Wall clock time and date at job start Mon Mar 30 2020 06:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30546 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48491 * 109.47212 * 270.27343 * 3 2 1 5 5 H 1.48501 * 109.46722 * 30.27701 * 3 2 1 6 6 H 1.48502 * 109.47434 * 150.27243 * 3 2 1 7 7 C 1.40305 * 120.00294 * 180.27328 * 2 1 3 8 8 H 1.07999 * 120.00256 * 179.72816 * 7 2 1 9 9 C 1.41642 * 119.99555 * 359.72833 * 7 2 1 10 10 O 1.21910 * 120.00216 * 359.97438 * 9 7 2 11 11 C 1.47206 * 119.99708 * 179.97438 * 9 7 2 12 12 C 1.36886 * 123.13525 * 359.70774 * 11 9 7 13 13 S 1.70623 * 110.26560 * 179.85960 * 12 11 9 14 14 C 1.75651 * 91.85903 * 0.33816 * 13 12 11 15 15 C 1.32940 * 110.19897 * 359.80510 * 14 13 12 16 16 C 1.50703 * 123.03141 * 180.02562 * 15 14 13 17 17 F 1.39904 * 109.46753 * 359.95997 * 16 15 14 18 18 F 1.39905 * 109.47491 * 119.95580 * 16 15 14 19 19 F 1.39892 * 109.47545 * 239.96221 * 16 15 14 20 20 H 0.97000 * 119.99674 * 359.72828 * 1 2 3 21 21 H 1.08003 * 124.86626 * 0.02562 * 12 11 9 22 22 H 1.07997 * 124.90226 * 179.78259 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.4812 2.0498 -1.4000 5 1 1.4398 2.6509 0.7059 6 1 3.5400 1.4386 0.6943 7 6 2.0071 -1.2150 -0.0058 8 1 3.0870 -1.2150 -0.0102 9 6 1.2988 -2.4417 -0.0058 10 8 0.0797 -2.4417 -0.0004 11 6 2.0349 -3.7165 -0.0125 12 6 3.4016 -3.7913 -0.0247 13 16 3.9043 -5.4218 -0.0253 14 6 2.2434 -5.9934 -0.0193 15 6 1.4034 -4.9631 -0.0129 16 6 -0.0949 -5.1248 -0.0060 17 9 -0.4170 -6.4863 -0.0084 18 9 -0.6238 -4.5227 1.1408 19 9 -0.6350 -4.5159 -1.1437 20 1 -0.4850 0.8401 0.0040 21 1 4.0665 -2.9402 -0.0301 22 1 1.9474 -7.0320 -0.0210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717247125.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:57 Heat of formation + Delta-G solvation = -161.056706 kcal Electronic energy + Delta-G solvation = -16374.626978 eV Core-core repulsion = 12992.611211 eV Total energy + Delta-G solvation = -3382.015767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.002 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.24008 -46.83626 -46.52790 -38.14890 -35.60345 -32.69252 -30.10468 -26.80687 -25.97416 -23.30639 -20.89382 -19.01757 -17.58859 -17.51394 -17.15307 -16.59396 -15.71275 -15.08953 -13.92296 -13.69515 -13.67299 -13.20981 -13.03317 -12.82500 -12.77030 -12.74558 -12.64841 -12.31905 -11.61082 -11.51091 -11.30331 -10.97137 -10.69665 -10.41423 -10.34373 -9.02698 -8.64011 -7.91889 -7.56015 -6.36717 -4.96967 1.19823 1.82473 2.29186 2.55305 3.04451 3.09531 3.12491 3.58229 3.95924 4.41026 4.66674 4.97426 5.29455 5.31832 5.69961 5.83308 5.95065 6.32534 6.70652 6.81971 7.16236 7.94865 8.71459 8.73887 10.24006 10.45271 Molecular weight = 250.00amu Principal moments of inertia in cm(-1) A = 0.025800 B = 0.009533 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.010002 B = 2936.442866 C = 3846.957241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.393 3.607 10 O -0.523 6.523 11 C -0.099 4.099 12 C -0.226 4.226 13 S 0.161 5.839 14 C -0.202 4.202 15 C -0.156 4.156 16 C 0.537 3.463 17 F -0.198 7.198 18 F -0.163 7.163 19 F -0.163 7.163 20 H 0.275 0.725 21 H 0.175 0.825 22 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -7.952 -0.044 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.090 0.910 9 C 0.287 3.713 10 O -0.411 6.411 11 C -0.112 4.112 12 C -0.362 4.362 13 S 0.428 5.572 14 C -0.338 4.338 15 C -0.171 4.171 16 C 0.480 3.520 17 F -0.180 7.180 18 F -0.144 7.144 19 F -0.144 7.144 20 H 0.087 0.913 21 H 0.192 0.808 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.867 -8.615 -0.046 11.017 hybrid contribution -0.942 1.477 0.002 1.752 sum 5.925 -7.139 -0.043 9.277 Atomic orbital electron populations 1.69965 1.07471 1.28239 1.29913 1.25976 0.94677 1.00958 0.92892 0.86350 0.80396 0.80907 0.79192 1.19372 1.20079 1.18570 1.20767 0.94686 0.91342 1.47118 0.91000 1.17714 0.88589 0.84818 0.80213 1.90611 1.14229 1.87691 1.48597 1.21029 0.93335 0.97198 0.99610 1.25791 0.98994 1.00646 1.10779 1.82639 1.05431 0.99040 1.70137 1.25352 0.96769 1.02637 1.09084 1.19250 0.92915 0.95017 1.09909 1.17497 0.87256 0.72187 0.75057 1.93088 1.94238 1.34159 1.96524 1.93222 1.87841 1.83264 1.50055 1.93219 1.87432 1.82969 1.50747 0.91345 0.80756 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.70 11.73 55.56 0.65 -20.04 14 2 C 0.08 2.09 5.50 -17.32 -0.10 1.99 14 3 Si 0.91 18.94 29.56 -169.99 -5.03 13.91 14 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 14 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.51 -13.66 8.91 -37.51 -0.33 -14.00 14 8 H 0.07 1.74 6.44 -52.49 -0.34 1.40 14 9 C 0.39 10.99 6.86 -34.64 -0.24 10.75 14 10 O -0.52 -16.19 11.10 5.00 0.06 -16.14 14 11 C -0.10 -2.29 5.84 -106.18 -0.62 -2.91 14 12 C -0.23 -4.23 10.34 30.24 0.31 -3.91 14 13 S 0.16 2.32 23.08 -107.50 -2.48 -0.16 14 14 C -0.20 -3.33 10.47 28.90 0.30 -3.02 14 15 C -0.16 -3.26 5.29 -105.89 -0.56 -3.83 14 16 C 0.54 11.85 2.78 36.01 0.10 11.95 14 17 F -0.20 -3.71 16.39 2.25 0.04 -3.68 14 18 F -0.16 -3.96 15.59 2.25 0.04 -3.93 14 19 F -0.16 -3.96 15.58 2.25 0.04 -3.92 14 20 H 0.28 7.03 8.29 -40.82 -0.34 6.69 14 21 H 0.18 3.03 6.84 -52.48 -0.36 2.68 14 22 H 0.17 2.27 7.63 -52.49 -0.40 1.87 14 LS Contribution 229.55 15.07 3.46 3.46 Total: -1.00 -31.45 229.55 -4.60 -36.04 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -0.23 Total: -2.57 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.13 Total: -2.98 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.65 Total: -20.04 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.06 Total: -16.14 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 0.11 Total: -11.53 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.48 Total: -0.16 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.45 -4.60 -36.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717247125.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.013 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds