Wall clock time and date at job start Mon Mar 30 2020 06:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30546 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48491 * 109.47212 * 270.27343 * 3 2 1 5 5 H 1.48501 * 109.46722 * 30.27701 * 3 2 1 6 6 H 1.48502 * 109.47434 * 150.27243 * 3 2 1 7 7 C 1.40305 * 120.00294 * 180.27328 * 2 1 3 8 8 H 1.07999 * 120.00256 * 179.72816 * 7 2 1 9 9 C 1.41642 * 119.99555 * 359.72833 * 7 2 1 10 10 O 1.21910 * 120.00216 * 359.97438 * 9 7 2 11 11 C 1.47206 * 119.99708 * 179.97438 * 9 7 2 12 12 C 1.36886 * 123.13525 * 359.70774 * 11 9 7 13 13 S 1.70623 * 110.26560 * 179.85960 * 12 11 9 14 14 C 1.75651 * 91.85903 * 0.33816 * 13 12 11 15 15 C 1.32940 * 110.19897 * 359.80510 * 14 13 12 16 16 C 1.50703 * 123.03141 * 180.02562 * 15 14 13 17 17 F 1.39904 * 109.46753 * 359.95997 * 16 15 14 18 18 F 1.39905 * 109.47491 * 119.95580 * 16 15 14 19 19 F 1.39892 * 109.47545 * 239.96221 * 16 15 14 20 20 H 0.97000 * 119.99674 * 359.72828 * 1 2 3 21 21 H 1.08003 * 124.86626 * 0.02562 * 12 11 9 22 22 H 1.07997 * 124.90226 * 179.78259 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.4812 2.0498 -1.4000 5 1 1.4398 2.6509 0.7059 6 1 3.5400 1.4386 0.6943 7 6 2.0071 -1.2150 -0.0058 8 1 3.0870 -1.2150 -0.0102 9 6 1.2988 -2.4417 -0.0058 10 8 0.0797 -2.4417 -0.0004 11 6 2.0349 -3.7165 -0.0125 12 6 3.4016 -3.7913 -0.0247 13 16 3.9043 -5.4218 -0.0253 14 6 2.2434 -5.9934 -0.0193 15 6 1.4034 -4.9631 -0.0129 16 6 -0.0949 -5.1248 -0.0060 17 9 -0.4170 -6.4863 -0.0084 18 9 -0.6238 -4.5227 1.1408 19 9 -0.6350 -4.5159 -1.1437 20 1 -0.4850 0.8401 0.0040 21 1 4.0665 -2.9402 -0.0301 22 1 1.9474 -7.0320 -0.0210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717247125.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:57 Heat of formation + Delta-G solvation = -181.629279 kcal Electronic energy + Delta-G solvation = -16375.519072 eV Core-core repulsion = 12992.611211 eV Total energy + Delta-G solvation = -3382.907861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.002 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.94387 -48.50680 -48.34629 -39.82228 -37.45509 -34.72033 -31.70329 -28.72722 -27.56391 -24.98660 -22.65158 -20.67445 -19.26580 -19.24347 -18.79239 -18.31777 -17.41342 -16.82899 -15.57334 -15.42002 -15.36091 -14.92264 -14.85329 -14.58158 -14.54064 -14.53057 -14.24225 -13.75431 -13.41392 -13.21998 -12.98131 -12.68422 -12.39204 -12.05812 -12.01809 -10.97873 -10.01392 -9.58749 -9.32433 -8.32739 -7.05252 -0.20247 0.53168 0.87865 0.88924 1.38311 1.43140 1.55009 1.94885 2.20876 2.47695 3.07771 3.38289 3.56665 3.72390 3.97975 4.37080 4.49205 4.80177 5.12727 5.19796 5.25456 5.95428 6.70965 6.78027 8.26391 8.50499 Molecular weight = 250.00amu Principal moments of inertia in cm(-1) A = 0.025800 B = 0.009533 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.010002 B = 2936.442866 C = 3846.957241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.538 4.538 8 H 0.094 0.906 9 C 0.368 3.632 10 O -0.572 6.572 11 C -0.150 4.150 12 C -0.232 4.232 13 S 0.307 5.693 14 C -0.194 4.194 15 C -0.194 4.194 16 C 0.532 3.468 17 F -0.179 7.179 18 F -0.185 7.185 19 F -0.185 7.185 20 H 0.281 0.719 21 H 0.184 0.816 22 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -8.978 -0.048 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.569 4.569 8 H 0.112 0.888 9 C 0.265 3.735 10 O -0.465 6.465 11 C -0.163 4.163 12 C -0.369 4.369 13 S 0.574 5.426 14 C -0.330 4.330 15 C -0.208 4.208 16 C 0.475 3.525 17 F -0.161 7.161 18 F -0.166 7.166 19 F -0.166 7.166 20 H 0.091 0.909 21 H 0.202 0.798 22 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.338 -9.670 -0.050 14.156 hybrid contribution -1.885 1.602 0.000 2.474 sum 8.452 -8.069 -0.049 11.685 Atomic orbital electron populations 1.70127 1.09935 1.29727 1.31604 1.27228 0.95459 1.05484 0.91375 0.85057 0.79121 0.74833 0.79659 1.18419 1.19641 1.16709 1.21304 0.95965 0.91999 1.47631 0.88790 1.18417 0.88519 0.87533 0.79012 1.90555 1.16248 1.89167 1.50485 1.20586 0.95002 0.96051 1.04616 1.26080 0.97727 1.04873 1.08212 1.82173 1.01464 0.93255 1.65709 1.25895 0.98174 1.03336 1.05618 1.19088 0.92058 0.95667 1.13986 1.17778 0.88455 0.72538 0.73697 1.93103 1.94273 1.32329 1.96368 1.93161 1.88378 1.83917 1.51189 1.93158 1.87984 1.83632 1.51863 0.90895 0.79834 0.77876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -46.81 11.73 21.88 0.26 -46.55 14 2 C 0.02 1.27 5.50 85.39 0.47 1.74 14 3 Si 0.99 39.01 29.56 68.60 2.03 41.03 14 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 14 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 14 6 H -0.24 -8.77 7.11 99.48 0.71 -8.07 14 7 C -0.54 -29.64 8.91 23.61 0.21 -29.43 14 8 H 0.09 4.51 6.44 -2.91 -0.02 4.50 14 9 C 0.37 21.47 6.86 25.47 0.17 21.65 14 10 O -0.57 -37.70 11.10 -5.02 -0.06 -37.76 14 11 C -0.15 -6.94 5.84 -20.87 -0.12 -7.07 14 12 C -0.23 -8.12 10.34 67.50 0.70 -7.43 14 13 S 0.31 7.23 23.08 -56.49 -1.30 5.93 14 14 C -0.19 -5.69 10.47 66.65 0.70 -4.99 14 15 C -0.19 -8.03 5.29 -20.67 -0.11 -8.14 14 16 C 0.53 24.17 2.78 71.24 0.20 24.37 14 17 F -0.18 -6.64 16.39 44.97 0.74 -5.90 14 18 F -0.19 -9.52 15.59 44.97 0.70 -8.82 14 19 F -0.18 -9.52 15.58 44.97 0.70 -8.82 14 20 H 0.28 15.04 8.29 -92.71 -0.77 14.27 14 21 H 0.18 5.90 6.84 -2.91 -0.02 5.88 14 22 H 0.20 4.45 7.63 -2.91 -0.02 4.43 14 Total: -1.00 -74.41 229.55 6.57 -67.84 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.29 Total: 2.35 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 2.22 Total: -9.30 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.26 Total: -46.55 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.06 Total: -37.76 kcal Atomic # 9 Polarization: -25.69 SS G_CDS: 2.14 Total: -23.55 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.30 Total: 5.93 kcal Total: -74.41 6.57 -67.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717247125.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.793 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds