Wall clock time and date at job start Mon Mar 30 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 115.55324 * 2 1 4 4 C 1.53004 * 117.51626 * 214.29683 * 2 1 3 5 5 C 1.53000 * 60.00047 * 252.51913 * 4 2 1 6 6 H 1.09004 * 117.51769 * 252.52287 * 5 4 2 7 7 C 1.52998 * 117.50031 * 107.48796 * 5 4 2 8 8 H 1.08997 * 115.55448 * 259.67692 * 7 5 4 9 9 C 1.53002 * 117.51581 * 45.37526 * 7 5 4 10 10 C 1.52997 * 117.49764 * 114.00388 * 7 5 4 11 11 H 1.08999 * 117.50392 * 144.98016 * 10 7 5 12 12 C 1.53005 * 117.49789 * 359.97438 * 10 7 5 13 13 N 1.46908 * 109.46728 * 176.32976 * 12 10 7 14 14 C 1.46903 * 110.99536 * 184.50767 * 13 12 10 15 15 C 1.52997 * 109.46881 * 185.24234 * 14 13 12 16 16 C 1.50704 * 115.54827 * 39.59941 * 15 14 13 17 17 H 1.08000 * 119.99843 * 268.15233 * 16 15 14 18 18 C 1.37869 * 120.00098 * 88.15764 * 16 15 14 19 19 N 1.31517 * 120.00253 * 179.53559 * 18 16 15 20 20 Si 1.86807 * 120.00288 * 359.53444 * 18 16 15 21 21 H 1.48501 * 109.47184 * 91.77127 * 20 18 16 22 22 H 1.48497 * 109.47296 * 211.77670 * 20 18 16 23 23 H 1.48498 * 109.46600 * 331.77358 * 20 18 16 24 24 C 1.53000 * 117.50215 * 253.88936 * 15 14 13 25 25 C 1.53001 * 60.00156 * 252.51254 * 24 15 14 26 26 H 1.08997 * 109.47133 * 269.86975 * 1 2 3 27 27 H 1.08998 * 109.46850 * 29.86597 * 1 2 3 28 28 H 1.08992 * 109.47074 * 149.86807 * 1 2 3 29 29 H 1.09002 * 117.49390 * 145.02973 * 4 2 1 30 30 H 1.08995 * 117.49924 * 0.02562 * 4 2 1 31 31 H 1.09003 * 117.49581 * 359.97438 * 9 7 5 32 32 H 1.08995 * 117.50168 * 214.97230 * 9 7 5 33 33 H 1.08996 * 109.47460 * 296.32648 * 12 10 7 34 34 H 1.08998 * 109.47059 * 56.33562 * 12 10 7 35 35 H 1.00901 * 111.00193 * 308.45770 * 13 12 10 36 36 H 1.08993 * 109.47663 * 305.24600 * 14 13 12 37 37 H 1.09009 * 109.46898 * 65.24693 * 14 13 12 38 38 H 0.96998 * 120.00099 * 180.02562 * 19 18 16 39 39 H 1.09000 * 117.49800 * 359.97438 * 24 15 14 40 40 H 1.08999 * 117.50126 * 145.02261 * 24 15 14 41 41 H 1.08996 * 117.49637 * 252.51483 * 25 24 15 42 42 H 1.08996 * 117.50027 * 107.48453 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3588 -2.1559 1.4718 8 1 0.4036 -1.7864 1.8449 9 6 1.4057 -3.5945 0.9529 10 6 2.0640 -3.2409 2.2881 11 1 1.5731 -3.5850 3.1983 12 6 3.5930 -3.2080 2.3349 13 7 4.0783 -4.2661 3.2311 14 6 5.5376 -4.1974 3.3849 15 6 6.0194 -5.3882 4.2159 16 6 5.3351 -6.7000 3.9295 17 1 4.4638 -6.9900 4.4980 18 6 5.8214 -7.5300 2.9419 19 7 5.2297 -8.6790 2.6981 20 14 7.3208 -7.0227 1.9498 21 1 8.5467 -7.5516 2.6000 22 1 7.2135 -7.5722 0.5745 23 1 7.3940 -5.5409 1.8865 24 6 6.4490 -5.1152 5.6588 25 6 7.5013 -5.4322 4.5943 26 1 -0.3633 -0.0023 1.0276 27 1 -0.3633 0.8912 -0.5117 28 1 -0.3633 -0.8887 -0.5158 29 1 3.1721 -0.8750 -1.2677 30 1 1.6120 -1.8585 -1.2682 31 1 2.0617 -3.8036 0.1078 32 1 0.4815 -4.1714 0.9847 33 1 3.9908 -3.3697 1.3331 34 1 3.9244 -2.2379 2.7054 35 1 3.6176 -4.2201 4.1276 36 1 6.0083 -4.2259 2.4022 37 1 5.8064 -3.2694 3.8898 38 1 5.5721 -9.2631 2.0035 39 1 6.3887 -4.0871 6.0159 40 1 6.2366 -5.8844 6.4013 41 1 7.9810 -6.4100 4.6365 42 1 8.1328 -4.6128 4.2512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716578849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:02 Heat of formation + Delta-G solvation = 70.904726 kcal Electronic energy + Delta-G solvation = -18211.759175 eV Core-core repulsion = 15579.956920 eV Total energy + Delta-G solvation = -2631.802255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.17951 -37.31793 -35.96845 -33.54527 -31.86893 -28.61616 -27.21931 -25.28698 -24.08258 -23.07043 -21.57929 -21.04146 -20.76090 -18.94748 -18.32883 -16.24111 -15.88952 -15.56345 -15.19702 -14.41515 -14.16580 -13.86061 -13.45368 -13.29352 -12.92314 -12.61019 -12.51546 -12.27227 -12.06750 -11.72340 -11.57906 -11.15568 -11.00022 -10.94211 -10.61885 -10.40820 -10.35011 -10.15658 -9.98260 -9.55229 -9.51694 -9.38301 -8.95332 -8.37286 -8.34606 -7.46484 -5.90574 -3.88324 3.39800 3.48642 3.52684 3.61056 3.93293 4.58390 4.59000 4.67848 4.71123 4.86973 5.01813 5.07149 5.18341 5.23143 5.37920 5.47597 5.54605 5.66639 5.70790 5.72695 5.78301 5.86765 5.88887 5.94653 6.03667 6.05776 6.08281 6.16814 6.20129 6.27363 6.28658 6.34522 6.50199 6.54587 6.61243 6.78132 7.11425 7.19887 7.84140 7.98094 8.22485 8.70303 9.12743 9.74064 11.22577 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.004891 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.466666 B = 5723.581595 C = 5956.600231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.154 4.154 3 H 0.099 0.901 4 C -0.173 4.173 5 C -0.117 4.117 6 H 0.104 0.896 7 C -0.130 4.130 8 H 0.103 0.897 9 C -0.163 4.163 10 C -0.131 4.131 11 H 0.105 0.895 12 C 0.092 3.908 13 N -0.654 5.654 14 C 0.098 3.902 15 C 0.006 3.994 16 C -0.451 4.451 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.262 1.262 24 C -0.187 4.187 25 C -0.204 4.204 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.336 0.664 36 H 0.062 0.938 37 H 0.002 0.998 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 16.235 -3.886 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 H 0.117 0.883 4 C -0.210 4.210 5 C -0.135 4.135 6 H 0.122 0.878 7 C -0.148 4.148 8 H 0.121 0.879 9 C -0.200 4.200 10 C -0.149 4.149 11 H 0.123 0.877 12 C -0.037 4.037 13 N -0.284 5.284 14 C -0.032 4.032 15 C 0.005 3.995 16 C -0.489 4.489 17 H 0.094 0.906 18 C -0.124 4.124 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.186 1.186 24 C -0.224 4.224 25 C -0.241 4.241 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.360 15.589 -4.509 17.430 hybrid contribution 1.061 0.938 -0.073 1.418 sum -5.300 16.527 -4.582 17.951 Atomic orbital electron populations 1.21315 0.93031 1.01661 1.01684 1.22341 0.95375 0.94184 1.05358 0.88289 1.23127 1.02321 1.01338 0.94240 1.21784 1.00095 0.98415 0.93255 0.87753 1.21796 0.99767 0.89357 1.03897 0.87866 1.23046 1.02632 0.96229 0.98086 1.22307 0.95142 1.01584 0.95888 0.87673 1.21472 0.91728 0.92190 0.98340 1.60163 1.05213 1.46373 1.16682 1.21660 0.87662 0.94548 0.99284 1.19506 0.91948 0.96239 0.91850 1.20020 1.12747 0.97738 1.18369 0.90588 1.24860 0.96660 0.94541 0.96298 1.69891 1.41078 1.10671 1.32794 0.86882 0.83557 0.79543 0.79073 1.21105 1.22524 1.18646 1.22890 1.05938 0.99451 0.94128 1.22939 0.93814 1.01064 1.06332 0.92271 0.92622 0.92369 0.89168 0.88594 0.88702 0.89124 0.91513 0.96370 0.84609 0.91972 0.98021 0.93008 0.91429 0.89633 0.89469 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.14 37.16 0.34 -0.69 16 2 C -0.15 -1.49 6.41 -90.62 -0.58 -2.07 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.17 -1.81 9.46 -26.73 -0.25 -2.06 16 5 C -0.12 -1.32 5.33 -90.62 -0.48 -1.80 16 6 H 0.10 1.24 6.99 -51.93 -0.36 0.87 16 7 C -0.13 -1.54 5.33 -90.62 -0.48 -2.02 16 8 H 0.10 1.13 6.96 -51.93 -0.36 0.77 16 9 C -0.16 -2.18 9.47 -26.73 -0.25 -2.43 16 10 C -0.13 -1.86 5.93 -90.62 -0.54 -2.40 16 11 H 0.11 1.50 8.07 -51.93 -0.42 1.08 16 12 C 0.09 1.50 4.90 -3.82 -0.02 1.48 16 13 N -0.65 -12.92 5.82 -113.77 -0.66 -13.58 16 14 C 0.10 2.05 5.59 -3.82 -0.02 2.02 16 15 C 0.01 0.13 1.19 -155.66 -0.19 -0.05 16 16 C -0.45 -12.58 8.75 -34.44 -0.30 -12.88 16 17 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 19 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 20 Si 0.88 22.41 25.02 -169.99 -4.25 18.15 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 23 H -0.26 -6.32 5.39 56.52 0.30 -6.02 16 24 C -0.19 -3.83 9.88 -26.73 -0.26 -4.09 16 25 C -0.20 -4.42 7.50 -26.73 -0.20 -4.62 16 26 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.00 7.88 -51.93 -0.41 0.60 16 31 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.15 7.88 -51.93 -0.41 0.74 16 34 H 0.02 0.28 7.43 -51.93 -0.39 -0.11 16 35 H 0.34 6.31 8.67 -39.29 -0.34 5.97 16 36 H 0.06 1.38 6.51 -51.93 -0.34 1.04 16 37 H 0.00 0.03 7.94 -51.92 -0.41 -0.38 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 40 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.09 2.00 7.09 -51.93 -0.37 1.63 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -29.91 330.60 -10.12 -40.03 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.62 Total: 7.26 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -3.34 Total: -29.47 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.11 Total: -40.96 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.25 Total: 18.15 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.91 -10.12 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716578849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.935 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds