Wall clock time and date at job start Mon Mar 30 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 115.56504 * 2 1 4 4 C 1.53079 * 117.51280 * 214.29519 * 2 1 3 5 5 C 1.53001 * 59.98458 * 252.52117 * 4 2 1 6 6 H 1.08994 * 117.50237 * 252.49860 * 5 4 2 7 7 C 1.53007 * 117.49507 * 107.49663 * 5 4 2 8 8 H 1.08990 * 115.54683 * 16.83967 * 7 5 4 9 9 C 1.53004 * 117.49450 * 162.50499 * 7 5 4 10 10 C 1.53004 * 117.51684 * 231.13506 * 7 5 4 11 11 H 1.09002 * 117.49845 * 0.02562 * 10 7 5 12 12 C 1.52994 * 117.49651 * 145.03366 * 10 7 5 13 13 N 1.46894 * 109.47080 * 185.00020 * 12 10 7 14 14 C 1.46902 * 111.00351 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47649 * 174.70858 * 14 13 12 16 16 C 1.50707 * 115.54893 * 39.57468 * 15 14 13 17 17 H 1.08003 * 119.99985 * 265.27509 * 16 15 14 18 18 C 1.37875 * 119.99844 * 85.27231 * 16 15 14 19 19 N 1.31511 * 120.00367 * 353.36805 * 18 16 15 20 20 Si 1.86797 * 119.99605 * 173.36930 * 18 16 15 21 21 H 1.48501 * 109.47539 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47249 * 119.99942 * 20 18 16 23 23 H 1.48502 * 109.47312 * 240.00019 * 20 18 16 24 24 C 1.52996 * 117.50013 * 253.86916 * 15 14 13 25 25 C 1.52998 * 117.50346 * 185.24126 * 15 14 13 26 26 H 1.08997 * 109.47356 * 274.31720 * 1 2 3 27 27 H 1.09005 * 109.46899 * 34.30986 * 1 2 3 28 28 H 1.08991 * 109.47706 * 154.30943 * 1 2 3 29 29 H 1.09004 * 117.49283 * 145.03656 * 4 2 1 30 30 H 1.08994 * 117.50778 * 359.97438 * 4 2 1 31 31 H 1.08995 * 117.50020 * 215.00120 * 9 7 5 32 32 H 1.08996 * 117.49885 * 0.02562 * 9 7 5 33 33 H 1.09006 * 109.47272 * 304.99972 * 12 10 7 34 34 H 1.09001 * 109.47327 * 64.99661 * 12 10 7 35 35 H 1.00900 * 111.00515 * 56.04256 * 13 12 10 36 36 H 1.09005 * 109.47273 * 294.71169 * 14 13 12 37 37 H 1.09000 * 109.47090 * 54.70661 * 14 13 12 38 38 H 0.97001 * 120.00362 * 185.04734 * 19 18 16 39 39 H 1.08997 * 117.49950 * 359.97438 * 24 15 14 40 40 H 1.09002 * 117.49893 * 145.02123 * 24 15 14 41 41 H 1.09000 * 117.50278 * 214.97921 * 25 15 14 42 42 H 1.09007 * 117.49521 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1712 -0.8751 1.2686 7 6 1.3587 -2.1562 1.4715 8 1 1.0258 -2.9902 0.8538 9 6 1.6506 -2.4414 2.9461 10 6 0.4009 -1.6511 2.5525 11 1 0.3957 -0.5811 2.7603 12 6 -0.9508 -2.3556 2.6838 13 7 -1.7707 -1.6594 3.6842 14 6 -3.0794 -2.3091 3.8369 15 6 -3.8513 -1.6398 4.9757 16 6 -3.7202 -0.1406 5.0568 17 1 -2.9788 0.3024 5.7053 18 6 -4.5468 0.6653 4.3029 19 7 -5.3587 0.1298 3.4178 20 14 -4.5131 2.5181 4.5389 21 1 -3.5202 2.8657 5.5869 22 1 -4.1335 3.1730 3.2614 23 1 -5.8586 2.9885 4.9556 24 6 -3.9787 -2.4103 6.2914 25 6 -5.1944 -2.2540 5.3755 26 1 -0.3634 0.0774 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9260 -0.4455 29 1 3.1723 -0.8757 -1.2680 30 1 1.6122 -1.8597 -1.2678 31 1 1.5096 -3.4631 3.2985 32 1 2.4676 -1.8914 3.4129 33 1 -1.4626 -2.3421 1.7214 34 1 -0.7938 -3.3877 2.9972 35 1 -1.8769 -0.6839 3.4493 36 1 -3.6436 -2.2122 2.9094 37 1 -2.9362 -3.3650 4.0664 38 1 -5.8865 0.6995 2.8366 39 1 -3.5129 -3.3943 6.3455 40 1 -3.9676 -1.8330 7.2159 41 1 -5.9830 -1.5739 5.6976 42 1 -5.5278 -3.1353 4.8274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716578848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:59 Heat of formation + Delta-G solvation = 48.940243 kcal Electronic energy + Delta-G solvation = -18362.742972 eV Core-core repulsion = 15729.988266 eV Total energy + Delta-G solvation = -2632.754706 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07016 -38.70859 -37.00970 -34.84449 -33.94318 -29.67772 -28.42169 -27.26812 -24.68394 -24.14469 -22.84574 -22.21820 -21.71966 -20.81221 -20.02566 -17.85478 -16.65488 -16.58557 -16.51698 -16.04061 -15.78109 -15.14407 -14.82965 -14.47458 -14.19365 -13.82075 -13.41166 -13.31981 -13.08147 -13.00994 -12.88699 -12.75160 -12.33292 -12.28521 -12.19629 -12.01070 -11.94583 -11.53111 -11.31188 -11.21377 -10.74583 -10.49164 -10.38915 -10.23606 -9.87800 -8.98029 -8.05578 -6.14449 1.40026 1.44718 1.54697 2.45153 2.66346 3.09057 3.22094 3.37569 3.59691 3.82550 3.87987 4.02739 4.08018 4.25543 4.37036 4.42725 4.46037 4.54814 4.59348 4.64232 4.72495 4.78015 4.86594 4.92969 4.95682 4.97148 4.99474 5.01058 5.04191 5.14668 5.22514 5.28382 5.31367 5.34370 5.43182 5.48705 5.64100 5.66480 5.82438 6.41470 6.59494 6.74418 6.93246 7.52032 9.02232 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.005839 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.964883 B = 4793.943953 C = 5677.907360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.157 4.157 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.125 4.125 6 H 0.112 0.888 7 C -0.111 4.111 8 H 0.103 0.897 9 C -0.159 4.159 10 C -0.141 4.141 11 H 0.093 0.907 12 C 0.093 3.907 13 N -0.674 5.674 14 C 0.120 3.880 15 C 0.023 3.977 16 C -0.486 4.486 17 H 0.051 0.949 18 C 0.027 3.973 19 N -0.910 5.910 20 Si 0.942 3.058 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.287 1.287 24 C -0.186 4.186 25 C -0.168 4.168 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.341 0.659 36 H -0.001 1.001 37 H 0.050 0.950 38 H 0.257 0.743 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.851 -3.529 -6.576 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.175 4.175 3 H 0.126 0.874 4 C -0.200 4.200 5 C -0.143 4.143 6 H 0.130 0.870 7 C -0.130 4.130 8 H 0.121 0.879 9 C -0.196 4.196 10 C -0.160 4.160 11 H 0.111 0.889 12 C -0.036 4.036 13 N -0.305 5.305 14 C -0.010 4.010 15 C 0.022 3.978 16 C -0.524 4.524 17 H 0.069 0.931 18 C -0.172 4.172 19 N -0.549 5.549 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.213 1.213 24 C -0.223 4.223 25 C -0.206 4.206 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.017 0.983 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.945 -3.821 -6.131 15.705 hybrid contribution -1.064 1.311 -0.744 1.845 sum 12.881 -2.510 -6.875 14.815 Atomic orbital electron populations 1.21352 0.93733 1.01374 1.01510 1.22376 0.94836 0.94816 1.05516 0.87413 1.23190 1.02709 1.00872 0.93184 1.21866 0.99849 0.98655 0.93892 0.86964 1.21797 1.00561 0.99708 0.90886 0.87906 1.23162 0.98777 1.01193 0.96464 1.22163 0.90481 0.98988 1.04344 0.88884 1.21490 0.92129 0.97604 0.92423 1.60397 1.15242 1.06743 1.48112 1.21155 0.88401 0.95304 0.96138 1.18993 0.94279 0.93103 0.91409 1.20571 1.16849 0.89916 1.25078 0.93124 1.25581 0.94669 1.01740 0.95255 1.70106 1.27436 1.35843 1.21480 0.85746 0.77574 0.81757 0.78028 1.19282 1.20725 1.21297 1.22986 1.03040 1.00806 0.95502 1.22430 0.92401 1.01091 1.04673 0.93183 0.92446 0.93114 0.87318 0.88904 0.88409 0.88190 0.96882 0.91405 0.84037 0.98273 0.93114 0.93381 0.89490 0.90857 0.92537 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.98 71.98 0.65 -2.46 16 2 C -0.16 -3.34 6.40 -10.77 -0.07 -3.41 16 3 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.16 -2.91 9.90 30.62 0.30 -2.61 16 5 C -0.12 -2.53 5.87 -10.79 -0.06 -2.59 16 6 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 7 C -0.11 -2.53 4.97 -10.79 -0.05 -2.58 16 8 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 9 C -0.16 -3.69 9.90 30.60 0.30 -3.39 16 10 C -0.14 -3.98 3.97 -10.79 -0.04 -4.03 16 11 H 0.09 2.91 7.30 -2.39 -0.02 2.90 16 12 C 0.09 3.09 5.96 86.30 0.51 3.60 16 13 N -0.67 -27.77 6.26 -513.90 -3.22 -30.99 16 14 C 0.12 5.41 5.80 86.30 0.50 5.91 16 15 C 0.02 1.12 1.76 -52.93 -0.09 1.03 16 16 C -0.49 -26.10 7.47 25.60 0.19 -25.90 16 17 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 18 C 0.03 1.47 5.39 84.65 0.46 1.93 16 19 N -0.91 -51.53 12.93 21.45 0.28 -51.25 16 20 Si 0.94 43.20 29.55 68.60 2.03 45.23 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 24 C -0.19 -8.18 9.88 30.59 0.30 -7.88 16 25 C -0.17 -8.03 9.46 30.60 0.29 -7.74 16 26 H 0.05 1.46 5.97 -2.39 -0.01 1.45 16 27 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.05 1.28 7.90 -2.39 -0.02 1.27 16 29 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 30 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 31 H 0.10 2.16 8.03 -2.39 -0.02 2.14 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.07 2.13 7.88 -2.39 -0.02 2.12 16 35 H 0.34 15.37 7.70 -89.69 -0.69 14.68 16 36 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 37 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 38 H 0.26 14.00 8.32 -92.71 -0.77 13.22 16 39 H 0.09 3.38 8.08 -2.39 -0.02 3.36 16 40 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -56.75 340.29 2.55 -54.20 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.28 Total: 32.93 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 3.18 Total: -50.13 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.94 Total: -82.23 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -56.75 2.55 -54.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716578848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.139 kcal (2) G-P(sol) polarization free energy of solvation -56.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds