Wall clock time and date at job start Mon Mar 30 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 115.55324 * 2 1 4 4 C 1.53004 * 117.51626 * 214.29683 * 2 1 3 5 5 C 1.53000 * 60.00047 * 252.51913 * 4 2 1 6 6 H 1.09004 * 117.51769 * 252.52287 * 5 4 2 7 7 C 1.52998 * 117.50031 * 107.48796 * 5 4 2 8 8 H 1.08997 * 115.55448 * 259.67692 * 7 5 4 9 9 C 1.53002 * 117.51581 * 45.37526 * 7 5 4 10 10 C 1.52997 * 117.49764 * 114.00388 * 7 5 4 11 11 H 1.08999 * 117.50392 * 144.98016 * 10 7 5 12 12 C 1.53005 * 117.49789 * 359.97438 * 10 7 5 13 13 N 1.46908 * 109.46728 * 176.32976 * 12 10 7 14 14 C 1.46903 * 110.99536 * 184.50767 * 13 12 10 15 15 C 1.52997 * 109.46881 * 185.24234 * 14 13 12 16 16 C 1.50704 * 115.54827 * 39.59941 * 15 14 13 17 17 H 1.08000 * 119.99843 * 268.15233 * 16 15 14 18 18 C 1.37869 * 120.00098 * 88.15764 * 16 15 14 19 19 N 1.31517 * 120.00253 * 179.53559 * 18 16 15 20 20 Si 1.86807 * 120.00288 * 359.53444 * 18 16 15 21 21 H 1.48501 * 109.47184 * 91.77127 * 20 18 16 22 22 H 1.48497 * 109.47296 * 211.77670 * 20 18 16 23 23 H 1.48498 * 109.46600 * 331.77358 * 20 18 16 24 24 C 1.53000 * 117.50215 * 253.88936 * 15 14 13 25 25 C 1.53001 * 60.00156 * 252.51254 * 24 15 14 26 26 H 1.08997 * 109.47133 * 269.86975 * 1 2 3 27 27 H 1.08998 * 109.46850 * 29.86597 * 1 2 3 28 28 H 1.08992 * 109.47074 * 149.86807 * 1 2 3 29 29 H 1.09002 * 117.49390 * 145.02973 * 4 2 1 30 30 H 1.08995 * 117.49924 * 0.02562 * 4 2 1 31 31 H 1.09003 * 117.49581 * 359.97438 * 9 7 5 32 32 H 1.08995 * 117.50168 * 214.97230 * 9 7 5 33 33 H 1.08996 * 109.47460 * 296.32648 * 12 10 7 34 34 H 1.08998 * 109.47059 * 56.33562 * 12 10 7 35 35 H 1.00901 * 111.00193 * 308.45770 * 13 12 10 36 36 H 1.08993 * 109.47663 * 305.24600 * 14 13 12 37 37 H 1.09009 * 109.46898 * 65.24693 * 14 13 12 38 38 H 0.96998 * 120.00099 * 180.02562 * 19 18 16 39 39 H 1.09000 * 117.49800 * 359.97438 * 24 15 14 40 40 H 1.08999 * 117.50126 * 145.02261 * 24 15 14 41 41 H 1.08996 * 117.49637 * 252.51483 * 25 24 15 42 42 H 1.08996 * 117.50027 * 107.48453 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3588 -2.1559 1.4718 8 1 0.4036 -1.7864 1.8449 9 6 1.4057 -3.5945 0.9529 10 6 2.0640 -3.2409 2.2881 11 1 1.5731 -3.5850 3.1983 12 6 3.5930 -3.2080 2.3349 13 7 4.0783 -4.2661 3.2311 14 6 5.5376 -4.1974 3.3849 15 6 6.0194 -5.3882 4.2159 16 6 5.3351 -6.7000 3.9295 17 1 4.4638 -6.9900 4.4980 18 6 5.8214 -7.5300 2.9419 19 7 5.2297 -8.6790 2.6981 20 14 7.3208 -7.0227 1.9498 21 1 8.5467 -7.5516 2.6000 22 1 7.2135 -7.5722 0.5745 23 1 7.3940 -5.5409 1.8865 24 6 6.4490 -5.1152 5.6588 25 6 7.5013 -5.4322 4.5943 26 1 -0.3633 -0.0023 1.0276 27 1 -0.3633 0.8912 -0.5117 28 1 -0.3633 -0.8887 -0.5158 29 1 3.1721 -0.8750 -1.2677 30 1 1.6120 -1.8585 -1.2682 31 1 2.0617 -3.8036 0.1078 32 1 0.4815 -4.1714 0.9847 33 1 3.9908 -3.3697 1.3331 34 1 3.9244 -2.2379 2.7054 35 1 3.6176 -4.2201 4.1276 36 1 6.0083 -4.2259 2.4022 37 1 5.8064 -3.2694 3.8898 38 1 5.5721 -9.2631 2.0035 39 1 6.3887 -4.0871 6.0159 40 1 6.2366 -5.8844 6.4013 41 1 7.9810 -6.4100 4.6365 42 1 8.1328 -4.6128 4.2512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716578849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:01 Heat of formation + Delta-G solvation = 53.953760 kcal Electronic energy + Delta-G solvation = -18212.494224 eV Core-core repulsion = 15579.956920 eV Total energy + Delta-G solvation = -2632.537304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.15795 -38.97836 -37.06448 -34.95277 -34.06165 -29.31906 -28.74305 -27.32511 -25.01787 -24.59357 -23.26056 -21.97544 -21.77661 -20.73863 -19.40261 -18.13881 -16.99576 -16.89126 -16.55117 -16.11798 -15.54955 -15.16102 -14.90605 -14.68418 -14.39314 -14.09211 -13.57027 -13.50353 -13.36706 -13.12934 -12.97315 -12.41846 -12.36964 -12.22785 -12.07159 -11.90370 -11.89527 -11.54367 -11.34666 -11.12727 -10.85958 -10.53837 -10.45210 -10.39914 -10.16619 -8.94351 -8.14919 -6.15377 1.37307 1.40437 1.51761 2.46164 2.70577 2.94357 3.17415 3.22120 3.51116 3.72292 3.88132 3.93027 4.08175 4.14789 4.23969 4.38060 4.41098 4.47847 4.51099 4.54303 4.62642 4.64592 4.78233 4.84759 4.87467 4.91854 4.92954 4.98697 5.00216 5.00800 5.11414 5.22349 5.29138 5.35904 5.37010 5.40404 5.48362 5.52591 5.82832 6.36576 6.51627 6.74507 6.89438 7.50288 9.02137 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.004891 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.466666 B = 5723.581595 C = 5956.600231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.134 4.134 6 H 0.100 0.900 7 C -0.100 4.100 8 H 0.118 0.882 9 C -0.173 4.173 10 C -0.149 4.149 11 H 0.102 0.898 12 C 0.101 3.899 13 N -0.680 5.680 14 C 0.107 3.893 15 C -0.024 4.024 16 C -0.439 4.439 17 H 0.030 0.970 18 C 0.017 3.983 19 N -0.959 5.959 20 Si 0.937 3.063 21 H -0.276 1.276 22 H -0.306 1.306 23 H -0.237 1.237 24 C -0.166 4.166 25 C -0.200 4.200 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.034 0.966 35 H 0.339 0.661 36 H 0.048 0.952 37 H 0.031 0.969 38 H 0.258 0.742 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 19.316 -3.936 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 H 0.128 0.872 4 C -0.215 4.215 5 C -0.152 4.152 6 H 0.118 0.882 7 C -0.119 4.119 8 H 0.136 0.864 9 C -0.210 4.210 10 C -0.167 4.167 11 H 0.121 0.879 12 C -0.028 4.028 13 N -0.311 5.311 14 C -0.023 4.023 15 C -0.025 4.025 16 C -0.478 4.478 17 H 0.048 0.952 18 C -0.178 4.178 19 N -0.601 5.601 20 Si 0.764 3.236 21 H -0.202 1.202 22 H -0.234 1.234 23 H -0.160 1.160 24 C -0.203 4.203 25 C -0.238 4.238 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.712 18.704 -4.540 20.076 hybrid contribution 0.771 -0.034 0.019 0.772 sum -4.941 18.670 -4.521 19.835 Atomic orbital electron populations 1.21354 0.92174 1.02216 1.02100 1.22453 0.96025 0.94090 1.03279 0.87157 1.23166 1.02774 1.01935 0.93631 1.21788 1.00290 0.99448 0.93702 0.88216 1.21802 0.99785 0.88551 1.01722 0.86444 1.23070 1.02604 0.98069 0.97241 1.22266 0.94138 1.04083 0.96220 0.87946 1.21388 0.92829 0.91815 0.96756 1.60092 1.04996 1.48613 1.17418 1.21476 0.88155 0.94447 0.98195 1.19459 0.93244 0.94969 0.94829 1.20161 1.11046 0.99774 1.16779 0.95168 1.25653 0.99814 0.94514 0.97810 1.70052 1.43445 1.12401 1.34194 0.85953 0.80152 0.80605 0.76927 1.20182 1.23441 1.15981 1.22919 1.03731 1.01204 0.92416 1.22977 0.93022 1.01414 1.06387 0.91880 0.91231 0.92756 0.88772 0.88936 0.89762 0.88601 0.92899 0.94766 0.84267 0.93335 0.95093 0.93275 0.87848 0.90595 0.91121 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.14 71.98 0.66 -1.10 16 2 C -0.14 -2.35 6.41 -10.79 -0.07 -2.42 16 3 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 4 C -0.18 -3.43 9.46 30.60 0.29 -3.14 16 5 C -0.13 -2.77 5.33 -10.79 -0.06 -2.82 16 6 H 0.10 2.17 6.99 -2.39 -0.02 2.15 16 7 C -0.10 -2.22 5.33 -10.79 -0.06 -2.28 16 8 H 0.12 2.29 6.96 -2.39 -0.02 2.27 16 9 C -0.17 -4.55 9.47 30.60 0.29 -4.27 16 10 C -0.15 -4.13 5.93 -10.79 -0.06 -4.19 16 11 H 0.10 2.89 8.07 -2.39 -0.02 2.87 16 12 C 0.10 3.18 4.90 86.30 0.42 3.60 16 13 N -0.68 -26.38 5.82 -513.86 -2.99 -29.37 16 14 C 0.11 4.22 5.59 86.30 0.48 4.71 16 15 C -0.02 -1.07 1.19 -52.93 -0.06 -1.13 16 16 C -0.44 -25.00 8.75 25.60 0.22 -24.78 16 17 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 18 C 0.02 1.02 5.47 84.65 0.46 1.49 16 19 N -0.96 -61.88 13.96 21.44 0.30 -61.58 16 20 Si 0.94 46.25 25.02 68.60 1.72 47.97 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 23 H -0.24 -10.62 5.39 99.48 0.54 -10.08 16 24 C -0.17 -6.32 9.88 30.59 0.30 -6.02 16 25 C -0.20 -8.08 7.50 30.60 0.23 -7.86 16 26 H 0.06 0.88 7.39 -2.39 -0.02 0.86 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.83 7.88 -2.39 -0.02 0.81 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.84 7.88 -2.39 -0.02 1.82 16 31 H 0.08 2.39 7.88 -2.39 -0.02 2.37 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.80 7.88 -2.39 -0.02 1.78 16 34 H 0.03 0.97 7.43 -2.39 -0.02 0.95 16 35 H 0.34 12.55 8.67 -89.69 -0.78 11.78 16 36 H 0.05 2.03 6.51 -2.39 -0.02 2.02 16 37 H 0.03 1.05 7.94 -2.38 -0.02 1.04 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.10 3.24 8.08 -2.39 -0.02 3.22 16 40 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.07 3.09 7.09 -2.39 -0.02 3.07 16 42 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -65.68 330.60 2.10 -63.58 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.03 Total: 29.62 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 3.05 Total: -50.21 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.69 Total: -90.96 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.72 Total: 47.97 kcal Total: -65.68 2.10 -63.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716578849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.537 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds