Wall clock time and date at job start Mon Mar 30 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46747 * 160.12525 * 3 2 1 5 5 H 1.09000 * 110.62901 * 305.69734 * 4 3 2 6 6 C 1.55141 * 110.70654 * 68.80401 * 4 3 2 7 7 C 1.55109 * 101.55918 * 153.90448 * 6 4 3 8 8 N 1.47851 * 104.90851 * 323.15917 * 7 6 4 9 9 C 1.46894 * 111.00270 * 146.23739 * 8 7 6 10 10 C 1.52994 * 109.47024 * 169.05946 * 9 8 7 11 11 C 1.53002 * 109.47446 * 306.22141 * 10 9 8 12 12 C 1.53004 * 109.47336 * 66.22482 * 10 9 8 13 13 C 1.53007 * 109.46924 * 186.22263 * 10 9 8 14 14 C 1.50699 * 109.47013 * 179.97438 * 13 10 9 15 15 H 1.08008 * 120.00221 * 0.02562 * 14 13 10 16 16 C 1.37880 * 120.00333 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00547 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99483 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46778 * 90.00034 * 18 16 14 20 20 H 1.48499 * 109.46784 * 209.99630 * 18 16 14 21 21 H 1.48490 * 109.47156 * 329.99881 * 18 16 14 22 22 C 1.47443 * 108.56231 * 23.96991 * 8 7 6 23 23 H 4.44650 * 5.63328 * 179.97438 * 4 1 2 24 24 H 1.08993 * 109.46990 * 280.12335 * 3 2 1 25 25 H 1.08998 * 109.47689 * 40.12895 * 3 2 1 26 26 H 1.08993 * 110.99193 * 272.12823 * 6 4 3 27 27 H 1.09005 * 110.98841 * 35.94411 * 6 4 3 28 28 H 1.08995 * 110.42600 * 204.24347 * 7 6 4 29 29 H 1.08997 * 110.31131 * 82.02075 * 7 6 4 30 30 H 1.08999 * 109.47289 * 289.06325 * 9 8 7 31 31 H 1.09007 * 109.47163 * 49.05898 * 9 8 7 32 32 H 1.08995 * 109.46952 * 64.81367 * 11 10 9 33 33 H 1.09000 * 109.47391 * 184.82230 * 11 10 9 34 34 H 1.09004 * 109.46484 * 304.81869 * 11 10 9 35 35 H 1.08998 * 109.46912 * 49.85870 * 12 10 9 36 36 H 1.08997 * 109.47350 * 169.86221 * 12 10 9 37 37 H 1.08997 * 109.46513 * 289.86411 * 12 10 9 38 38 H 1.09005 * 109.47062 * 299.99863 * 13 10 9 39 39 H 1.09003 * 109.47192 * 60.00189 * 13 10 9 40 40 H 0.96999 * 120.00212 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.89132 * 239.60676 * 22 8 7 42 42 H 1.09006 * 109.88999 * 118.41486 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.3576 -0.4904 5 1 2.7220 1.6028 -1.4601 6 6 2.8430 2.4682 0.5467 7 6 3.9576 3.5024 0.2399 8 7 5.1475 2.6911 -0.0946 9 6 5.9701 3.3580 -1.1126 10 6 7.3138 2.6368 -1.2352 11 6 7.9683 2.5396 0.1443 12 6 7.0885 1.2300 -1.7931 13 6 8.2284 3.4194 -2.1796 14 6 9.5522 2.7093 -2.2999 15 1 9.7238 1.7913 -1.7574 16 6 10.5439 3.2309 -3.1034 17 7 11.6993 2.6115 -3.2080 18 14 10.2467 4.8183 -4.0423 19 1 10.6611 5.9731 -3.2058 20 1 11.0398 4.8066 -5.2977 21 1 8.8033 4.9369 -4.3697 22 6 4.6968 1.3678 -0.5633 23 1 -1.0502 -0.0005 0.0000 24 1 3.0094 -0.1798 1.0116 25 1 3.0098 -0.7849 -0.6623 26 1 1.8541 2.8939 0.3771 27 1 2.9336 2.0887 1.5645 28 1 4.1540 4.1209 1.1155 29 1 3.6726 4.1255 -0.6078 30 1 5.4539 3.3303 -2.0722 31 1 6.1395 4.3946 -0.8210 32 1 7.3582 1.9105 0.7924 33 1 8.9622 2.1031 0.0451 34 1 8.0508 3.5361 0.5782 35 1 6.4652 1.2885 -2.6853 36 1 8.0488 0.7826 -2.0493 37 1 6.5909 0.6167 -1.0418 38 1 7.7622 3.4886 -3.1625 39 1 8.3890 4.4216 -1.7822 40 1 12.3968 2.9782 -3.7735 41 1 5.1036 0.5880 0.0805 42 1 5.0203 1.2088 -1.5920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862445211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:13 Heat of formation + Delta-G solvation = 30.162040 kcal Electronic energy + Delta-G solvation = -18650.570838 eV Core-core repulsion = 16017.001847 eV Total energy + Delta-G solvation = -2633.568990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69974 -38.01667 -35.40901 -34.34323 -32.30063 -30.77769 -29.18238 -28.59863 -27.45726 -25.97670 -24.08769 -21.95477 -21.25152 -19.49598 -18.98283 -18.81075 -17.04260 -16.61148 -16.18408 -15.40981 -15.19313 -15.08697 -14.89103 -14.46897 -14.34431 -14.08261 -13.91765 -13.56400 -13.23266 -12.94046 -12.88569 -12.55561 -12.31519 -12.24168 -12.08705 -12.01721 -11.71917 -11.62171 -11.57484 -11.26176 -11.01364 -10.90744 -10.86721 -10.69347 -10.69018 -9.11390 -8.20923 -6.20844 1.36080 1.37364 1.48488 1.93118 1.97901 2.39988 3.13132 3.14114 3.45446 3.76194 3.80067 4.05557 4.15308 4.20604 4.37114 4.46543 4.53292 4.57845 4.65344 4.79574 4.85086 4.87954 4.92361 4.94689 5.02732 5.03995 5.11090 5.15685 5.18069 5.22565 5.26358 5.40525 5.40860 5.48050 5.56679 5.63894 5.77589 5.84755 6.19608 6.21967 6.44016 6.76702 6.86183 7.41327 8.95297 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.004489 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.305805 B = 6236.473170 C = 6386.608542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.209 4.209 3 C -0.002 4.002 4 C -0.099 4.099 5 H 0.070 0.930 6 C -0.113 4.113 7 C 0.039 3.961 8 N -0.529 5.529 9 C 0.070 3.930 10 C -0.046 4.046 11 C -0.104 4.104 12 C -0.134 4.134 13 C -0.002 4.002 14 C -0.502 4.502 15 H 0.045 0.955 16 C 0.001 3.999 17 N -0.955 5.955 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.250 1.250 22 C 0.034 3.966 23 H 0.241 0.759 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.201 -1.363 6.828 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.209 4.209 3 C -0.039 4.039 4 C -0.119 4.119 5 H 0.089 0.911 6 C -0.151 4.151 7 C -0.088 4.088 8 N -0.252 5.252 9 C -0.058 4.058 10 C -0.047 4.047 11 C -0.162 4.162 12 C -0.191 4.191 13 C -0.040 4.040 14 C -0.540 4.540 15 H 0.063 0.937 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.214 1.214 21 H -0.174 1.174 22 C -0.093 4.093 23 H 0.257 0.743 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.715 -1.395 7.187 22.916 hybrid contribution 0.088 0.754 -1.439 1.627 sum -21.627 -0.640 5.749 22.387 Atomic orbital electron populations 1.25635 0.96859 1.00193 1.00668 1.23560 0.95293 1.01071 1.00954 1.18738 0.84374 0.97348 1.03391 1.22349 0.95440 0.94917 0.99179 0.91117 1.22731 0.97858 0.95062 0.99402 1.23114 0.89160 0.96091 1.00479 1.63532 1.18570 1.03075 1.40043 1.22233 0.93291 0.97624 0.92675 1.20317 0.93275 0.95439 0.95663 1.21466 0.98773 1.00441 0.95499 1.22150 1.00523 0.96549 0.99844 1.19581 0.94095 0.95338 0.95013 1.21427 0.97736 1.08975 1.25845 0.93667 1.25915 0.94862 1.00739 0.97967 1.70061 1.06027 1.42027 1.41569 0.85805 0.79269 0.80226 0.78202 1.19614 1.21424 1.17399 1.23396 0.92934 0.92226 1.00732 0.74289 0.88511 0.88711 0.90521 0.90282 0.89999 0.93944 0.95213 0.91517 0.91728 0.95429 0.94354 0.93572 0.94807 0.90561 0.97073 0.97128 0.92904 0.89917 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.47 19.25 74.32 1.43 -2.04 16 2 C -0.21 -3.88 12.95 31.13 0.40 -3.47 16 3 C 0.00 -0.03 5.07 28.79 0.15 0.12 16 4 C -0.10 -1.88 2.91 -9.61 -0.03 -1.90 16 5 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 6 C -0.11 -2.03 6.16 32.05 0.20 -1.83 16 7 C 0.04 0.84 6.69 86.84 0.58 1.42 16 8 N -0.53 -13.81 4.23 -885.12 -3.74 -17.55 16 9 C 0.07 2.19 3.85 86.30 0.33 2.52 16 10 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 11 C -0.10 -4.01 7.98 71.98 0.57 -3.43 16 12 C -0.13 -4.86 6.77 71.98 0.49 -4.37 16 13 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 14 C -0.50 -28.42 8.00 25.60 0.20 -28.22 16 15 H 0.05 2.81 6.00 -2.91 -0.02 2.79 16 16 C 0.00 0.04 5.47 84.66 0.46 0.51 16 17 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 18 Si 0.94 45.07 27.47 68.60 1.88 46.95 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 22 C 0.03 0.79 4.45 86.65 0.39 1.18 16 23 H 0.24 2.08 7.80 -4.41 -0.03 2.05 16 24 H 0.10 1.47 8.06 -2.39 -0.02 1.45 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.38 7.98 -2.38 -0.02 1.36 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.04 0.91 7.81 -2.39 -0.02 0.89 16 30 H 0.03 0.92 7.91 -2.39 -0.02 0.90 16 31 H 0.07 2.08 8.07 -2.38 -0.02 2.06 16 32 H 0.06 2.19 7.59 -2.39 -0.02 2.17 16 33 H 0.03 1.21 6.47 -2.39 -0.02 1.20 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.56 7.25 -2.39 -0.02 1.55 16 36 H 0.03 1.46 6.35 -2.39 -0.02 1.44 16 37 H 0.08 2.33 5.15 -2.39 -0.01 2.32 16 38 H 0.01 0.52 7.20 -2.38 -0.02 0.50 16 39 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 40 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.08 1.85 7.13 -2.39 -0.02 1.83 16 42 H 0.07 1.68 4.66 -2.38 -0.01 1.67 16 Total: -1.00 -65.41 321.68 4.59 -60.82 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.91 Total: 11.28 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 5.24 Total: -41.36 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -3.44 Total: -77.68 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -65.41 4.59 -60.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862445211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.981 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds