Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30548 * 1 3 3 Si 1.86796 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47001 * 270.00185 * 3 2 1 5 5 H 1.48506 * 109.46807 * 29.99986 * 3 2 1 6 6 H 1.48495 * 109.47216 * 149.99564 * 3 2 1 7 7 C 1.40306 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99455 * 180.02562 * 7 2 1 9 9 C 1.41640 * 119.99852 * 0.02562 * 7 2 1 10 10 O 1.21905 * 120.00151 * 359.97438 * 9 7 2 11 11 C 1.47210 * 119.99603 * 180.02562 * 9 7 2 12 12 C 1.36893 * 123.13445 * 359.96900 * 11 9 7 13 13 S 1.70621 * 110.26675 * 180.02562 * 12 11 9 14 14 C 1.75663 * 91.85363 * 359.83138 * 13 12 11 15 15 C 1.50706 * 124.89694 * 180.21104 * 14 13 12 16 16 F 1.39902 * 109.47138 * 270.11360 * 15 14 13 17 17 F 1.39900 * 109.47160 * 30.11348 * 15 14 13 18 18 F 1.39896 * 109.46965 * 150.11278 * 15 14 13 19 19 C 1.32934 * 110.20517 * 0.31087 * 14 13 12 20 20 H 0.96995 * 119.99968 * 0.02562 * 1 2 3 21 21 H 1.08004 * 124.86550 * 0.03016 * 12 11 9 22 22 H 1.08002 * 123.03402 * 179.90770 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6176 0.0000 4 1 2.4870 2.0463 -1.4001 5 1 1.4370 2.6526 0.7001 6 1 3.5370 1.4401 0.7001 7 6 2.0070 -1.2151 0.0005 8 1 3.0870 -1.2150 0.0010 9 6 1.2987 -2.4417 0.0005 10 8 0.0796 -2.4417 0.0005 11 6 2.0348 -3.7166 0.0017 12 6 3.4016 -3.7914 0.0022 13 16 3.9043 -5.4219 0.0028 14 6 2.2432 -5.9934 0.0075 15 6 1.8301 -7.4427 0.0148 16 9 1.7031 -7.8980 -1.3020 17 9 2.8004 -8.2009 0.6788 18 9 0.6034 -7.5746 0.6742 19 6 1.4032 -4.9632 0.0017 20 1 -0.4850 0.8400 -0.0004 21 1 4.0666 -2.9403 0.0022 22 1 0.3294 -5.0790 0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718251851.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = -184.243942 kcal Electronic energy + Delta-G solvation = -15522.118719 eV Core-core repulsion = 12139.097478 eV Total energy + Delta-G solvation = -3383.021241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.002 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.24909 -48.77514 -48.72898 -39.83211 -37.52153 -34.77594 -32.21392 -29.02951 -27.03025 -25.30490 -22.61992 -20.68992 -19.75785 -19.60614 -19.05277 -18.35387 -17.32504 -16.87367 -15.85169 -15.65834 -15.57736 -15.17898 -14.98506 -14.90450 -14.89648 -14.79281 -14.03248 -13.89113 -13.49539 -13.34426 -13.02951 -12.71351 -12.50112 -12.18507 -12.03665 -11.01263 -10.14365 -9.68166 -9.39248 -8.37935 -7.11565 -0.44667 0.28176 0.77046 0.99511 1.39691 1.46000 1.56154 1.57750 2.20387 2.45623 2.61266 3.10490 3.26891 3.64333 4.15314 4.28618 4.37590 4.72432 5.13065 5.17198 5.26240 5.92011 6.66676 6.74504 8.21027 8.46110 Molecular weight = 250.00amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.006014 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.271049 B = 4654.714093 C = 5109.479171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.021 3.979 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.100 0.900 9 C 0.378 3.622 10 O -0.599 6.599 11 C -0.182 4.182 12 C -0.187 4.187 13 S 0.313 5.687 14 C -0.356 4.356 15 C 0.554 3.446 16 F -0.173 7.173 17 F -0.168 7.168 18 F -0.176 7.176 19 C -0.038 4.038 20 H 0.283 0.717 21 H 0.196 0.804 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.585 -8.875 0.033 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.198 4.198 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.165 1.165 7 C -0.567 4.567 8 H 0.118 0.882 9 C 0.276 3.724 10 O -0.494 6.494 11 C -0.195 4.195 12 C -0.325 4.325 13 S 0.580 5.420 14 C -0.474 4.474 15 C 0.498 3.502 16 F -0.155 7.155 17 F -0.149 7.149 18 F -0.157 7.157 19 C -0.071 4.071 20 H 0.093 0.907 21 H 0.213 0.787 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.277 -9.625 0.036 14.826 hybrid contribution -1.790 1.241 -0.016 2.178 sum 9.487 -8.384 0.020 12.661 Atomic orbital electron populations 1.70116 1.10105 1.30020 1.31314 1.27316 0.95502 1.05770 0.91216 0.85010 0.79130 0.74475 0.79799 1.18292 1.19610 1.16491 1.21379 0.96257 0.91852 1.47175 0.88225 1.18356 0.88056 0.87507 0.78437 1.90495 1.17128 1.89512 1.52235 1.20746 0.94546 0.96889 1.07332 1.26486 0.98634 1.04005 1.03369 1.82214 0.99115 0.93856 1.66784 1.24657 1.02387 0.95355 1.24988 1.17026 0.74643 0.84738 0.73827 1.93221 1.95740 1.90292 1.36205 1.93203 1.62812 1.78057 1.80840 1.93199 1.44981 1.96371 1.81193 1.20023 1.01008 0.90879 0.95158 0.90674 0.78684 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.79 11.73 21.88 0.26 -45.53 14 2 C 0.02 1.11 5.50 85.39 0.47 1.58 14 3 Si 1.00 37.47 29.56 68.60 2.03 39.49 14 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 14 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 14 6 H -0.24 -8.27 7.11 99.48 0.71 -7.56 14 7 C -0.54 -28.56 8.91 23.61 0.21 -28.35 14 8 H 0.10 4.54 6.44 -2.91 -0.02 4.52 14 9 C 0.38 21.57 6.91 25.47 0.18 21.75 14 10 O -0.60 -39.74 15.25 -5.01 -0.08 -39.81 14 11 C -0.18 -8.21 5.85 -20.87 -0.12 -8.34 14 12 C -0.19 -6.41 10.34 67.50 0.70 -5.71 14 13 S 0.31 8.28 22.77 -56.49 -1.29 7.00 14 14 C -0.36 -11.85 5.92 24.51 0.15 -11.71 14 15 C 0.55 16.51 3.52 71.24 0.25 16.76 14 16 F -0.17 -5.08 17.30 44.97 0.78 -4.31 14 17 F -0.17 -4.43 17.04 44.97 0.77 -3.66 14 18 F -0.18 -5.59 16.91 44.97 0.76 -4.83 14 19 C -0.04 -1.57 9.31 21.46 0.20 -1.37 14 20 H 0.28 14.69 8.29 -92.71 -0.77 13.92 14 21 H 0.20 5.84 6.84 -2.91 -0.02 5.82 14 22 H 0.13 5.85 7.93 -2.91 -0.02 5.83 14 Total: -1.00 -68.81 237.64 6.54 -62.26 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.29 Total: 4.78 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 2.03 Total: -15.38 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.26 Total: -45.53 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.08 Total: -39.81 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 2.30 Total: -12.80 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: 8.28 SS G_CDS: -1.29 Total: 7.00 kcal Total: -68.81 6.54 -62.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718251851.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.983 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds