Wall clock time and date at job start Mon Mar 30 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.50573 * 30.83371 * 3 2 1 5 5 C 1.53119 * 109.50066 * 150.95425 * 3 2 1 6 6 C 1.53116 * 109.15728 * 177.59377 * 5 3 2 7 7 C 1.53030 * 109.28186 * 302.34320 * 6 5 3 8 8 N 1.46846 * 109.52356 * 59.17821 * 7 6 5 9 9 C 1.46903 * 111.00444 * 174.16335 * 8 7 6 10 10 C 1.53002 * 109.47313 * 210.99402 * 9 8 7 11 11 C 1.52996 * 109.46943 * 54.58754 * 10 9 8 12 12 C 1.52997 * 109.46897 * 294.58490 * 10 9 8 13 13 C 1.52996 * 109.46925 * 174.58733 * 10 9 8 14 14 C 1.50698 * 109.46911 * 180.02562 * 13 10 9 15 15 H 1.07998 * 120.00298 * 0.02562 * 14 13 10 16 16 C 1.37885 * 120.00230 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99574 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00357 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47129 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47228 * 59.99722 * 18 16 14 21 21 H 1.48500 * 109.46868 * 299.99775 * 18 16 14 22 22 C 1.46850 * 111.20070 * 298.26072 * 8 7 6 23 23 H 4.18794 * 15.03226 * 0.02562 * 4 2 1 24 24 H 1.08997 * 109.52382 * 297.49723 * 5 3 2 25 25 H 1.09001 * 109.52367 * 57.68627 * 5 3 2 26 26 H 1.09001 * 109.50521 * 62.28892 * 6 5 3 27 27 H 1.09007 * 109.50046 * 182.36315 * 6 5 3 28 28 H 1.09002 * 109.46485 * 299.16587 * 7 6 5 29 29 H 1.09004 * 109.46784 * 179.19754 * 7 6 5 30 30 H 1.08996 * 109.47253 * 90.99254 * 9 8 7 31 31 H 1.09006 * 109.46706 * 330.99113 * 9 8 7 32 32 H 1.09003 * 109.47121 * 185.51845 * 11 10 9 33 33 H 1.08998 * 109.47401 * 305.51387 * 11 10 9 34 34 H 1.08998 * 109.47465 * 65.51471 * 11 10 9 35 35 H 1.08994 * 109.47532 * 313.21931 * 12 10 9 36 36 H 1.09005 * 109.47067 * 73.22247 * 12 10 9 37 37 H 1.08998 * 109.46983 * 193.21403 * 12 10 9 38 38 H 1.08998 * 109.47228 * 59.99906 * 13 10 9 39 39 H 1.09003 * 109.47434 * 299.99569 * 13 10 9 40 40 H 0.97001 * 120.00225 * 359.97438 * 17 16 14 41 41 H 1.08999 * 109.46287 * 181.75244 * 22 8 7 42 42 H 1.08998 * 109.46030 * 301.73969 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0104 -0.8814 -0.5266 5 6 3.1566 1.2627 -0.7008 6 6 4.6866 1.2852 -0.6434 7 6 5.1384 1.2292 0.8176 8 7 4.6253 0.0039 1.4433 9 6 5.1532 -0.1528 2.8052 10 6 5.2825 -1.6415 3.1340 11 6 6.1280 -2.3293 2.0604 12 6 3.8916 -2.2777 3.1731 13 6 5.9570 -1.8059 4.4974 14 6 6.0848 -3.2721 4.8210 15 1 5.7217 -4.0127 4.1238 16 6 6.6654 -3.6683 6.0073 17 7 7.1080 -2.7666 6.8561 18 14 6.8245 -5.4858 6.4081 19 1 7.4790 -5.6454 7.7314 20 1 7.6464 -6.1524 5.3662 21 1 5.4750 -6.1045 6.4450 22 6 3.1569 -0.0181 1.4425 23 1 -1.0500 -0.0006 -0.0009 24 1 2.8311 1.2588 -1.7410 25 1 2.7602 2.1445 -0.1974 26 1 5.0836 0.4238 -1.1804 27 1 5.0545 2.2022 -1.1038 28 1 4.7525 2.0982 1.3507 29 1 6.2275 1.2307 0.8613 30 1 4.4733 0.3184 3.5149 31 1 6.1330 0.3203 2.8716 32 1 6.1389 -3.4044 2.2400 33 1 5.7005 -2.1295 1.0779 34 1 7.1470 -1.9443 2.0984 35 1 3.2208 -1.6491 3.7588 36 1 3.5067 -2.3724 2.1577 37 1 3.9564 -3.2649 3.6306 38 1 5.3546 -1.3158 5.2623 39 1 6.9479 -1.3526 4.4696 40 1 7.0264 -1.8228 6.6474 41 1 2.8069 -0.9226 1.9400 42 1 2.7804 0.8568 1.9724 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848923815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:07 Heat of formation + Delta-G solvation = 16.220386 kcal Electronic energy + Delta-G solvation = -18877.271375 eV Core-core repulsion = 16243.097829 eV Total energy + Delta-G solvation = -2634.173546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63166 -38.18979 -35.40933 -34.43697 -32.90779 -31.16747 -28.55845 -28.13491 -27.56598 -25.21728 -24.47660 -23.54861 -20.92648 -20.01269 -18.89386 -18.44018 -16.92123 -16.34243 -16.19203 -15.68439 -15.54868 -15.24595 -14.72117 -14.68221 -14.55051 -13.98575 -13.84139 -13.39746 -13.29299 -12.90395 -12.73630 -12.57684 -12.48783 -12.32881 -11.97344 -11.92801 -11.84380 -11.66856 -11.56637 -11.39733 -11.17181 -10.97398 -10.77183 -10.47155 -10.37860 -9.23562 -8.58512 -6.26070 1.53656 1.62113 1.80362 1.84932 1.91546 2.60466 2.89216 3.24391 3.51072 3.87487 3.91706 4.00452 4.08377 4.17720 4.31372 4.32799 4.35706 4.59246 4.60645 4.66596 4.70138 4.77153 4.89037 4.93718 4.96199 5.02921 5.07667 5.11476 5.15056 5.17772 5.23058 5.35449 5.39658 5.42777 5.54629 5.64116 5.73683 6.05014 6.16378 6.22609 6.30009 6.69382 6.70877 7.53365 8.81591 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.005000 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.292875 B = 5599.015463 C = 6033.456492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.213 4.213 3 C 0.026 3.974 4 H 0.098 0.902 5 C -0.105 4.105 6 C -0.107 4.107 7 C 0.048 3.952 8 N -0.529 5.529 9 C 0.076 3.924 10 C -0.043 4.043 11 C -0.103 4.103 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.588 4.588 15 H 0.057 0.943 16 C -0.045 4.045 17 N -0.946 5.946 18 Si 1.112 2.888 19 H -0.288 1.288 20 H -0.270 1.270 21 H -0.270 1.270 22 C 0.053 3.947 23 H 0.246 0.754 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.043 0.957 38 H -0.023 1.023 39 H -0.019 1.019 40 H 0.252 0.748 41 H 0.084 0.916 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 7.609 -16.811 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.213 4.213 3 C 0.007 3.993 4 H 0.116 0.884 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.079 4.079 8 N -0.253 5.253 9 C -0.052 4.052 10 C -0.044 4.044 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.014 4.014 14 C -0.626 4.626 15 H 0.075 0.925 16 C -0.241 4.241 17 N -0.585 5.585 18 Si 0.934 3.066 19 H -0.213 1.213 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.075 4.075 23 H 0.262 0.738 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.062 0.938 38 H -0.005 1.005 39 H 0.000 1.000 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.684 6.173 -15.966 19.195 hybrid contribution -0.803 1.984 0.047 2.141 sum -9.487 8.157 -15.919 20.248 Atomic orbital electron populations 1.25687 0.96749 1.00031 0.99299 1.23385 0.94907 1.01347 1.01711 1.18273 0.84039 1.00769 0.96190 0.88411 1.21562 0.96032 0.95719 1.00904 1.21558 0.94663 1.03460 0.94816 1.22273 1.00151 0.89702 0.95804 1.61806 1.07298 1.37578 1.18582 1.22057 0.98546 0.96273 0.88323 1.20322 0.95700 0.93617 0.94716 1.21459 0.97693 0.98762 0.98084 1.21861 0.95408 1.00166 1.00390 1.19191 0.93101 0.96095 0.92979 1.22380 1.41374 0.93023 1.05862 0.92499 1.27293 0.93411 1.09886 0.93504 1.70914 1.46880 1.02094 1.38624 0.82993 0.77490 0.69909 0.76186 1.21344 1.19488 1.19575 1.22414 0.87576 1.01478 0.96006 0.73765 0.90175 0.92284 0.90706 0.89224 0.95334 0.90535 0.95740 0.92003 0.94685 0.90811 0.95300 0.94684 0.91347 0.93830 1.00452 1.00039 0.93843 0.89742 0.95853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.90 19.25 74.32 1.43 -2.47 16 2 C -0.21 -4.90 12.56 31.12 0.39 -4.51 16 3 C 0.03 0.58 2.73 -12.55 -0.03 0.54 16 4 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 5 C -0.10 -1.92 5.24 30.67 0.16 -1.76 16 6 C -0.11 -1.89 6.09 30.64 0.19 -1.71 16 7 C 0.05 1.11 5.36 86.32 0.46 1.57 16 8 N -0.53 -14.87 3.40 -896.34 -3.04 -17.92 16 9 C 0.08 2.65 4.24 86.30 0.37 3.01 16 10 C -0.04 -1.75 0.61 -52.18 -0.03 -1.78 16 11 C -0.10 -3.99 7.95 71.98 0.57 -3.42 16 12 C -0.12 -4.69 6.87 71.98 0.49 -4.19 16 13 C 0.02 1.25 3.35 29.85 0.10 1.35 16 14 C -0.59 -33.28 7.53 25.60 0.19 -33.09 16 15 H 0.06 3.13 5.78 -2.91 -0.02 3.11 16 16 C -0.04 -2.62 5.46 84.66 0.46 -2.16 16 17 N -0.95 -59.97 13.65 21.45 0.29 -59.68 16 18 Si 1.11 51.27 29.90 68.60 2.05 53.32 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 C 0.05 1.42 4.17 86.33 0.36 1.78 16 23 H 0.25 2.76 7.80 -4.42 -0.03 2.73 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 1.75 7.90 -2.38 -0.02 1.73 16 30 H 0.02 0.88 7.77 -2.39 -0.02 0.86 16 31 H 0.06 2.17 7.62 -2.38 -0.02 2.15 16 32 H 0.03 1.45 6.81 -2.39 -0.02 1.43 16 33 H 0.07 2.49 7.27 -2.39 -0.02 2.47 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.03 1.31 7.67 -2.39 -0.02 1.30 16 36 H 0.07 2.30 6.29 -2.38 -0.01 2.28 16 37 H 0.04 1.87 6.30 -2.39 -0.02 1.86 16 38 H -0.02 -1.30 8.01 -2.39 -0.02 -1.31 16 39 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 40 H 0.25 16.24 7.22 -92.71 -0.67 15.58 16 41 H 0.08 2.50 4.16 -2.39 -0.01 2.49 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -65.90 323.43 5.47 -60.42 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.06 Total: 10.69 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 5.11 Total: -46.84 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.75 Total: -77.60 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -65.90 5.47 -60.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848923815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.645 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds