Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27630 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27546 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27973 * 3 2 1 7 7 C 1.38805 * 119.99813 * 180.28070 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71919 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72287 * 7 2 1 10 10 C 1.76203 * 100.00070 * 179.97438 * 9 7 2 11 11 C 1.39719 * 120.53911 * 180.02562 * 10 9 7 12 12 C 1.38129 * 118.32021 * 179.97438 * 11 10 9 13 13 C 1.50705 * 120.40387 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.46672 * 90.00068 * 13 12 11 15 15 F 1.39896 * 109.47394 * 210.00213 * 13 12 11 16 16 F 1.39900 * 109.46975 * 330.00452 * 13 12 11 17 17 N 1.32570 * 119.19843 * 359.97438 * 12 11 10 18 18 C 1.31808 * 121.02739 * 359.97438 * 17 12 11 19 19 N 1.31719 * 121.84490 * 359.73823 * 18 17 12 20 20 H 0.97000 * 120.00178 * 359.72484 * 1 2 3 21 21 H 1.08005 * 120.84143 * 359.94988 * 11 10 9 22 22 H 1.08002 * 119.07507 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4912 2.0497 -1.4001 5 1 1.4498 2.6510 0.7059 6 1 3.5500 1.4385 0.6941 7 6 2.0095 -1.2021 -0.0059 8 1 1.4694 -2.1374 -0.0059 9 16 3.7714 -1.2021 -0.0133 10 6 4.0774 -2.9374 -0.0181 11 6 5.3858 -3.4275 -0.0240 12 6 5.5728 -4.7961 -0.0271 13 6 6.9639 -5.3758 -0.0329 14 9 7.3988 -5.5575 1.2843 15 9 6.9527 -6.6084 -0.6945 16 9 7.8314 -4.4996 -0.6938 17 7 4.5137 -5.5936 -0.0238 18 6 3.2916 -5.1000 -0.0171 19 7 3.0662 -3.8022 -0.0084 20 1 -0.4850 0.8400 0.0040 21 1 6.2296 -2.7534 -0.0266 22 1 2.4515 -5.7786 -0.0150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919807969.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -108.296084 kcal Electronic energy + Delta-G solvation = -15447.520461 eV Core-core repulsion = 12100.085317 eV Total energy + Delta-G solvation = -3347.435144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.008 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.12018 -47.66311 -47.56631 -40.41425 -33.66689 -32.85432 -32.03915 -27.12974 -26.12020 -24.17395 -22.98427 -19.27443 -18.59790 -18.49328 -17.73048 -17.02504 -15.48619 -15.35710 -15.20274 -14.65917 -14.45837 -14.24623 -14.13365 -14.02803 -13.73962 -13.72505 -13.11764 -12.34263 -11.91550 -11.47623 -11.26794 -10.91575 -10.67598 -10.31150 -9.82597 -9.34751 -9.27759 -8.83661 -7.52768 -6.64063 -4.43199 0.97659 1.17614 2.24215 2.55093 3.00942 3.08089 3.14466 3.55821 3.84925 3.89283 3.98409 4.14829 4.46344 4.71592 4.77230 4.95479 5.17006 5.55625 5.64543 6.48365 7.16459 7.61202 8.36092 8.47673 8.74054 10.43494 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.044811 B = 0.006041 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.702336 B = 4633.521551 C = 5083.722668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.100 3.900 3 Si 0.845 3.155 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.238 1.238 7 C -0.533 4.533 8 H 0.128 0.872 9 S 0.075 5.925 10 C 0.157 3.843 11 C -0.188 4.188 12 C 0.089 3.911 13 C 0.527 3.473 14 F -0.172 7.172 15 F -0.165 7.165 16 F -0.171 7.171 17 N -0.531 5.531 18 C 0.317 3.683 19 N -0.494 5.494 20 H 0.278 0.722 21 H 0.151 0.849 22 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.053 -5.597 -0.010 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.113 4.113 3 Si 0.668 3.332 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.162 1.162 7 C -0.681 4.681 8 H 0.146 0.854 9 S 0.322 5.678 10 C -0.099 4.099 11 C -0.221 4.221 12 C -0.057 4.057 13 C 0.471 3.529 14 F -0.153 7.153 15 F -0.146 7.146 16 F -0.152 7.152 17 N -0.251 5.251 18 C 0.025 3.975 19 N -0.214 5.214 20 H 0.088 0.912 21 H 0.169 0.831 22 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.791 -4.967 -0.003 11.880 hybrid contribution 0.136 0.178 -0.003 0.224 sum 10.927 -4.790 -0.007 11.931 Atomic orbital electron populations 1.69867 1.05913 1.28412 1.44078 1.24854 0.94721 0.98765 0.92916 0.86983 0.81789 0.83973 0.80424 1.18492 1.18753 1.16219 1.22864 0.87112 0.99706 1.58407 0.85393 1.83103 1.12348 0.92605 1.79720 1.24024 0.89978 1.02276 0.93583 1.22016 0.98927 0.95160 1.06038 1.20873 0.92880 0.91303 1.00649 1.17851 0.85034 0.75967 0.74048 1.93225 1.90805 1.95236 1.36039 1.93215 1.96761 1.43931 1.80740 1.93204 1.71767 1.69245 1.81028 1.67924 0.99340 1.39785 1.18069 1.24944 0.92399 0.90388 0.89783 1.68930 1.34085 1.03237 1.15147 0.91159 0.83124 0.78467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.44 13.96 55.49 0.77 -22.67 14 2 C 0.10 2.61 5.50 -17.46 -0.10 2.52 14 3 Si 0.84 18.42 27.74 -169.99 -4.71 13.70 14 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 14 5 H -0.26 -5.60 7.11 56.52 0.40 -5.20 14 6 H -0.24 -4.91 6.74 56.52 0.38 -4.53 14 7 C -0.53 -14.01 9.82 30.94 0.30 -13.71 14 8 H 0.13 3.69 6.81 -52.49 -0.36 3.33 14 9 S 0.07 1.63 19.65 -107.50 -2.11 -0.48 14 10 C 0.16 3.21 7.00 -16.47 -0.12 3.09 14 11 C -0.19 -3.26 9.30 -39.07 -0.36 -3.62 14 12 C 0.09 1.50 6.32 -82.31 -0.52 0.98 14 13 C 0.53 7.72 3.45 36.01 0.12 7.85 14 14 F -0.17 -2.47 17.30 2.25 0.04 -2.43 14 15 F -0.17 -2.46 17.07 2.25 0.04 -2.42 14 16 F -0.17 -2.32 16.53 2.25 0.04 -2.29 14 17 N -0.53 -9.33 10.10 -10.87 -0.11 -9.44 14 18 C 0.32 5.60 12.28 -92.21 -1.13 4.47 14 19 N -0.49 -10.39 8.62 -13.36 -0.12 -10.51 14 20 H 0.28 7.03 8.31 -40.82 -0.34 6.69 14 21 H 0.15 2.20 7.68 -52.48 -0.40 1.80 14 22 H 0.20 2.74 8.06 -52.49 -0.42 2.32 14 LS Contribution 236.42 15.07 3.56 3.56 Total: -1.00 -27.43 236.42 -4.74 -32.16 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -0.34 Total: -0.78 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.80 Total: 1.58 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.55 Total: -42.61 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.71 Total: 13.70 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.11 Total: -0.48 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.43 -4.74 -32.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919807969.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.134 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds