875 12 C -0.043 4.043 13 N -0.304 5.304 14 C -0.022 4.022 15 C 0.050 3.950 16 C -0.518 4.518 17 H 0.080 0.920 18 C -0.135 4.135 19 N -0.520 5.520 20 Si 0.713 3.287 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.245 4.245 25 C -0.202 4.202 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.173 0.827 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.112 -3.484 -5.910 13.920 hybrid contribution -0.502 1.238 -0.826 1.571 sum 11.610 -2.246 -6.736 13.610 Atomic orbital electron populations 1.21400 0.92303 1.01490 1.02890 1.22374 0.95905 0.93927 1.04320 0.88276 1.23119 1.02282 1.02071 0.93954 1.21806 0.99748 0.99070 0.93023 0.88065 1.21776 1.01998 0.99810 0.90948 0.88199 1.23077 1.00039 1.01217 0.96209 1.22383 0.90912 0.99770 1.01219 0.87469 1.21484 0.91591 0.97376 0.93820 1.60390 1.16134 1.07320 1.46588 1.21346 0.87986 0.94614 0.98206 1.18791 0.93331 0.93457 0.89401 1.20448 1.17288 0.88535 1.25569 0.91980 1.24999 0.94872 0.98127 0.95480 1.70008 1.26650 1.34637 1.20715 0.86648 0.77867 0.86147 0.78051 1.19633 1.21191 1.21141 1.22986 1.04723 1.00139 0.96626 1.22523 0.92836 1.01113 1.03702 0.91101 0.92698 0.92673 0.89248 0.88917 0.89024 0.89238 0.96087 0.92176 0.82696 0.95501 0.94612 0.93259 0.91930 0.90777 0.90290 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.98 37.15 0.33 -1.24 16 2 C -0.15 -1.68 6.40 -90.58 -0.58 -2.26 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.18 -1.81 9.90 -26.69 -0.26 -2.08 16 5 C -0.12 -1.33 5.87 -90.61 -0.53 -1.86 16 6 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.13 -1.56 4.97 -90.61 -0.45 -2.01 16 8 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 9 C -0.17 -2.13 9.90 -26.72 -0.26 -2.39 16 10 C -0.12 -1.80 3.97 -90.62 -0.36 -2.16 16 11 H 0.11 1.67 7.30 -51.93 -0.38 1.29 16 12 C 0.09 1.46 5.96 -3.83 -0.02 1.44 16 13 N -0.67 -13.78 6.26 -113.78 -0.71 -14.49 16 14 C 0.11 2.43 5.80 -3.83 -0.02 2.41 16 15 C 0.05 1.26 1.76 -155.66 -0.27 0.98 16 16 C -0.48 -12.78 7.47 -34.44 -0.26 -13.04 16 17 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 18 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 19 N -0.88 -24.59 12.93 55.43 0.72 -23.87 16 20 Si 0.88 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.21 -4.69 9.88 -26.73 -0.26 -4.95 16 25 C -0.16 -3.92 9.46 -26.73 -0.25 -4.17 16 26 H 0.07 1.01 5.97 -51.93 -0.31 0.70 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 35 H 0.35 7.75 7.70 -39.29 -0.30 7.45 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.76 7.93 -51.93 -0.41 0.35 16 38 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 39 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 41 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -26.93 340.29 -10.87 -37.80 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.67 Total: 9.24 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -3.31 Total: -29.62 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.00 Total: -38.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.93 -10.87 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716578848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.120 kcal (2) G-P(sol) polarization free energy of solvation -26.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds